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67f341f0effe97173fb134ae5cd3fdaf4da613d8
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175111 Commits

Author SHA1 Message Date
Ricardo Wurmus 67f341f0ef gnu: r-methylkit: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-methylkit): Update to 1.38.0.

Change-Id: I2d77375a092731b9c51e5726115a5f748f432a12
 2026-05-28 12:12:42 +02:00
Ricardo Wurmus 0e756bce67 gnu: r-methylaid: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-methylaid): Update to 1.46.0.
[native-inputs]: Add r-biocstyle.

Change-Id: I52106bdae1e90f72dd2f2543812d7e7ad0747ec8
 2026-05-28 12:12:42 +02:00
Ricardo Wurmus 0a60e65c96 gnu: r-metagenomeseq: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-metagenomeseq): Update to 1.54.0.
[native-inputs]: Add r-annotate.

Change-Id: Ief784933d47bc5b773533f4586d6927f4fbabc1e
 2026-05-28 12:12:42 +02:00
Ricardo Wurmus d662e32cf9 gnu: r-metabocoreutils: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-metabocoreutils): Update to 1.20.0.

Change-Id: I257cbd5ac0dc2440cc4db0542d8a66930d364d62
 2026-05-28 12:12:42 +02:00
Ricardo Wurmus eaa6089618 gnu: r-mdqc: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-mdqc): Update to 1.74.0.

Change-Id: I2fc2d45aec66a6f08fce76cd7acb785d2ac1a944
 2026-05-28 12:12:41 +02:00
Ricardo Wurmus 1acf4e8f1f gnu: r-maser: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-maser): Update to 1.30.0.

Change-Id: I115d758528b8cd0136a91d9b860681f34f5dea4e
 2026-05-28 12:12:41 +02:00
Ricardo Wurmus 0dbbcea0ed gnu: r-manor: Update to 1.84.0. 
* gnu/packages/bioconductor.scm (r-manor): Update to 1.84.0.

Change-Id: I155c6c67b20266d9825e49bfde35a35a93cb2bb9
 2026-05-28 12:12:41 +02:00
Ricardo Wurmus 71a57aa1df gnu: r-makecdfenv: Update to 1.88.0. 
* gnu/packages/bioconductor.scm (r-makecdfenv): Update to 1.88.0.

Change-Id: If26aa6b4c5c6a73378428195dbe751e57b2743eb
 2026-05-28 12:12:41 +02:00
Ricardo Wurmus d4131695e0 gnu: r-made4: Update to 1.86.0. 
* gnu/packages/bioconductor.scm (r-made4): Update to 1.86.0.

Change-Id: I87aa8fa50ecd42113ecd9191b4171450c09aa683
 2026-05-28 12:12:41 +02:00
Ricardo Wurmus 09c9c6bd51 gnu: r-maaslin3: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-maaslin3): Update to 1.4.0.

Change-Id: I1b4d611dbe1b8cd31ff086fd70ae20b9533dd65c
 2026-05-28 12:12:41 +02:00
Ricardo Wurmus 643402fdf9 gnu: r-maaslin2: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.26.0.

Change-Id: Id36d88f30a281da933943fc68e00e79a3408a46b
 2026-05-28 12:12:41 +02:00
Ricardo Wurmus 4acdd91115 gnu: r-limma: Update to 3.68.0. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.68.0.

Change-Id: I6773a28b254215c68edc859394c38d81121c5b91
 2026-05-28 12:12:41 +02:00
Ricardo Wurmus 93556d3484 gnu: r-lfa: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-lfa): Update to 2.12.0.
[propagated-inputs]: Add r-bedmatrix and r-genio.
[native-inputs]: Remove r-ggplot2.

Change-Id: I06b6975cdb126a757d6b2a7b65ee9361d9234083
 2026-05-28 12:12:40 +02:00
Ricardo Wurmus 472b7ce9ce gnu: r-lea: Update to 3.24.0. 
* gnu/packages/bioconductor.scm (r-lea): Update to 3.24.0.

Change-Id: I0feedcef9749fa29cb8b6c5f9db8c0fd05efe96c
 2026-05-28 12:12:40 +02:00
Ricardo Wurmus d6b15e1276 gnu: r-keggrest: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.52.0.

Change-Id: Idd4525e2e53fe66292d65f204f8819b1960ffc3c
 2026-05-28 12:12:40 +02:00
Ricardo Wurmus de60baf04f gnu: r-impute: Update to 1.86.0. 
* gnu/packages/bioconductor.scm (r-impute): Update to 1.86.0.

Change-Id: If868fd51052773acd23751fb6bceed5738306e7d
 2026-05-28 12:12:40 +02:00
Ricardo Wurmus 6eb42e308a gnu: r-rpx: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-rpx): Update to 2.20.0.

Change-Id: I24e443d0488ec7d95cb133418e10c799bf3f8283
 2026-05-28 12:12:40 +02:00
Ricardo Wurmus 5d9a3a5eac gnu: r-rnbeads: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-rnbeads): Update to 2.30.0.
[native-inputs]: Add r-biocmanager.

Change-Id: Ic844ed1f9a33d17ae9f63955373cadf5059374c8
 2026-05-28 12:12:40 +02:00
Ricardo Wurmus 41c6878fca gnu: r-rhtslib: Update to 3.8.0. 
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 3.8.0.

Change-Id: I0a2b85c5db63c6583e685dafdcf1be36619dbb32
 2026-05-28 12:12:40 +02:00
Ricardo Wurmus 866725e21c gnu: r-rdisop: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-rdisop): Update to 1.72.0.

Change-Id: I25e35fd09371e511acbd2cff38f65b893f625620
 2026-05-28 12:12:40 +02:00
Ricardo Wurmus d303f771e7 gnu: r-rarr: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-rarr): Update to 2.0.0.
[propagated-inputs]: Remove r-biocgenerics and r-delayedarray; add r-lifecycle.

Change-Id: Ic4a8af53abeedaf083a241eae18f34c6016f6498
 2026-05-28 12:12:39 +02:00
Ricardo Wurmus 9036daf90d gnu: r-raggedexperiment: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-raggedexperiment): Update to 1.36.0.

Change-Id: Ic0bf19fcc6044a9a24d6e375c4f41ffd78df4a2c
 2026-05-28 12:12:39 +02:00
Ricardo Wurmus a35d14d52c gnu: r-radiogx: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-radiogx): Update to 2.16.0.

Change-Id: Ic73284307ca196c12f93a3439fec747a6aa9c1fb
 2026-05-28 12:12:39 +02:00
Ricardo Wurmus 06eaa17b9e gnu: r-r4rna: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-r4rna): Update to 1.40.0.

Change-Id: I3cad9c1a26f6e1e91f8e8ca5a921455a8d00cba0
 2026-05-28 12:12:39 +02:00
Ricardo Wurmus 6186597c43 gnu: r-r3cseq: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-r3cseq): Update to 1.58.0.

Change-Id: I9642abc5e49f467b9536f29cedff765094887279
 2026-05-28 12:12:39 +02:00
Ricardo Wurmus 1b41aab170 gnu: r-hpar: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.54.0.

Change-Id: If2c2efdc9ad5213996250c15d81d7e042c833840
 2026-05-28 12:12:39 +02:00
Ricardo Wurmus c54c558332 gnu: r-gypsum: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-gypsum): Update to 1.8.0.

Change-Id: Iee1ee433aaf6a51689011779f7e413ab98188d8b
 2026-05-28 12:12:39 +02:00
Ricardo Wurmus 67c859f5dd gnu: r-gseabase: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.74.0.

Change-Id: Ic444ad49c357a9a3054cee58e19c4b23e34f59ea
 2026-05-28 12:12:39 +02:00
Ricardo Wurmus 058f495df9 gnu: r-gostats: Update to 2.78.0. 
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.78.0.

Change-Id: I5ee8e050dc7ee406c79bf8956b884639a78938bf
 2026-05-28 12:12:38 +02:00
Ricardo Wurmus 0e4ae637f2 gnu: r-globaltest: Update to 5.66.0. 
* gnu/packages/bioconductor.scm (r-globaltest): Update to 5.66.0.

Change-Id: I87b23bd9a726ce219dffd1507948c6b02ef2eb85
 2026-05-28 12:12:38 +02:00
Ricardo Wurmus ebc8e28ced gnu: r-globalancova: Update to 4.30.0. 
* gnu/packages/bioconductor.scm (r-globalancova): Update to 4.30.0.

Change-Id: I3c2d7785eb2ad9c1156acae5fb95bd92b14324a5
 2026-05-28 12:12:38 +02:00
Ricardo Wurmus 5eef28b40a gnu: r-glad: Update to 2.76.0. 
* gnu/packages/bioconductor.scm (r-glad): Update to 2.76.0.

Change-Id: I2511f56543ddb43d8303625b32887425e31b443f
 2026-05-28 12:12:38 +02:00
Ricardo Wurmus d572b02b70 gnu: r-genomicranges: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.64.0.
[native-inputs]: Add r-biocstyle.

Change-Id: I9a1c6eeed71dc6174046b0429d8ea409d1fe0ed2
 2026-05-28 12:12:38 +02:00
Ricardo Wurmus 98a53235ee gnu: r-genomicfiles: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.48.0.

Change-Id: I2a7d6afbab4c5c2889efb1e45d8db4a02cf8c480
 2026-05-28 12:12:38 +02:00
Ricardo Wurmus 069c6764ab gnu: r-genomicfeatures: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.64.0.

Change-Id: I29c63234819be55c430b2987e0deec6b25f15cc7
 2026-05-28 12:12:38 +02:00
Ricardo Wurmus 09ed9e1547 gnu: r-genomicdatacommons: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-genomicdatacommons): Update to 1.36.0.

Change-Id: I39b1698bb20c8a46b8672dfa04d4324c17af2da1
 2026-05-28 12:12:37 +02:00
Ricardo Wurmus 1f7c7258b7 gnu: r-genomicalignments: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.48.0.
[native-inputs]: Add r-biocmanager and r-biocstyle.

Change-Id: Ied3ea007d47c3eec1ea2ae273c7bbe36c04f3519
 2026-05-28 12:12:37 +02:00
Ricardo Wurmus e2792d00bd gnu: r-genomeinfodb: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.48.0.
[native-inputs]: Add r-biocstyle.

Change-Id: Idb670a003dc3f7a4a43a799bfa27f07cf9668080
 2026-05-28 12:12:37 +02:00
Ricardo Wurmus 52d7835f33 gnu: r-genomation: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.44.0.

Change-Id: I5d820238de0a4a45228b8773ccc2b1d98114c22e
 2026-05-28 12:12:37 +02:00
Ricardo Wurmus 253644cc9d gnu: r-geneoverlap: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.48.0.

Change-Id: I1c81732524bfa0466d471020e95dae25c475e7dd
 2026-05-28 12:12:37 +02:00
Ricardo Wurmus 4404ce011a gnu: r-genefilter: Update to 1.94.0. 
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.94.0.
[native-inputs]: Add r-biocstyle.

Change-Id: I4b878bd22ecc24d05bd0fde89aec6309e19ec4c4
 2026-05-28 12:12:37 +02:00
Ricardo Wurmus 9613e22caa gnu: r-gcptools: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-gcptools): Update to 1.2.0.

Change-Id: I3ff35f24706af1734c559c91715f94ac9a3455ba
 2026-05-28 12:12:37 +02:00
Ricardo Wurmus 7cd8e44251 gnu: r-gage: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-gage): Update to 2.62.0.

Change-Id: Ibca65b38d028cd8455985b3aa510e02ef48e4b8e
 2026-05-28 12:12:37 +02:00
Ricardo Wurmus b4c5ed39e4 gnu: r-fastseg: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.58.0.

Change-Id: I211891d94ad0970e9eea100ae96c8d65651c4c2a
 2026-05-28 12:12:36 +02:00
Ricardo Wurmus 54cfa4d161 gnu: r-epidish: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-epidish): Update to 2.28.0.
[propagated-inputs]: Add r-genefilter.

Change-Id: Icf86175abea5b24ec244a64978f4c14a8590d4fa
 2026-05-28 12:12:36 +02:00
Ricardo Wurmus 66597b0ac4 gnu: r-ensembldb: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.36.0.

Change-Id: Id58a311bbfed154731dfd2ff1e6b248cbfda0147
 2026-05-28 12:12:36 +02:00
Ricardo Wurmus 2651f1edfa gnu: r-enmix: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-enmix): Update to 1.48.0.

Change-Id: Ibb91b7c10c03aed0ed5c377380c8c841de7203e1
 2026-05-28 12:12:36 +02:00
Ricardo Wurmus 2e12bb67ab gnu: r-enhancedvolcano: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-enhancedvolcano): Update to 1.30.0.

Change-Id: If8aaf8d567b245f734b949fb160fca12d331db22
 2026-05-28 12:12:36 +02:00
Ricardo Wurmus c5491f1795 gnu: r-edger: Update to 4.10.0. 
* gnu/packages/bioconductor.scm (r-edger): Update to 4.10.0.

Change-Id: Id6082776eb5c81600f396b52b4f1ea46c10ed2a9
 2026-05-28 12:12:36 +02:00
Ricardo Wurmus fd68261bd3 gnu: r-edaseq: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.46.0.

Change-Id: Id3a969a43019ca5b0bad356df35fcbe51e10834e
 2026-05-28 12:12:36 +02:00