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175142 Commits

Author SHA1 Message Date
Ricardo Wurmus 34c8ce4fa2 gnu: r-rhdf5filters: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.24.0.
[native-inputs]: Remove r-tinytest; add r-testthat.

Change-Id: I132247f8f9026b95b719dbb4337bf639c56db3c7
 2026-05-28 12:12:46 +02:00
Ricardo Wurmus 214a1d8445 gnu: r-rhdf5: Update to 2.56.0. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.56.0.

Change-Id: I90c98a394401101b2ec0416d3d514567f1128b61
 2026-05-28 12:12:46 +02:00
Ricardo Wurmus 1f351671be gnu: r-reportingtools: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.52.0.

Change-Id: Ib7738d984d5c3a67f7773a524a9e0ea00472f4c5
 2026-05-28 12:12:46 +02:00
Ricardo Wurmus 23187dda7f gnu: r-regioner: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.44.0.

Change-Id: I06bf50727305b238052408f5c4cc1e6f73a79f34
 2026-05-28 12:12:46 +02:00
Ricardo Wurmus 76c4d45784 gnu: r-recount: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-recount): Update to 1.38.0.

Change-Id: I7be0ff77b3eace63ed0241a8c7c45b9ad1312506
 2026-05-28 12:12:45 +02:00
Ricardo Wurmus 12ad8b9b99 gnu: r-rcy3: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-rcy3): Update to 2.32.0.

Change-Id: I8a55bc7ed0b26240f0b40814052a9f08293a103c
 2026-05-28 12:12:45 +02:00
Ricardo Wurmus a53ba86cc2 gnu: r-rcas: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.38.0.

Change-Id: I47e4fb23b52ff8b0ae3d110881fb6f3ef13d2f6a
 2026-05-28 12:12:45 +02:00
Ricardo Wurmus a511aa8dd3 gnu: r-rbgl: Update to 1.88.0. 
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.88.0.

Change-Id: Icf53bd937a206300f03740a5c4fc4670ae61779e
 2026-05-28 12:12:45 +02:00
Ricardo Wurmus ba3a3dfd98 gnu: r-pwalign: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-pwalign): Update to 1.8.0.

Change-Id: I876eb1518a8f8c0b41fd41c56ba5e295c2abb2ab
 2026-05-28 12:12:45 +02:00
Ricardo Wurmus f65da6d839 gnu: r-ptmods: Update to 1.0.0. 
* gnu/packages/bioconductor.scm (r-ptmods): Update to 1.0.0.

Change-Id: If21b048160de8db7e7979bd7e3b9b5ac99562d4a
 2026-05-28 12:12:45 +02:00
Ricardo Wurmus 56a2658226 gnu: r-protgenerics: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.44.0.

Change-Id: Id36cb73f3b7342a683239fa353fe1cd3e1d92485
 2026-05-28 12:12:45 +02:00
Ricardo Wurmus 36680dbfa2 gnu: r-protgear: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-protgear): Update to 1.16.0.

Change-Id: I5693d960cbff8bc334006cbab39fc593e19307b2
 2026-05-28 12:12:45 +02:00
Ricardo Wurmus 9b442b2e03 gnu: r-psmatch: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-psmatch): Update to 1.16.0.
[propagated-inputs]: Remove r-iranges; add r-ptmods.
[native-inputs]: Remove r-msdata; add r-iranges and r-msdatahub.

Change-Id: Id5853b32f7585912c127dcbf5f9be0f9d8bdcbc5
 2026-05-28 12:12:44 +02:00
Ricardo Wurmus f460c9ef60 gnu: r-powertcr: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-powertcr): Update to 1.32.0.

Change-Id: I7379120677e8271c99b636fb91ea9f1ebfa87a26
 2026-05-28 12:12:44 +02:00
Ricardo Wurmus 71e732d064 gnu: r-piano: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-piano): Update to 2.28.0.
[native-inputs]: Add r-biocmanager.

Change-Id: I954b563d8e2d0a4da588060d1d987c2f4153d3ec
 2026-05-28 12:12:44 +02:00
Ricardo Wurmus b332faca7c gnu: r-pfamanalyzer: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-pfamanalyzer): Update to 1.12.0.

Change-Id: Id1c7cea657392c506de3208672925d6ff6097e94
 2026-05-28 12:12:44 +02:00
Ricardo Wurmus f815def29a gnu: r-pcamethods: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 2.4.0.

Change-Id: I52119838eea4bb060ce1a3f627bcd45e7c39e7af
 2026-05-28 12:12:44 +02:00
Ricardo Wurmus e5d1a4f386 gnu: r-pcaexplorer: Update to 3.6.0. 
* gnu/packages/bioconductor.scm (r-pcaexplorer): Update to 3.6.0.

Change-Id: Ia2a1a7e0de27a1316089a8afc9608b244f0ce2d3
 2026-05-28 12:12:44 +02:00
Ricardo Wurmus fef35535ea gnu: r-oscope: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-oscope): Update to 1.42.0.
[native-inputs]: Add r-biocstyle.

Change-Id: Ia7e3ab1009a86793517a0646a36f420b38694b41
 2026-05-28 12:12:44 +02:00
Ricardo Wurmus df1d0e66fc gnu: r-organismdbi: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.54.0.

Change-Id: I7d528d0acafab2e720a1559817f9f1dff2449a59
 2026-05-28 12:12:44 +02:00
Ricardo Wurmus bc5a3647ad gnu: r-mzr: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.46.0.
[native-inputs]: Remove r-msdata; add r-msdatahub.

Change-Id: I215f88b9ddbaa72c9b92c5aa08c11ee3f0e4cf0a
 2026-05-28 12:12:43 +02:00
Ricardo Wurmus f355731f45 gnu: r-mzid: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-mzid): Update to 1.50.0.

Change-Id: I4a9fc46435fe9e068619e2dfd86bdc3c03cf5158
 2026-05-28 12:12:43 +02:00
Ricardo Wurmus 50dc55adeb gnu: r-msnid: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.46.0.

Change-Id: Ibf481b8e6a0a8ebffd420d9e3167da1c355bc26c
 2026-05-28 12:12:43 +02:00
Ricardo Wurmus 451484a8ab gnu: r-msdatahub: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-msdatahub): Update to 1.12.0.

Change-Id: I869825fcb536f468b5345d7fd99f6b57e696b899
 2026-05-28 12:12:43 +02:00
Ricardo Wurmus 372b9ba4b4 gnu: r-msa: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-msa): Update to 1.44.0.
[native-inputs]: Add r-biocmanager.

Change-Id: Ibd43e66252013bdb8d9e0cf2daf1ce6e3820b635
 2026-05-28 12:12:43 +02:00
Ricardo Wurmus 09a234bc9d gnu: r-mutationalpatterns: Update to 3.22.0. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.22.0.

Change-Id: I86c8518867a0ec3064f7b3a7801ebf03412df8fa
 2026-05-28 12:12:43 +02:00
Ricardo Wurmus 143eba5258 gnu: r-muscat: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-muscat): Update to 1.26.0.
[propagated-inputs]: Remove r-data-table, r-deseq2, r-ihw, r-purrr, and r-sctransform;
add r-matrixgenerics.

Change-Id: Iba29e4cf4640e07c98343a3a6aa979fb882d69e3
 2026-05-28 12:12:43 +02:00
Ricardo Wurmus 39e3756291 gnu: r-mosdef: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-mosdef): Update to 1.8.0.

Change-Id: Icd747ccb0dfa57f19baba2ac5792ce49ed5679d8
 2026-05-28 12:12:42 +02:00
Ricardo Wurmus 6777068d16 gnu: r-modstrings: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-modstrings): Update to 1.28.0.

Change-Id: I5ca89d72a6225bdb62272988d7bf105ccc8e6a2e
 2026-05-28 12:12:42 +02:00
Ricardo Wurmus 8a43a38b7e gnu: r-mmuphin: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-mmuphin): Update to 2.0.0.

Change-Id: I623fbd4952eeb6791e116d81e9a2ca4b326f018f
 2026-05-28 12:12:42 +02:00
Ricardo Wurmus 6253c85e15 gnu: r-mfuzz: Update to 2.72.0. 
* gnu/packages/bioconductor.scm (r-mfuzz): Update to 2.72.0.

Change-Id: I09abbb594a9928c61851c0e068ed174aa1f7b667
 2026-05-28 12:12:42 +02:00
Ricardo Wurmus 67f341f0ef gnu: r-methylkit: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.38.0.

Change-Id: I2d77375a092731b9c51e5726115a5f748f432a12
 2026-05-28 12:12:42 +02:00
Ricardo Wurmus 0e756bce67 gnu: r-methylaid: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-methylaid): Update to 1.46.0.
[native-inputs]: Add r-biocstyle.

Change-Id: I52106bdae1e90f72dd2f2543812d7e7ad0747ec8
 2026-05-28 12:12:42 +02:00
Ricardo Wurmus 0a60e65c96 gnu: r-metagenomeseq: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-metagenomeseq): Update to 1.54.0.
[native-inputs]: Add r-annotate.

Change-Id: Ief784933d47bc5b773533f4586d6927f4fbabc1e
 2026-05-28 12:12:42 +02:00
Ricardo Wurmus d662e32cf9 gnu: r-metabocoreutils: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-metabocoreutils): Update to 1.20.0.

Change-Id: I257cbd5ac0dc2440cc4db0542d8a66930d364d62
 2026-05-28 12:12:42 +02:00
Ricardo Wurmus eaa6089618 gnu: r-mdqc: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-mdqc): Update to 1.74.0.

Change-Id: I2fc2d45aec66a6f08fce76cd7acb785d2ac1a944
 2026-05-28 12:12:41 +02:00
Ricardo Wurmus 1acf4e8f1f gnu: r-maser: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-maser): Update to 1.30.0.

Change-Id: I115d758528b8cd0136a91d9b860681f34f5dea4e
 2026-05-28 12:12:41 +02:00
Ricardo Wurmus 0dbbcea0ed gnu: r-manor: Update to 1.84.0. 
* gnu/packages/bioconductor.scm (r-manor): Update to 1.84.0.

Change-Id: I155c6c67b20266d9825e49bfde35a35a93cb2bb9
 2026-05-28 12:12:41 +02:00
Ricardo Wurmus 71a57aa1df gnu: r-makecdfenv: Update to 1.88.0. 
* gnu/packages/bioconductor.scm (r-makecdfenv): Update to 1.88.0.

Change-Id: If26aa6b4c5c6a73378428195dbe751e57b2743eb
 2026-05-28 12:12:41 +02:00
Ricardo Wurmus d4131695e0 gnu: r-made4: Update to 1.86.0. 
* gnu/packages/bioconductor.scm (r-made4): Update to 1.86.0.

Change-Id: I87aa8fa50ecd42113ecd9191b4171450c09aa683
 2026-05-28 12:12:41 +02:00
Ricardo Wurmus 09c9c6bd51 gnu: r-maaslin3: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-maaslin3): Update to 1.4.0.

Change-Id: I1b4d611dbe1b8cd31ff086fd70ae20b9533dd65c
 2026-05-28 12:12:41 +02:00
Ricardo Wurmus 643402fdf9 gnu: r-maaslin2: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.26.0.

Change-Id: Id36d88f30a281da933943fc68e00e79a3408a46b
 2026-05-28 12:12:41 +02:00
Ricardo Wurmus 4acdd91115 gnu: r-limma: Update to 3.68.0. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.68.0.

Change-Id: I6773a28b254215c68edc859394c38d81121c5b91
 2026-05-28 12:12:41 +02:00
Ricardo Wurmus 93556d3484 gnu: r-lfa: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-lfa): Update to 2.12.0.
[propagated-inputs]: Add r-bedmatrix and r-genio.
[native-inputs]: Remove r-ggplot2.

Change-Id: I06b6975cdb126a757d6b2a7b65ee9361d9234083
 2026-05-28 12:12:40 +02:00
Ricardo Wurmus 472b7ce9ce gnu: r-lea: Update to 3.24.0. 
* gnu/packages/bioconductor.scm (r-lea): Update to 3.24.0.

Change-Id: I0feedcef9749fa29cb8b6c5f9db8c0fd05efe96c
 2026-05-28 12:12:40 +02:00
Ricardo Wurmus d6b15e1276 gnu: r-keggrest: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.52.0.

Change-Id: Idd4525e2e53fe66292d65f204f8819b1960ffc3c
 2026-05-28 12:12:40 +02:00
Ricardo Wurmus de60baf04f gnu: r-impute: Update to 1.86.0. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.86.0.

Change-Id: If868fd51052773acd23751fb6bceed5738306e7d
 2026-05-28 12:12:40 +02:00
Ricardo Wurmus 6eb42e308a gnu: r-rpx: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-rpx): Update to 2.20.0.

Change-Id: I24e443d0488ec7d95cb133418e10c799bf3f8283
 2026-05-28 12:12:40 +02:00
Ricardo Wurmus 5d9a3a5eac gnu: r-rnbeads: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-rnbeads): Update to 2.30.0.
[native-inputs]: Add r-biocmanager.

Change-Id: Ic844ed1f9a33d17ae9f63955373cadf5059374c8
 2026-05-28 12:12:40 +02:00
Ricardo Wurmus 41c6878fca gnu: r-rhtslib: Update to 3.8.0. 
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 3.8.0.

Change-Id: I0a2b85c5db63c6583e685dafdcf1be36619dbb32
 2026-05-28 12:12:40 +02:00