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157675 Commits

Author SHA1 Message Date
Ricardo Wurmus 7799bbb00b gnu: r-leukemiaseset: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-leukemiaseset): Update to 1.46.0.

Change-Id: If125dd1849e957c16e4164fff887b8b6303cc4af
2025-11-29 12:20:25 +01:00
Ricardo Wurmus 34ea1cee15 gnu: r-jaspar2016: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-jaspar2016): Update to 1.38.0.

Change-Id: Ifdca2f409bbfc6c0254f048404d0b1d9057737b0
2025-11-29 12:20:25 +01:00
Ricardo Wurmus 425eb3c44b gnu: r-italicsdata: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-italicsdata): Update to 2.48.0.

Change-Id: I4361b724fc7c869c53a8212bc442fc50f623e909
2025-11-29 12:20:25 +01:00
Ricardo Wurmus 24f4092a30 gnu: r-illuminadatatestfiles: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-illuminadatatestfiles): Update to 1.48.0.

Change-Id: I3834f4db04eaff8ccc8ab0250e45d6bad0b9d6ba
2025-11-29 12:20:25 +01:00
Ricardo Wurmus bda21345c1 gnu: r-illumina450probevariants-db: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-illumina450probevariants-db): Update to 1.46.0.

Change-Id: I31c0b304a551f485bb27c266d0fc52fa4e1fcdca
2025-11-29 12:20:25 +01:00
Ricardo Wurmus 749da2c3d9 gnu: r-hdcytodata: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-hdcytodata): Update to 1.30.0.

Change-Id: Ie30413826312c3725b23644a517ba431f04a0f42
2025-11-29 12:20:25 +01:00
Ricardo Wurmus 970722bd7e gnu: r-hellorangesdata: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-hellorangesdata): Update to 1.36.0.

Change-Id: Iaa6ae6a88c3c21748c1e14fb139cb721d19168c3
2025-11-29 12:20:24 +01:00
Ricardo Wurmus a5e8bd8bb0 gnu: r-gsvadata: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-gsvadata): Update to 1.46.0.

Change-Id: I9e25e2fe40ec0353650ea703bc7aa9ac35ba1bf9
2025-11-29 12:20:24 +01:00
Ricardo Wurmus c4c274a17b gnu: r-golubesets: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-golubesets): Update to 1.52.0.

Change-Id: I6f845990e72da69bb2c2940baab5c7fdd8d0dedb
2025-11-29 12:20:24 +01:00
Ricardo Wurmus ec56f3fd98 gnu: r-genomationdata: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-genomationdata): Update to 1.42.0.

Change-Id: Ie6d38b1deb863aa5537d3f961a4b44af3f081a94
2025-11-29 12:20:24 +01:00
Ricardo Wurmus 7e990e77e3 gnu: r-genelendatabase: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.46.0.

Change-Id: I98be89f54e2c488b891fb428e4b4064eed500c79
2025-11-29 12:20:24 +01:00
Ricardo Wurmus 9ec7aed88a gnu: r-flowworkspacedata: Update to 3.22.0.
* gnu/packages/bioconductor.scm (r-flowworkspacedata): Update to 3.22.0.

Change-Id: I289e70ceb4769b6f7761c05080623d389713483e
2025-11-29 12:20:24 +01:00
Ricardo Wurmus b7fa1f8617 gnu: r-flowsorted-blood-epic: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-flowsorted-blood-epic): Update to 2.14.0.

Change-Id: I2a76385fd588269f72124587020fde508fccb20c
2025-11-29 12:20:24 +01:00
Ricardo Wurmus 750bbcb1e0 gnu: r-flowsorted-blood-450k: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-flowsorted-blood-450k): Update to 1.48.0.

Change-Id: Iaedc58a253f48f909eaf31227f9765913f07f3a3
2025-11-29 12:20:24 +01:00
Ricardo Wurmus 03d196abdb gnu: r-faahko: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-faahko): Update to 1.50.0.

Change-Id: I6805b656fddf5e0858ab2babf8c19957757bd48a
2025-11-29 12:20:24 +01:00
Ricardo Wurmus ff6f23d611 gnu: r-derfinderdata: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-derfinderdata): Update to 2.28.0.

Change-Id: Id42086a4291bca65808c8dac7a148475f9535c8a
2025-11-29 12:20:23 +01:00
Ricardo Wurmus d171ef9055 gnu: r-copyhelper: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-copyhelper): Update to 1.42.0.

Change-Id: Ibdba2fa086a4486c835a30f0fb80466b12fca00d
2025-11-29 12:20:23 +01:00
Ricardo Wurmus 8ef0774747 gnu: r-chromstardata: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-chromstardata): Update to 1.36.0.

Change-Id: I098cbd984349d77895a62f4a2e34700f568731ef
2025-11-29 12:20:23 +01:00
Ricardo Wurmus 76e7c5a0b3 gnu: r-chipexoqualexample: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-chipexoqualexample): Update to 1.34.0.

Change-Id: I013480b059276c1ee931f4bc71eb8e265f6ad522
2025-11-29 12:20:23 +01:00
Ricardo Wurmus 1c2d4ed788 gnu: r-champdata: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-champdata): Update to 2.42.0.

Change-Id: I2fed879409e5f5a134e12317658467469eedcab5
2025-11-29 12:20:23 +01:00
Ricardo Wurmus 7ba2cea3a1 gnu: r-celldex: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-celldex): Update to 1.20.0.

Change-Id: I56a658c7d9b9bde1d65951b23512f211e1fb25bf
2025-11-29 12:20:23 +01:00
Ricardo Wurmus 47a4a8200c gnu: r-breastcancervdx: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-breastcancervdx): Update to 1.48.0.

Change-Id: Ie8a09415f25690453c1408da6ade1543f70391f6
2025-11-29 12:20:23 +01:00
Ricardo Wurmus 245343f7f7 gnu: r-breakpointrdata: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-breakpointrdata): Update to 1.28.0.

Change-Id: I3e94ca03a512d44c86eef1dea14c5800a9531cc4
2025-11-29 12:20:23 +01:00
Ricardo Wurmus 868aafe74c gnu: r-biscuiteerdata: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-biscuiteerdata): Update to 1.24.0.

Change-Id: I502b87799c2175083280e32e3766f49aaba405fb
2025-11-29 12:20:23 +01:00
Ricardo Wurmus d88644a366 gnu: r-bodymaprat: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-bodymaprat): Update to 1.26.0.

Change-Id: I18a953577bf63a65fca0ae480c701ad7c356c373
2025-11-29 12:20:22 +01:00
Ricardo Wurmus c832dd8822 gnu: r-bladderbatch: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-bladderbatch): Update to 1.48.0.

Change-Id: I2053ab3a6700edf0c3607cd0e80effd9acf19acb
2025-11-29 12:20:22 +01:00
Ricardo Wurmus ee8057095f gnu: r-biotmledata: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-biotmledata): Update to 1.34.0.

Change-Id: If8e8eb05664699bb3b9d3c68296b599902bb0b75
2025-11-29 12:20:22 +01:00
Ricardo Wurmus 3114e72bc4 gnu: r-bcellviper: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-bcellviper): Update to 1.46.0.

Change-Id: I56b5dc4079556fd59aef7df767bf4a1b20effde5
2025-11-29 12:20:22 +01:00
Ricardo Wurmus 5d7243aca5 gnu: r-arrmdata: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-arrmdata): Update to 1.46.0.

Change-Id: I142792271606057b3fa3dbbdbc71efdcf76e0f90
2025-11-29 12:20:22 +01:00
Ricardo Wurmus 043362e646 gnu: r-aneufinderdata: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-aneufinderdata): Update to 1.38.0.

Change-Id: I5451a5985a88d19f69093d5e33d6c62d28bc1225
2025-11-29 12:20:22 +01:00
Ricardo Wurmus 0688f366a9 gnu: r-airway: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-airway): Update to 1.30.0.

Change-Id: I898a05768f1d9b976f8a6df3ee754b0a60092870
2025-11-29 12:20:22 +01:00
Ricardo Wurmus 30b4bae894 gnu: r-adductdata: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-adductdata): Update to 1.26.0.

Change-Id: I7bcd40288c79791cb7a887b20341a8c9a2c3cbcc
2025-11-29 12:20:22 +01:00
Ricardo Wurmus 0c0bfec748 gnu: r-pfam-db: Update to 3.22.0.
* gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.22.0.

Change-Id: I6a6da191f61e32443dd8836982bf6491ca8b80f4
2025-11-29 12:20:22 +01:00
Ricardo Wurmus d42a3605cd gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Update to 3.22.0.
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): Update to 3.22.0.

Change-Id: I2dac83c9d2272db7d3ff8c0622d3270f28726fe7
2025-11-29 12:20:21 +01:00
Ricardo Wurmus 69b3ea3b70 gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Update to 3.22.1.
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene): Update to 3.22.1.

Change-Id: I55196e4afcd22e3b8c8859cfb5d4f70cf767de9e
2025-11-29 12:20:21 +01:00
Ricardo Wurmus d5d2452cab gnu: r-org-mm-eg-db: Update to 3.22.0.
* gnu/packages/bioconductor.scm (r-org-mm-eg-db): Update to 3.22.0.

Change-Id: I919b44eb74064b3ada05fe7ba5f006871f134f04
2025-11-29 12:20:21 +01:00
Ricardo Wurmus fbc9871158 gnu: r-org-hs-eg-db: Update to 3.22.0.
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): Update to 3.22.0.

Change-Id: I75594b201a8524130296c407a16317167ec39061
2025-11-29 12:20:21 +01:00
Ricardo Wurmus e7d3f43044 gnu: r-org-dr-eg-db: Update to 3.22.0.
* gnu/packages/bioconductor.scm (r-org-dr-eg-db): Update to 3.22.0.

Change-Id: I18790580c9d33abf2bbc03355bb5f7d58b6598b1
2025-11-29 12:20:21 +01:00
Ricardo Wurmus 1b4ba32d13 gnu: r-org-dm-eg-db: Update to 3.22.0.
* gnu/packages/bioconductor.scm (r-org-dm-eg-db): Update to 3.22.0.

Change-Id: Icb03b5d642d2ea8fd572e964135cd5838585fb12
2025-11-29 12:20:21 +01:00
Ricardo Wurmus 60a5d4c8da gnu: r-org-ce-eg-db: Update to 3.22.0.
* gnu/packages/bioconductor.scm (r-org-ce-eg-db): Update to 3.22.0.

Change-Id: Ia5cda1881b437f6f176605fe4840c745f0bc856b
2025-11-29 12:20:21 +01:00
Ricardo Wurmus 71dac9e05f gnu: r-go-db: Update to 3.22.0.
* gnu/packages/bioconductor.scm (r-go-db): Update to 3.22.0.

Change-Id: I6a3e13802357437eb7a4a1348ab63b1d8e305668
2025-11-29 12:20:21 +01:00
Ricardo Wurmus dddad93263 gnu: r-genomeinfodbdata: Update to 1.2.15.
* gnu/packages/bioconductor.scm (r-genomeinfodbdata): Update to 1.2.15.

Change-Id: I98ecb790623f3ff9f2a7809f638348a1c7009da3
2025-11-29 12:20:21 +01:00
Ricardo Wurmus d7c074931e gnu: r-reactome-db: Update to 1.94.0.
* gnu/packages/bioconductor.scm (r-reactome-db): Update to 1.94.0.

Change-Id: I144911b6389bdcd3047b7a8bed27d44ba1eb600c
2025-11-29 12:20:20 +01:00
Ricardo Wurmus 258ee7c76a gnu: r-org-sc-sgd-db: Update to 3.22.0.
* gnu/packages/bioconductor.scm (r-org-sc-sgd-db): Update to 3.22.0.

Change-Id: Ia156696d9db2d08b90813e1c7ffaeb66437f6f73
2025-11-29 12:20:20 +01:00
Ricardo Wurmus 8149efbbfe gnu: r-org-bt-eg-db: Update to 3.22.0.
* gnu/packages/bioconductor.scm (r-org-bt-eg-db): Update to 3.22.0.

Change-Id: Ibbdb0b292882a82fbac16dc119cad9cdd6fe12df
2025-11-29 12:20:20 +01:00
Ricardo Wurmus 7f5f0f95e3 gnu: r-org-eck12-eg-db: Update to 3.22.0.
* gnu/packages/bioconductor.scm (r-org-eck12-eg-db): Update to 3.22.0.

Change-Id: I40f8ddbffcfed5bf6dee8b67cb270d3332f42a0e
2025-11-29 12:20:20 +01:00
Ricardo Wurmus 9ad27981dc gnu: r-organism-dplyr: Update to 1.37.1.
* gnu/packages/bioconductor.scm (r-organism-dplyr): Update to 1.37.1.
[arguments]: Disable tests.
[propagated-inputs]: Add r-seqinfo; remove r-genomeinfodb.

Change-Id: I7cafffa444230adeb69f97f6c1ca35c66dd3b579
2025-11-29 12:20:20 +01:00
Ricardo Wurmus 73995d797d gnu: r-ballgown: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.42.0.
[arguments]: Add phase 'testthat-compatibility.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: I58fd4adb79b1d1616e89b149fd8a89b0d294ea3f
2025-11-29 12:20:20 +01:00
Ricardo Wurmus de94260518 gnu: r-transcriptr: Update to 1.37.0.
* gnu/packages/bioconductor.scm (r-transcriptr): Update to 1.37.0.
[arguments]: Add phase 'disable-bad-tests.

Change-Id: I45c4c5918ef051d2f82baf2b69a34388eeec87b9
2025-11-29 12:20:20 +01:00
Ricardo Wurmus f5d99d4f68 gnu: r-basilisk-utils: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.22.0.
[arguments]: Disable tests.

Change-Id: I919d88d98588e0836c402392ceb68330f2ba916d
2025-11-29 12:20:20 +01:00