gnu: linux-libre: Extract common kernel modules into variables.

Deduplicate common default modules in an attempt to clean the module up.

* gnu/packages/linux.scm (pinebook-extra-modules,
arm64-generic-extra-modules): New variables.
(linux-libre-arm64-generic, linux-libre-lts-arm64-generic,
linux-libre-arm64-generic-5.10): Use new variables.

Change-Id: Ia48d6942332e71cadd43decb59d633180b0d3264
Signed-off-by: Vagrant Cascadian <vagrant@debian.org>

.dir-locals.el

@@ -141,6 +141,7 @@
    (eval . (put 'substitute* 'scheme-indent-function 1))
    (eval . (put 'match-record 'scheme-indent-function 3))
    (eval . (put 'match-record-lambda 'scheme-indent-function 2))
+   (eval . (put 'with-fluids 'scheme-indent-function 2))
 
    ;; TODO: Contribute these to Emacs' scheme-mode.
    (eval . (put 'let-keywords 'scheme-indent-function 3))

.forgejo/pull_request_template.md

@@ -28,7 +28,13 @@ Tick a box by changing it from [ ] to [x].
   - [ ] i586-gnu
 
 - Package **update**
-  - Closure size increase after update (`./pre-inst-env guix size PACKAGE`).
+  - Closure size increase.
+```console
+$ guix size PACKAGE | tail -n1 # before
+total: ...
+$ ./pre-inst-env guix size PACKAGE | tail -n1 # after
+total: ...
+```
   - Build status of direct dependents (`./pre-inst-env guix build -k -P1 PACKAGE ...`):
 ```text
 

.guix-authorizations

@@ -23,6 +23,8 @@
    (name "cbaines"))
   ("3CE4 6455 8A84 FDC6 9DB4  0CFB 090B 1199 3D9A EBB5"
    (name "civodul"))
+  ("838A FE0D 55DC 074E 360F  943A 84B6 9CE6 F3F6 B767"
+   (name "cnx"))
   ("CCB8 1842 F9D7 058E CD67  377A BF5C DF4D F6BF 6682"
    (name "csantosb"))
   ("510A 8628 E2A7 7678 8F8C  709C 4BC0 2592 5FF8 F4D3"

CODEOWNERS

@@ -239,6 +239,7 @@ tests/guix-home\.sh                                @guix/home
 tests/home-import\.scm                             @guix/home
 tests/home-services\.scm                           @guix/home
 
+gnu/packages/fabric-management\.scm                @guix/hpc
 gnu/packages/mpi\.scm                              @guix/hpc
 gnu/packages/oneapi\.scm                           @guix/hpc
 gnu/packages/opencl\.scm                           @guix/hpc
@@ -347,7 +348,6 @@ guix/scripts/import/pypi\.scm                      @guix/python
 tests/import/pypi\.scm                             @guix/python
 tests/toml\.scm                                    @guix/python
 
-gnu/ci\.scm                                        @guix/qa-packages
 gnu/packages/benchmark\.scm                        @guix/qa-packages
 gnu/packages/check\.scm                            @guix/qa-packages
 gnu/packages/ci\.scm                               @guix/qa-packages

Makefile.am

@@ -802,17 +802,17 @@ EXTRA_DIST +=						\
   etc/manifests/upgrade.scm				\
   scripts/guix.in					\
   tests/cve-sample.json					\
-  tests/keys/civodul.pub				\
-  tests/keys/dsa.pub					\
-  tests/keys/ed25519-2.pub				\
-  tests/keys/ed25519-2.sec				\
-  tests/keys/ed25519-3.pub				\
-  tests/keys/ed25519-3.sec				\
-  tests/keys/ed25519.pub				\
-  tests/keys/ed25519.sec				\
-  tests/keys/rsa.pub					\
-  tests/keys/signing-key.pub				\
-  tests/keys/signing-key.sec				\
+  tests/keys/openpgp/civodul.pub			\
+  tests/keys/openpgp/dsa.pub				\
+  tests/keys/openpgp/ed25519-2.pub			\
+  tests/keys/openpgp/ed25519-2.sec			\
+  tests/keys/openpgp/ed25519-3.pub			\
+  tests/keys/openpgp/ed25519-3.sec			\
+  tests/keys/openpgp/ed25519.pub			\
+  tests/keys/openpgp/ed25519.sec			\
+  tests/keys/openpgp/rsa.pub				\
+  tests/keys/openpgp/signing-key.pub			\
+  tests/keys/openpgp/signing-key.sec			\
   tests/test.drv					\
   $(TESTS)
 

NEWS

@@ -17,6 +17,7 @@ Please send Guix bug reports to bug-guix@gnu.org.
 * Changes in 1.6.0 (since 1.5.0)
 ** Distribution
 *** GNOME updated to version 48
+*** New service for Fossil SCM
 
 * Changes in 1.5.0 (since 1.4.0)
 ** Package management

build-aux/test-env.in

@@ -73,8 +73,8 @@ then
 	# Copy the keys so that the secret key has the right permissions (the
 	# daemon errors out when this is not the case.)
 	mkdir -p "$GUIX_CONFIGURATION_DIRECTORY"
-	cp "@abs_top_srcdir@/tests/keys/signing-key.sec"	\
-	   "@abs_top_srcdir@/tests/keys/signing-key.pub"	\
+	cp "@abs_top_srcdir@/tests/keys/openpgp/signing-key.sec"	\
+	   "@abs_top_srcdir@/tests/keys/openpgp/signing-key.pub"	\
 	   "$GUIX_CONFIGURATION_DIRECTORY"
 	chmod 400 "$GUIX_CONFIGURATION_DIRECTORY/signing-key.sec"
     fi

doc/guix.texi

@@ -2658,9 +2658,11 @@ bootloaders.
 
 Once you are done partitioning the target hard disk drive, you have to
 create a file system on the relevant partition(s)@footnote{Currently
-Guix System only supports ext4, btrfs, JFS, F2FS, and XFS file systems.  In
-particular, code that reads file system UUIDs and labels only works for these
-file system types.}.  For the ESP, if you have one and assuming it is
+Guix System supports only ext4, btrfs, bcachefs, JFS, F2FS, and XFS
+file systems.  In particular, code that reads file system UUIDs and
+labels works only for these file system types.  For bcachefs, also add
+the @code{bcachefs-linux-module} to your @code{operating-system}'s
+@code{initrd-modules}.}.  For the ESP, if you have one and assuming it is
 @file{/dev/sda1}, run:
 
 @example
@@ -19146,6 +19148,10 @@ swap file is encrypted because the entire device is encrypted.
 @xref{Swap Space}, or @xref{Preparing for Installation,,Disk
 Partitioning}, for an example.
 
+When using GRUB as the bootloader, the LUKS password is only requested
+once: GRUB passes the master key to the initial RAM disk automatically.
+@xref{Bootloader Configuration, Automatic LUKS Master Key Passing}, for
+details.
 
 @end defvar
 
@@ -27015,6 +27021,32 @@ Deprecated option.
 @end deftp
 
 
+@c %end of fragment
+
+@defvar gardenhostd-service-type
+Type for the service that runs gardenhostd, a partial implementation of
+the systemd-hostnamed daemon.  It provides the org.freedesktop.hostname1
+D-Bus interface, which helps applications like gnome-control-center
+retrieve and modify the system’s hostname, as well as set a pretty
+hostname for display.
+
+The value for this service is a @code{<gardenhostd-configuration>} object.
+@end defvar
+
+@c %start of fragment
+
+@deftp {Data Type} gardenhostd-configuration
+Available @code{gardenhostd-configuration} fields are:
+
+@table @asis
+@item @code{gardenhostd} (default: @code{gardenhostd}) (type: package)
+The gardenhostd package to use.
+
+@end table
+
+@end deftp
+
+
 @c %end of fragment
 
 @defvar accountsservice-service-type
@@ -36561,13 +36593,14 @@ in @code{Nginx}.  It is used to generate cat avatar from a seed, for instance
 the hash of a user's email address.
 
 @deffn {Procedure} cat-avatar-generator-service @
-       [#:cache-dir "/var/cache/cat-avatar-generator"] @
+       [#:cache-dir "/var/cache/cat-avatar-generator/"] @
        [#:package cat-avatar-generator] @
        [#:configuration (nginx-server-configuration)]
 Returns an nginx-server-configuration that inherits @code{configuration}.  It
 extends the nginx configuration to add a server block that serves @code{package},
 a version of cat-avatar-generator.  During execution, cat-avatar-generator will
-be able to use @code{cache-dir} as its cache directory.
+be able to use @code{cache-dir} as its cache directory, which must end
+with a slash, be created manually, and be writable by php-fpm.
 @end deffn
 
 A simple setup for cat-avatar-generator can look like this:
@@ -44243,10 +44276,11 @@ behind a reverse proxy and serve repositories from a custom location.
 (service fossil-service-type
          (fossil-configuration
           (repository "/srv/museum")
-          (repo-list? #t)
+          (list-repositories? #t)
           (base-url "https://museum.example")
-          (socket-file "/var/run/fossil.sock")
-          (compress? #f)))
+          (compress? #f)
+          (https? #t)
+          (socket-file "/var/run/fossil.sock")))
 @end lisp
 
 @deftp {Data Type} fossil-configuration
@@ -48392,9 +48426,10 @@ A string denoting the name service (@pxref{Services in the NSS
 configuration,,, libc, The GNU C Library Reference Manual}).
 
 Note that name services listed here must be visible to nscd.  This is
-achieved by passing the @code{#:name-services} argument to
-@code{nscd-service} the list of packages providing the needed name
-services (@pxref{Base Services, @code{nscd-service}}).
+achieved by providing the list of packages implementing the needed
+services via the @code{name-services} field of the
+@code{nscd-configuration} record to be used with the @code{nscd-service-type}
+service (@pxref{Base Services, @code{nscd-configuration}}).
 
 @item reaction
 An action specified using the @code{lookup-specification} macro
@@ -48837,49 +48872,56 @@ This option in enabled by default.  In some cases involving the
 in RAM, it can be handy to disable the option by setting it to
 @code{#f}.
 
+@subsubheading Automatic LUKS Master Key Passing
+
+When booting from a LUKS-encrypted device using GRUB, the password is
+normally requested twice: once by GRUB to access @file{/boot}, and a
+second time by the initial RAM disk to mount the root file system.
+
+When GRUB's @code{cryptomount} command unlocks a LUKS device, GRUB
+retains the volume's master key in memory.  The @code{cryptodisk}
+module exposes these master keys via a GRUB-internal virtual file
+system called @dfn{procfs}, accessible as @code{(proc)/luks_script}.
+Each line of this virtual file has the form:
+
+@example
+luks_mount @var{uuid} @var{offset} @var{sector-size} @var{cipher-mode-iv} @var{hex-master-key}
+@end example
+
+@noindent
+(or @code{luks2_mount} for LUKS2 volumes).
+
+When the store resides on an encrypted device, the generated GRUB
+configuration automatically injects this virtual file into the initial
+RAM disk using GRUB's @code{newc:} initrd prefix---a documented
+mechanism for synthesizing a CPIO archive on the fly
+(@pxref{GNU/Linux,,, grub, GNU GRUB manual}).  The resulting initrd
+line is equivalent to:
+
+@example
+initrd newc:etc/luks_script:(proc)/luks_script @dots{} /boot/initrd
+@end example
+
+@noindent
+The initial RAM disk then reads @file{/etc/luks_script}, looks up the
+matching UUID, and calls @command{cryptsetup open --volume-key-file} to
+unlock the device without prompting for a password a second time.  If
+the master key is missing or does not match, the system falls back to
+an interactive password prompt, so this mechanism is transparent to the
+user.
+
+No configuration is required: GRUB's @code{procfs} and @code{luks}
+modules are loaded automatically when encrypted devices are declared
+via @code{luks-device-mapping} (@pxref{Mapped Devices}).
+
 @item @code{extra-initrd} (default: @code{#f})
 File name of an additional initrd to load during the boot.  It may or
 may not point to a file in the store, but the main use case is for
 out-of-store files containing secrets.
 
-In order to be able to provide decryption keys for LUKS devices, they
-need to be available in the initial RAM disk.  However they cannot be
-stored inside the usual initrd, since it is stored in the store and
-being world-readable (as files in the store are) is not a desired
-property for an initrd containing decryption keys.  You can therefore
-use this field to instruct GRUB to also load a manually created initrd
-not stored in the store.
-
 For any use case not involving secrets, you should use regular initrd
 (@pxref{operating-system Reference, @code{initrd}}) instead.
 
-Suitable image can be created for example like this:
-
-@example
-echo /key-file.bin | cpio -oH newc >/key-file.cpio
-chmod 0000 /key-file.cpio
-@end example
-
-After it is created, you can use it in this manner:
-
-@lisp
-;; Operating system with encrypted boot partition
-(operating-system
-  @dots{}
-  (bootloader (bootloader-configuration
-               (bootloader grub-efi-bootloader)
-               (targets '("/boot/efi"))
-               ;; Load the initrd with a key file...
-               (extra-initrd "/key-file.cpio")))
-  (mapped-devices
-   (list (mapped-device
-          (source (uuid "12345678-1234-1234-1234-123456789abc"))
-          (target "my-root")
-          (type luks-device-mapping)
-          ;; ... and use it to unlock the root device.
-          (arguments '(#:key-file "/key-file.bin"))))))
-@end lisp
-
 Be careful when using this option, since pointing to a file that is not
 readable by the grub while booting will cause the boot to fail and
 require a manual edit of the initrd line in the grub menu.

etc/news.scm

@@ -46,7 +46,8 @@
  (entry (commit "a7c8e68dc51144a6d3981b770aca9c4897fc7c0c")
         (title
          (en "Records can refer to inherited values of thunked fields")
-         (de "Vererbung in Verbundsobjekten erlaubt Verweise auf geerbte Werte verzögert ausgewerteter Felder"))
+         (de "Vererbung in Verbundsobjekten erlaubt Verweise auf geerbte Werte verzögert ausgewerteter Felder")
+         (pt "Registros podem referir-se a valores herdados de campos ainda não evaluados (thunks)"))
         (body
          (en "A new feature has been added to records—the facility used when
 defining packages, services, operating systems, and many other things—that,
@@ -114,7 +115,42 @@ Verbundstypen aus, die mit @code{define-record-type*} erstellt wurden:
 und so weiter.
 
 Hinweis: das ist eine inkompatible Änderung. Die neu eingeführte Bindung –
-@code{inputs} im obigen Beispiel – kann gleichnamige Bindungen überschatten.")))
+@code{inputs} im obigen Beispiel – kann gleichnamige Bindungen überschatten.")
+         (pt "Um novo recurso foi adicionado aos registros - a ferramenta
+usada quando se definem pacotes, serviços, sistemas operacionais, e muitas
+outras coisas - que, quando herdados de outro registro, te permitem referir
+aos valores de campos herdados.  Durante a definição de variantes de pacotes,
+você pode encontrar este padrão:
+
+@lisp
+(package
+  (inherit gdb)
+  (inputs (modify-inputs (package-inputs gdb)
+            (delete \"guile\"))))
+@end lisp
+
+Agora isto pode ser escrito desta forma:
+
+@lisp
+(package
+  (inherit gdb)
+  (inputs (modify-inputs inputs ;<- Note a modificação
+            (delete \"guile\"))))
+@end lisp
+
+Dentro do corpo de @code{inputs}, o identificador @code{inputs} agora está
+atrelado ao @dfn{valor herdado} - id est, ap valor que este campo herda de
+@code{gdb}.  O mesmo mecanismo pode ser empregado ao modificar outros campos
+da entrada ou ao campo @code{arguments}.  É menos verboso mas também
+@uref{https://issues.guix.gnu.org/50335, é mais preciso}.
+
+Esta mudança se aplica aos campos \"thunk-ados\" de todos os tipos de registro
+produzidos por @code{define-record-type*}: @code{package}, @code{origin},
+@code{operating-system}, @code{home-environment}, e assim por diante.
+
+Note que esta é uma modificação incompatível: as ligações introduzidas
+recentemente - @code{inputs} no exemplo acima - podem sombrear ligações de
+mesmo nome.")))
 
  (entry (commit "b52ce9041ad58aeababd2d50d3e72bc23dffff60")
         (title

etc/teams.scm

@@ -786,7 +786,8 @@ the haskell-build-system."
   (team 'hpc
         #:name "High-performance computing team"
         #:description "High-performance computing (HPC) related packages."
-        #:scope (list "gnu/packages/mpi.scm"
+        #:scope (list "gnu/packages/fabric-management.scm"
+                      "gnu/packages/mpi.scm"
                       "gnu/packages/oneapi.scm"
                       "gnu/packages/opencl.scm"
                       "gnu/packages/parallel.scm"
@@ -991,8 +992,7 @@ perl-build-system as well as the rakudo-build-system."
         #:description
         "Quality assurance software (CI/CD, testing, analysis;
 no direct relation to Guix's QA)."
-        #:scope (list "gnu/ci.scm"
-                      "gnu/packages/benchmark.scm"
+        #:scope (list "gnu/packages/benchmark.scm"
                       "gnu/packages/check.scm"
                       "gnu/packages/ci.scm"
                       "gnu/packages/code.scm"

etc/teams/hpc/mpi-manifest.scm

@@ -0,0 +1,44 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2026 Ludovic Courtès <ludo@gnu.org>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
+
+;; This manifest lists all MPI-related packages: useful for 'guix refresh',
+;; 'guix build', etc.
+
+(use-modules (guix)
+             (gnu packages fabric-management)
+             (gnu packages linux)
+             (gnu packages mpi)
+             (gnu packages parallel))
+
+;; The packages below are what constitutes the MPI stack: helper libraries,
+;; interconnect drivers, and MPI implementations.
+(packages->manifest
+ (list cassini-headers
+       cxi-driver
+       hwloc
+       libcxi
+       libfabric
+       mpich
+       openmpi-5
+       openpmix
+       opensm
+       prrte
+       psm
+       psm2
+       rdma-core
+       ucx))

gnu/bootloader/grub.scm

@@ -404,7 +404,10 @@ when booting a root file system on a Btrfs subvolume."
               (initrd (normalize-file (menu-entry-initrd entry)
                                       device-mount-point
                                       store-directory-prefix))
-              (extra-initrd (bootloader-configuration-extra-initrd config)))
+              (extra-initrd (bootloader-configuration-extra-initrd config))
+              (luks-script-initrd
+               (and (pair? store-crypto-devices)
+                    "newc:etc/luks_script:(proc)/luks_script")))
           ;; Here DEVICE is the store and DEVICE-MOUNT-POINT is its mount point.
           ;; Use the right file names for LINUX and INITRD in case
           ;; DEVICE-MOUNT-POINT is not "/", meaning that the store is on a
@@ -412,14 +415,20 @@ when booting a root file system on a Btrfs subvolume."
 
           ;; When STORE-DIRECTORY-PREFIX is defined, prepend it the linux and
           ;; initrd paths, to allow booting from a Btrfs subvolume.
+
+          ;; When the store is on an encrypted device, inject GRUB's
+          ;; (proc)/luks_script into the initrd as /etc/luks_script so the
+          ;; initrd can use the already-decrypted master key to open LUKS
+          ;; volumes without prompting for the password a second time.
           #~(format port "menuentry ~s {
   ~a
   linux ~a ~a
-  initrd ~a ~a
+  initrd ~a ~a ~a
 }~%"
                     #$label
                     #$(grub-root-search device linux)
                     #$linux (string-join (list #$@arguments))
+                    (or #$luks-script-initrd "")
                     (or #$extra-initrd "")
                     #$initrd)))
        (multiboot-kernel
@@ -464,7 +473,7 @@ menuentry ~s {
           ;; Other type of devices aren't implemented.
           #~()))
     (let ((devices (map crypto-device->cryptomount store-crypto-devices))
-          (modules #~(format port "insmod luks~%insmod luks2~%")))
+          (modules #~(format port "insmod procfs~%insmod luks~%insmod luks2~%")))
       (if (null? devices)
           devices
           (cons modules devices))))

gnu/build/file-systems.scm

@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014-2018, 2020-2022 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2014-2018, 2020-2022, 2026 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2016, 2017 David Craven <david@craven.ch>
 ;;; Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
 ;;; Copyright © 2019 Guillaume Le Vaillant <glv@posteo.net>
@@ -1455,9 +1455,14 @@ corresponds to the symbols listed in FLAGS."
                (raise c)))
             ((system-error? c)
              (format (current-error-port)
-                     "could not mount partition ~a: ~a~%"
+                     "could not mount partition '~a': ~a~%"
                      (file-system-device fs)
-                     (exception-message c))
+                     (string-trim-both
+                      (call-with-output-string
+                        (lambda (port)
+                          (print-exception port #f
+                                           (exception-kind c)
+                                           (exception-args c))))))
              (unless (file-system-mount-may-fail? fs)
                (raise c))))
       (let* ((type    (file-system-type fs))

gnu/home/services/niri.scm

@@ -19,6 +19,7 @@
 (define-module (gnu home services niri)
   #:use-module (gnu home services)
   #:use-module (gnu home services shepherd)
+  #:use-module (gnu home services desktop)
   #:use-module (gnu packages bash)
   #:use-module (gnu packages freedesktop)
   #:use-module (gnu packages glib)
@@ -40,14 +41,15 @@
 
 (define (home-niri-shepherd-service config)
   "Return a shepherd service that runs Niri, a scrollable tiling Wayland
-compositor.  The service starts Niri in a DBus session with appropriate
-environment variables set for a Wayland desktop session."
+compositor.  The service starts Niri with appropriate environment variables
+set for a Wayland desktop session."
   (list (shepherd-service
           (documentation "Run Niri scrollable tiling Wayland compositor.")
           (provision '(niri))
+          (requirement '(dbus))
           (start #~(make-forkexec-constructor
                     (list #$(file-append bash "/bin/bash") "-l"
-                          "-c" "exec dbus-run-session niri --session")
+                          "-c" "exec niri --session")
                     #:environment-variables
                     (append (list #$@(niri-configuration-environment-variables config))
                             '("DESKTOP_SESSION=niri"
@@ -66,6 +68,8 @@ environment variables set for a Wayland desktop session."
    (extensions
     (list (service-extension home-shepherd-service-type
                              home-niri-shepherd-service)
+          (service-extension home-dbus-service-type
+                             (const '()))
           (service-extension home-profile-service-type
                              (lambda (config)
                                (list dbus

gnu/local.mk

@@ -423,6 +423,7 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/kde-utils.scm			\
   %D%/packages/kerberos.scm			\
   %D%/packages/kodi.scm				\
+  %D%/packages/kubernetes.scm	        	\
   %D%/packages/language.scm			\
   %D%/packages/lc0.scm			\
   %D%/packages/lean.scm				\
@@ -1169,6 +1170,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/curlftpfs-fix-memory-leak.patch		\
   %D%/packages/patches/curlftpfs-fix-no_verify_hostname.patch	\
   %D%/packages/patches/cursynth-wave-rand.patch			\
+  %D%/packages/patches/cvc5-reproducible-build.patch		\
   %D%/packages/patches/cvs-CVE-2017-12836.patch		\
   %D%/packages/patches/cyrus-sasl-fix-time-h.patch              \
   %D%/packages/patches/d-feet-drop-unused-meson-argument.patch	\
@@ -1650,7 +1652,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/inkscape-libxml2.patch		\
   %D%/packages/patches/instead-use-games-path.patch		\
   %D%/packages/patches/intltool-perl-compatibility.patch	\
-  %D%/packages/patches/inetutils-hurd64.patch			\
   %D%/packages/patches/insight-toolkit-fix-build.patch			\
   %D%/packages/patches/irrlicht-use-system-libs.patch		\
   %D%/packages/patches/irrlicht-link-against-needed-libs.patch	\
@@ -1682,7 +1683,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/jfsutils-gcc-compat.patch		\
   %D%/packages/patches/jfsutils-include-systypes.patch		\
   %D%/packages/patches/john-the-ripper-jumbo-with-gcc-11.patch	\
-  %D%/packages/patches/json-c-0.12-CVE-2020-12762.patch		\
   %D%/packages/patches/json-c-0.13-CVE-2020-12762.patch		\
   %D%/packages/patches/jsonnet-include-cstdint-for-gcc-13-builds.patch	\
   %D%/packages/patches/julia-SOURCE_DATE_EPOCH-mtime.patch	\
@@ -1754,6 +1754,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/kwin-unwrap-executable-name-for-dot-desktop-search.patch\
   %D%/packages/patches/laby-make-install.patch			\
   %D%/packages/patches/laby-use-tmpdir-from-runtime.patch	\
+  %D%/packages/patches/ldc-i686-int128-alignment.patch 		\
   %D%/packages/patches/ldns-drill-examples.patch		\
   %D%/packages/patches/leela-zero-gtest.patch			\
   %D%/packages/patches/less-hurd-path-max.patch			\
@@ -1807,7 +1808,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/libqalculate-3.8.0-libcurl-ssl-fix.patch	\
   %D%/packages/patches/libquicktime-ffmpeg.patch 		\
   %D%/packages/patches/libsepol-versioned-docbook.patch		\
-  %D%/packages/patches/libskk-fix-invalid-escape.patch		\
   %D%/packages/patches/libsoup-auth-digest-fix-crash.patch      \
   %D%/packages/patches/libsoup-deadlock-in-add_listener_in_thread.patch \
   %D%/packages/patches/libsoup-fix-merge-of-ranges.patch        \
@@ -1975,6 +1975,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/netsurf-y2038-tests.patch		\
   %D%/packages/patches/netsurf-longer-test-timeout.patch	\
   %D%/packages/patches/nhc98-c-update.patch			\
+  %D%/packages/patches/nheko-0-12-1-fix-rendering-replies.patch	\
   %D%/packages/patches/nix-dont-build-html-doc.diff		\
   %D%/packages/patches/nfs4-acl-tools-0.3.7-fixpaths.patch	\
   %D%/packages/patches/network-manager-plugin-ownership.patch	\
@@ -2333,7 +2334,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/rapidcheck-fix-libs.patch		\
   %D%/packages/patches/ratpoison-shell.patch			\
   %D%/packages/patches/retroarch-unbundle-spirv-cross.patch	\
-  %D%/packages/patches/rct-add-missing-headers.patch		\
   %D%/packages/patches/readline-link-ncurses.patch		\
   %D%/packages/patches/renpy-python-3.11-compat.patch			\
   %D%/packages/patches/renpy-fix-integer-slots.patch			\
@@ -2343,7 +2343,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/r-sapa-lapack.patch			\
   %D%/packages/patches/ripperx-missing-file.patch		\
   %D%/packages/patches/rpcbind-CVE-2017-8779.patch		\
-  %D%/packages/patches/rtags-separate-rct.patch			\
   %D%/packages/patches/rtosc-0.3.1-fix-invalid-comparison-operator.patch	\
   %D%/packages/patches/racket-chez-scheme-bin-sh.patch		\
   %D%/packages/patches/racket-launcher-config-dir.patch		\
@@ -2376,7 +2375,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/ruby-flores-fix-deprecations.patch	\
   %D%/packages/patches/ruby-latex-decode-fix-test.patch		\
   %D%/packages/patches/ruby-mustache-1.1.1-fix-race-condition-tests.patch \
-  %D%/packages/patches/ruby-pg-fix-connect-timeout.patch	\
   %D%/packages/patches/ruby-x25519-automatic-fallback-non-x86_64.patch \
   %D%/packages/patches/rust-1.64-fix-riscv64-bootstrap.patch	\
   %D%/packages/patches/rust-1.70-fix-rustix-build.patch	\
@@ -2467,6 +2465,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/t4k-common-libpng16.patch		\
   %D%/packages/patches/tao-add-missing-headers.patch		\
   %D%/packages/patches/tao-fix-parser-types.patch		\
+  %D%/packages/patches/tao-synth-include-string-you-use.patch		\
   %D%/packages/patches/tar-remove-wholesparse-check.patch	\
   %D%/packages/patches/tar-skip-unreliable-tests.patch		\
   %D%/packages/patches/taskwarrior-link-taskchampion-cpp-with-sqlite3.patch \

gnu/packages.scm

@@ -518,8 +518,9 @@ return its return value."
                 (location->string (package-location pkg))))
      (match (package-superseded pkg)
        ((? package? new)
-        (info (G_ "package '~a' has been superseded by '~a'~%")
-              (package-name pkg) (package-name new))
+        (unless (assoc-ref (package-properties pkg) 'supress-supersession-info?)
+          (info (G_ "package '~a' has been superseded by '~a'~%")
+                (package-name pkg) (package-name new)))
         new)
        (#f
         pkg)))

gnu/packages/admin.scm

@@ -1302,14 +1302,14 @@ re-executing them as necessary.")
 (define-public inetutils
   (package
     (name "inetutils")
-    (version "2.5")
+    (version "2.7")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://gnu/inetutils/inetutils-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "0q1257ci22g2jbdiqs00mharc1lqkbibdlkhj23f3si6qjxkn17s"))))
+                "11n01vsd51r7qraaaylhhx04hq4s6vcq0896zkz0yp1wvqfbwmm1"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -1340,17 +1340,7 @@ re-executing them as necessary.")
                              "\\\""))
       ;; On some systems, 'libls.sh' may fail with an error such as:
       ;; "Failed to tell switch -a apart from -A".
-      #:parallel-tests? #f
-      #:phases (if (target-hurd64?)
-                   #~(modify-phases %standard-phases
-                       (add-after 'unpack 'apply-hurd64-patch
-                         (lambda _
-                           (let ((patch
-                                  #$(local-file
-                                     (search-patch
-                                      "inetutils-hurd64.patch"))))
-                             (invoke "patch" "--force" "-p1" "-i" patch)))))
-                   #~%standard-phases)))
+      #:parallel-tests? #f))
     (inputs
      (list coreutils
            shadow                     ;for login (used in telnetd and rlogind)
@@ -1373,7 +1363,7 @@ hostname.")
 (define-public shadow
   (package
     (name "shadow")
-    (version "4.13")
+    (version "4.19.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1381,7 +1371,7 @@ hostname.")
                     "download/" version "/shadow-" version ".tar.xz"))
               (sha256
                (base32
-                "0b6xz415b4y3y5nk3pw9xibv05kln4cjbmhybyncmrx2g5fj9zls"))))
+                "0crbcfdp7ayyii33srinwd0yr27dkx9mbzglx1d0mvhr1z28xclw"))))
     (build-system gnu-build-system)
     (arguments
      `(;; Assume System V `setpgrp (void)', which is the default on GNU
@@ -1390,7 +1380,9 @@ hostname.")
        '(,@(if (target-hurd?)
              '()
              '("--with-libpam"))
-          "shadow_cv_logdir=/var/log"
+         "--disable-logind" ;; no systemd
+         "--without-libbsd" ;; no libbsd
+         "shadow_cv_logdir=/var/log"
           "ac_cv_func_setpgrp_void=yes")
        #:phases
        (modify-phases %standard-phases
@@ -1426,15 +1418,8 @@ hostname.")
              ;; The top-level Makefile.am wrongfully has "SUBDIRS += man"
              ;; under "if ENABLE_REGENERATE_MAN", even though prebuilt man
              ;; pages are available.  Thus, install them manually.
-             (invoke "make" "-C" "man" "install")))
-         (add-after 'install-man-pages 'remove-groups
-           (lambda* (#:key outputs #:allow-other-keys)
-             ;; Remove `groups', which is already provided by Coreutils.
-             (let* ((out (assoc-ref outputs "out"))
-                    (bin (string-append out "/bin"))
-                    (man (string-append out "/share/man")))
-               (delete-file (string-append bin "/groups"))
-               (for-each delete-file (find-files man "^groups\\."))))))))
+             (invoke "make" "-C" "man" "install"))))))
+    (native-inputs (list pkg-config))
     (inputs
      (append (if (target-hurd?)
                  '()
@@ -3156,7 +3141,7 @@ track changes in important system configuration files.")
 (define-public libcap-ng
   (package
     (name "libcap-ng")
-    (version "0.9")
+    (version "0.9.3")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -3165,12 +3150,20 @@ track changes in important system configuration files.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0izrrh2kmhi6dcy5iqcccmx90nwlaqcglhc60sl8n5ds8il14pi8"))))
+                "13iy7dddcslpmmdhybgvfcgznsvpaa4r3fp9ldlpkq592lw8yyva"))))
     (build-system gnu-build-system)
     (arguments
-     `(#:configure-flags
-       (list "--disable-static"
-             "--without-python")))
+     (list
+      #:configure-flags
+      #~(list "--disable-static"
+              "--without-python")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'patch-configure-ac
+            (lambda _
+              (substitute* "configure.ac"
+                (("linux/sock_diag.h" all)
+                 (string-append all " \\"))))))))
     (inputs
      (list libbpf))
     (native-inputs
@@ -4988,16 +4981,16 @@ Python loading in HPC environments.")
   (let ((real-name "inxi"))
     (package
       (name "inxi-minimal")
-      (version "3.3.31-2")
+      (version "3.3.40-1")
       (source
        (origin
          (method git-fetch)
          (uri (git-reference
-               (url "https://github.com/smxi/inxi")
+               (url "https://codeberg.org/smxi/inxi")
                (commit version)))
          (file-name (git-file-name real-name version))
          (sha256
-          (base32 "1fca5minalpmizbxh5kmjiv8xrl7k6g91zn8d84fxmbhsk8vn3kk"))))
+          (base32 "0ivj0dcx7d2hmmkhyql156sb08385rzw640z9kyq4cv1n8ndz58s"))))
       (build-system trivial-build-system)
       (inputs
        (list bash-minimal
@@ -5023,8 +5016,8 @@ Python loading in HPC environments.")
            (copy-recursively (assoc-ref %build-inputs "source")
                              ,(string-append real-name "-" version))
            (with-directory-excursion ,(string-append real-name "-" version)
-             (with-fluids ((%default-port-encoding #f))
-               (substitute* "inxi" (("/usr/bin/env perl") (which "perl"))))
+             (patch-shebang "inxi" (list (dirname (search-input-file
+                                                    %build-inputs "bin/perl"))))
              (let ((bin (string-append %output "/bin")))
                (install-file "inxi" bin)
                (wrap-program (string-append bin "/inxi")
@@ -5039,7 +5032,8 @@ Python loading in HPC environments.")
                                    ((member name '("util-linux"))
                                     (string-append (store-append "/bin") ":"
                                                    (store-append "/sbin")))
-                                   ((member name '("dmidecode" "iproute2"))
+                                   ((member name '("dmidecode" "iproute2" "lvm2"
+                                                   "mdadm"))
                                     (store-append "/sbin"))
                                    (else (store-append "/bin")))))))
                            %build-inputs)))
@@ -5067,6 +5061,7 @@ support forum.  It runs with the @code{/exec} command in most IRC clients.")
     (name "inxi")
     (inputs
      `(("dmidecode" ,dmidecode)
+       ("eudev" ,eudev)
        ("file" ,file)
        ("bind:utils" ,isc-bind "utils") ; dig
        ("gzip" ,gzip)
@@ -5092,11 +5087,14 @@ support forum.  It runs with the @code{/exec} command in most IRC clients.")
        ("perl-time-hires" ,perl-time-hires)
        ("lvm2" ,lvm2)                   ; lvs
        ("mdadm" ,mdadm)
+       ("wayland-utils" ,wayland-utils)
        ;; TODO: Add more inputs:
        ;; ipmi-sensors
        ;; hddtemp
        ;; perl-xml-dumper
        ;; ipmitool
+       ;; wlr-randr
+       ;; vulkan-tools
        ,@(package-inputs inxi-minimal)))))
 
 (define-public pscircle
@@ -5602,69 +5600,61 @@ representation to stdout.")
 (define-public hosts
   (package
     (name "hosts")
-    (version "3.6.3")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url "https://github.com/xwmx/hosts")
-                    (commit version)))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "1ni4z89kxzgwm26hhx908g04f2h0fypy7lgfa0rvsz8d0wslgcsn"))))
-    (build-system trivial-build-system)
+    (version "3.6.5")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/xwmx/hosts")
+              (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1kzd4lxlflam87dhbx1jx7bj6v6sa4f2024mfxj2768kp9qapraj"))))
+    (build-system copy-build-system)
+    (native-inputs
+     (list bats)) ;for tests
     (inputs
-     `(("bats" ,bats) ;for test
-       ("awk" ,gawk)
-       ("bash" ,bash)
-       ("coreutils" ,coreutils)
-       ("diffutils" ,diffutils)
-       ("grep" ,grep)
-       ("ncurses" ,ncurses) ;tput
-       ("sed" ,sed)))
+     (list gawk
+           bash-minimal
+           coreutils
+           diffutils
+           grep
+           ncurses ;for tput
+           sed))
     (arguments
-     `(#:modules ((guix build utils))
-       #:builder
-       (begin
-         (use-modules (guix build utils))
-         ;; copy source
-         (copy-recursively (assoc-ref %build-inputs "source") ".")
-         ;; patch-shebang phase
-         (setenv "PATH"
-                 (string-append (assoc-ref %build-inputs "bash") "/bin"
-                                ":" (assoc-ref %build-inputs "awk") "/bin"
-                                ":" (assoc-ref %build-inputs "coreutils") "/bin"
-                                ":" (assoc-ref %build-inputs "diffutils") "/bin"
-                                ":" (assoc-ref %build-inputs "grep") "/bin"
-                                ":" (assoc-ref %build-inputs "ncurses") "/bin"
-                                ":" (assoc-ref %build-inputs "sed") "/bin"
-                                ":" "/run/privileged/bin"
-                                ":" (getenv "PATH")))
-         (substitute* "hosts"
-           (("#!/usr/bin/env bash")
-            (string-append "#!" (which "bash")
-                           "\nPATH=" (getenv "PATH"))))
-         ;; check phase
-         (setenv "TERM" "linux") ;set to tty for test
-         (invoke (search-input-file %build-inputs "/bin/bats")
-                 "test")
-         ;; install phase
-         (install-file "hosts" (string-append %output "/bin"))
-         (let ((bash-completion
-                (string-append %output "/etc/bash_completion.d")))
-           (mkdir-p bash-completion)
-           (copy-file "etc/hosts-completion.bash"
-                      (string-append bash-completion "/hosts")))
-         (let ((zsh-completion
-                (string-append %output "/share/zsh/site-functions")))
-           (mkdir-p zsh-completion)
-           (copy-file "etc/hosts-completion.zsh"
-                      (string-append zsh-completion "/_hosts")))
-         (let ((doc (string-append %output "/share/doc/" ,name "-" ,version)))
-           (mkdir-p doc)
-           (install-file "LICENSE" doc)
-           (install-file "README.md" doc))
-         #t)))
+     (list
+      #:install-plan
+      #~'(("hosts" "bin/hosts")
+          ("etc/hosts-completion.bash" "/etc/bash_completion.d/hosts")
+          ("etc/hosts-completion.zsh" "/share/zsh/site-functions/_hosts")
+          ("README.md"
+           #$(string-append "/share/doc/" name "-" version "/README.md")))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'patch-hosts
+            (lambda* (#:key inputs #:allow-other-keys)
+              (substitute* "test/test_helper.bash"
+                (("export _HOSTS=.*")
+                 (string-append "export _HOSTS=" #$output "/bin/hosts")))
+              (substitute* (cons* "hosts"
+                            ;; *.bash and *.bats.
+                            (find-files "test" "\\.bat?sh?.*$"))
+                (("\\btput\\b") (search-input-file inputs "bin/tput"))
+                (("\\bsed\\b") (search-input-file inputs "bin/sed"))
+                (("\\bawk\\b") (search-input-file inputs "bin/awk"))
+                (("\\bgrep\\b") (search-input-file inputs "bin/grep"))
+                (("\\bdiff\\b") (search-input-file inputs "bin/diff"))
+                (("\\bcp\\b") (search-input-file inputs "bin/cp"))
+                (("\\bchmod\\b") (search-input-file inputs "bin/chmod")))))
+          (add-after 'install 'check
+            (lambda* (#:key tests? inputs #:allow-other-keys)
+              (if tests?
+                  (begin
+                    (delete-file "hosts") ;Ensure installed hosts is checked.
+                    (setenv "PATH" "") ;Ensure substitutions were correct.
+                    (setenv "TERM" "linux") ;Set to tty for test.
+                    (invoke (search-input-file inputs "/bin/bats")
+                            "test"))))))))
     (home-page "https://github.com/xwmx/hosts/")
     (synopsis "Script for editing a foreign distro's @file{/etc/hosts} file")
     (description "Hosts is a command line program for managing

gnu/packages/adns.scm

@@ -4,6 +4,7 @@
 ;;; Copyright © 2018 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2019, 2021 Marius Bakke <marius@gnu.org>
 ;;; Copyright © 2023 Janneke Nieuwenhuizen <janneke@gnu.org>
+;;; Copyright © 2026 Anderson Torres <anderson.torres.8519@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -21,49 +22,52 @@
 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
 
 (define-module (gnu packages adns)
-  #:use-module (guix gexp)
-  #:use-module (guix licenses)
-  #:use-module (guix packages)
-  #:use-module (guix download)
-  #:use-module (guix utils)
+  #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (gnu packages m4)
+  #:use-module (gnu packages pkg-config)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
-  #:use-module (gnu packages m4)
-  #:use-module (gnu packages pkg-config))
+  #:use-module (guix download)
+  #:use-module (guix git-download)
+  #:use-module (guix gexp)
+  #:use-module (guix packages)
+  #:use-module (guix utils))
 
 (define-public adns
   (package
     (name "adns")
     (version "1.6.1")
-    (source (origin
-              (method url-fetch)
-              (uri (list (string-append "mirror://gnu/adns/adns-"
-                                        version ".tar.gz")
-                         (string-append
-                           "https://www.chiark.greenend.org.uk/~ian/adns/ftp/adns-"
-                           version ".tar.gz")))
-              (sha256
-               (base32
-                "1k81sjf0yzv6xj35vcxp0ccajxrhhmyly7a57xlbs1kmkdwb6f3i"))))
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "git://git.chiark.greenend.org.uk/~ianmdlvl/adns.git")
+              (commit (string-append "adns-" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "0ln3l5j7wb1xazrzl76p9xar52p6l2k1cwy7jazxw1acl71k9h5n"))))
     (build-system gnu-build-system)
     (arguments
-     ;; Make sure the programs under bin/ fine libadns.so.
-     '(#:configure-flags (list (string-append "LDFLAGS=-Wl,-rpath -Wl,"
-                                              (assoc-ref %outputs "out")
-                                              "/lib"))
-
-       ;; XXX: Tests expect real name resolution to work.
-       #:tests? #f))
+     (list
+      ;; INFO: Tests expect real name resolution to work.
+      #:tests? #f
+      #:configure-flags
+      #~(list
+         ;; Make sure the programs under bin/ find libadns.so.
+         (string-append "LDFLAGS=-Wl,-rpath -Wl,"
+                        #$output:out
+                        "/lib"))))
     (native-inputs
      (list m4))
     (home-page "https://www.gnu.org/software/adns/")
     (synopsis "Asynchronous DNS client library and utilities")
     (description
-     "GNU adns is a C library that provides easy-to-use DNS resolution
-functionality.  The library is asynchronous, allowing several concurrent
-calls.  The package also includes several command-line utilities for use in
-scripts.")
-    (license gpl3+)))
+     "GNU adns is a C library that provides easy-to-use @acronym{DNS, Domain
+Name System} resolution functionality.  The library is asynchronous, allowing
+several concurrent calls.  The package also includes several command-line
+utilities for use in scripts.")
+    (license license:gpl3+)))
 
 (define-public c-ares
   (package
@@ -146,7 +150,7 @@ asynchronously.  It is intended for applications which need to perform DNS
 queries without blocking, or need to perform multiple DNS queries in parallel.
 The primary examples of such applications are servers which communicate with
 multiple clients and programs with graphical user interfaces.")
-    (license (x11-style "https://c-ares.haxx.se/license.html"))))
+    (license (license:x11-style "https://c-ares.haxx.se/license.html"))))
 
 (define-public c-ares-for-node-lts
   (hidden-package c-ares))

gnu/packages/algebra.scm

@@ -1,7 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2022, 2023, 2024, 2025 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2013, 2015, 2017, 2018, 2021 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2016-2025 Nicolas Goaziou <mail@nicolasgoaziou.fr>
+;;; Copyright © 2016-2026 Nicolas Goaziou <mail@nicolasgoaziou.fr>
 ;;; Copyright © 2014, 2018 Mark H Weaver <mhw@netris.org>
 ;;; Copyright © 2016, 2018, 2019, 2021, 2023 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2017, 2020-2022 Efraim Flashner <efraim@flashner.co.il>
@@ -406,7 +406,7 @@ precision.")
 (define-public giac
   (package
     (name "giac")
-    (version "2.0.0-10")
+    (version "2.0.0-21")
     (source
      (origin
        (method url-fetch)
@@ -418,7 +418,7 @@ precision.")
               "https://www-fourier.ujf-grenoble.fr/~parisse/debian/dists/"
               "stable/main/source/giac_" version ".tar.gz"))
        (sha256
-        (base32 "1lzb0jjmkg5ml1qfl0m00qqng4sxgfqwrbq10gpkp4b301k2ckv1"))))
+        (base32 "1j6bip76hhqvycapf7xy26y0b8g5zzx4gwkfsr7bf6m2h71a2zry"))))
     (build-system gnu-build-system)
     (arguments
      (list

gnu/packages/android.scm

@@ -1387,6 +1387,7 @@ mounted via FUSE.")
        (uri (git-reference
              (url "https://github.com/anestisb/android-simg2img")
              (commit version)))
+       (file-name (git-file-name name version))
        (sha256
         (base32
          "0drwvqxbhajka580j93z8ldckhjlpr0i84nh20krdpxcp54xvldh"))))

gnu/packages/apl.scm

@@ -30,20 +30,26 @@
   #:use-module (guix packages)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system trivial)
+  #:use-module (gnu packages algebra)
+  #:use-module (gnu packages base)
   #:use-module (gnu packages bash)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages gettext)
+  #:use-module (gnu packages gtk)
+  #:use-module (gnu packages image)
   #:use-module (gnu packages java)
   #:use-module (gnu packages maths)
   #:use-module (gnu packages pcre)
+  #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages readline)
-  #:use-module (gnu packages sqlite))
+  #:use-module (gnu packages sqlite)
+  #:use-module (gnu packages xorg))
 
 (define-public apl
-  (let ((revision 1550))
+  (let ((revision 1977))
     (package
       (name "apl")
-      (version (string-append "1.8-r" (number->string revision)))
+      (version (string-append "2.0.1-r" (number->string revision)))
       (source
        (origin
          (method svn-fetch)
@@ -52,12 +58,18 @@
                (revision revision)))
          (file-name (git-file-name name version))
          (sha256
-          (base32 "1bgc3a09f35zrqq2irhm1hspppnxjqas0fmcw14hkc7910br9ip3"))))
+          (base32 "1llm1hqpfd71jrhd4pizhmvvca5wr18v8zqfajwmvjjxcmzfkvv1"))))
       (build-system gnu-build-system)
       (home-page "https://www.gnu.org/software/apl/")
+      (native-inputs (list gettext-minimal which pkg-config))
       (inputs
        (list gettext-minimal
+             libxcb
+             fftw
              openblas
+             gsl
+             libpng
+             gtk+
              pcre2
              readline
              sqlite))
@@ -69,15 +81,11 @@
              #~(modify-phases %standard-phases
                  (add-before 'configure 'fix-configure
                    (lambda _
-                     (substitute* "buildtag.sh"
-                       ;; Don't exit on failed SVN-related calls.
-                       (("^ +return 0\n") "")
-                       ;; Manually set the SVN revision, since the directory is
-                       ;; unversioned and we know it anyway.
-                       (("^SVNINFO=.*")
-                        (string-append "SVNINFO=" #$(number->string revision) "\n"))
-                       ;; Requires running ‘svn info’ on a versioned directory.
-                       (("\\\\\"\\$ARCHIVE_SVNINFO\\\\\"") "\\\"\\\"")))))))
+                     (substitute* "configure"
+                       ;; Manually set the SVN revision, since the directory
+                       ;; is unversioned and we know it anyway.
+                       (("\\$apl_ARCHIVE_SVNINFO")
+                        #$(number->string revision))))))))
       (synopsis "APL interpreter")
       (description
        "GNU APL is a free interpreter for the programming language APL.  It is

gnu/packages/appimage.scm

@@ -19,9 +19,11 @@
 (define-module (gnu packages appimage)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (gnu packages base)
+  #:use-module (gnu packages c)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages file-systems)
   #:use-module (gnu packages linux)
+  #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages)
   #:use-module (guix build-system gnu)
   #:use-module (guix gexp)
@@ -30,9 +32,9 @@
   #:use-module (guix utils))
 
 (define-public appimage-type2-runtime
-  (let ((revision "0")
+  (let ((revision "1")
         ;; No releases, just the latest commit.
-        (commit "47b665594856b4e8928f8932adcf6d13061d8c30"))
+        (commit "caf24f9f712084686bfc24a70b75e50df0aefb9c"))
     (package
       (name "appimage-type2-runtime")
       (version (git-version "continuous" revision commit))
@@ -44,16 +46,16 @@
                 (commit commit)))
          (file-name (git-file-name name version))
          (sha256
-          (base32 "0954crhlbapxis96g1s0vfpf78ybr64zvjalak387ksxj560g44x"))))
+          (base32 "17z0byws3dp375wcyq5xwy5npqy7hslqw21n677dp38z4f940nzv"))))
       (build-system gnu-build-system)
       (arguments
        (list
         #:tests? #f                     ; No tests
         #:make-flags
-        #~(list "-Csrc/runtime" "runtime-fuse3"
+        #~(list "-Csrc/runtime" "runtime"
                 (string-append "CC=" #$(cc-for-target))
                 (string-append
-                 "CFLAGS=" "-I" #$(this-package-input "fuse") "/include/fuse/"
+                 "CFLAGS=" "-I" #$(this-package-input "fuse") "/include/fuse3/"
                  " -DGIT_COMMIT='\"" "guix-" #$version "\"'"
                  " -D_FILE_OFFSET_BITS=64"
                  " -static"
@@ -64,17 +66,22 @@
           (ice-9 binary-ports))
         #:phases
         #~(modify-phases %standard-phases
+            (add-after 'unpack 'use-pkgconfig-flags
+              (lambda _
+                (substitute* "src/runtime/Makefile"
+                  (("-lmimalloc")
+                   "$(pkg-config --cflags mimalloc)"))))
             (delete 'configure)
             (replace 'install
               (lambda _
-                (install-file "src/runtime/runtime-fuse3"
+                (install-file "src/runtime/runtime"
                               (string-append #$output "/bin"))))
             ;; Must be after all elf reliant phases.  Used to identify the
             ;; executable as an AppImage as per the specification.
             (add-after 'make-dynamic-linker-cache 'set-magic-bytes
               (lambda _
                 (let ((port (open (string-append #$output
-                                                 "/bin/runtime-fuse3")
+                                                 "/bin/runtime")
                                   (logior O_WRONLY))))
                   (seek port 8 SEEK_SET)
                   (put-bytevector port #vu8(#x41 #x49 #x02))
@@ -84,9 +91,12 @@
               (this-package-input "fuse")
               (gexp-input (this-package-input "zstd") "static")
               (gexp-input (this-package-input "zlib") "static"))))
+      (native-inputs (list pkg-config))
       ;; Only needed at build time.
-      (inputs (list squashfuse-for-appimage
-                    fuse-for-appimage
+      (inputs (list `(,fuse "out")
+                    `(,fuse "static")
+                    mimalloc
+                    squashfuse-for-appimage
                     `(,zstd "static")
                     `(,zlib "static")))
       (synopsis "Runtime for executing AppImages")

gnu/packages/apr.scm

@@ -34,14 +34,14 @@
 (define-public apr
   (package
     (name "apr")
-    (version "1.7.4")
+    (version "1.7.6")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://apache/apr/apr-"
                                  version ".tar.bz2"))
              (sha256
               (base32
-               "0xsmqgjiyw3s6va5dm86djnjzg9r0qc1zsldwz4sd8pkhglqsr7w"))
+               "0cpbbmng9ir8rjl9nxwljkzmrkpk4b1nsj8vg4ssfpapsa90s0s9"))
              (patches
               (search-patches "apr-skip-getservbyname-test.patch"))
              (patch-flags '("-p0"))))

gnu/packages/audio.scm

@@ -42,7 +42,7 @@
 ;;; Copyright © 2022 Andy Tai <atai@atai.org>
 ;;; Copyright © 2023 Sergiu Ivanov <sivanov@colimite.fr>
 ;;; Copyright © 2023 David Thompson <dthompson2@worcester.edu>
-;;; Copyright © 2023 Sharlatan Hellseher <sharlatanus@gmail.com>
+;;; Copyright © 2023, 2025-2026 Sharlatan Hellseher <sharlatanus@gmail.com>
 ;;; Copyright © 2023 Gabriel Wicki <gabriel@erlikon.ch>
 ;;; Copyright © 2023 Zheng Junjie <873216071@qq.com>
 ;;; Copyright © 2023 Parnikkapore <poomklao@yahoo.com>
@@ -2316,13 +2316,13 @@ object library.")
                 (file-name (git-file-name name version))
                 (sha256
                  (base32
-                  "1jds2l3cb96b02jxd7lmrjjl9s7mylnrvg6fpw0j8c141bk8vyg3"))))
+                  "1jds2l3cb96b02jxd7lmrjjl9s7mylnrvg6fpw0j8c141bk8vyg3"))
+                (patches
+                 (search-patches "tao-synth-include-string-you-use.patch"))))
       (build-system cmake-build-system)
       (arguments (list #:tests? #false))  ;there are no tests
       (inputs
        (list glfw freeglut))
-      (native-inputs
-       (list gcc-7))
       (home-page "https://github.com/lucasw/tao_synth")
       (synopsis "Sound synthesis with physical models")
       (description "Tao is a software package for sound synthesis using physical
@@ -6358,6 +6358,59 @@ It is currently fairly complete for PCM devices, and has some support for
 mixers.")
     (license license:psfl)))
 
+(define-public python-pyo
+  (package
+    (name "python-pyo")
+    (version "1.0.6")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/belangeo/pyo")
+              (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1igz75kv94dav28rzz19gckgfgdli05q5ghadlvm03ia7xd9l5zm"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+     ;; TODO: collecting ... Fatal Python error: Segmentation fault
+      #:tests? #f
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'sanity-check 'set-HOME
+            (lambda _
+              (setenv "HOME" "/tmp"))))))
+    (native-inputs
+     (list python-pytest
+           python-setuptools))
+    (inputs
+     (list liblo
+           libsndfile
+           portaudio
+           portmidi))
+    (propagated-inputs
+     (list python-wxpython))
+    (home-page "https://github.com/belangeo/pyo")
+    (synopsis "Python module to build digital signal processing program")
+    (description
+     "pyo is a Python module containing classes for a wide variety of audio
+signal processing types.
+
+With pyo, user will be able to include signal processing chains directly in
+Python scripts or projects, and to manipulate them in real time through the
+interpreter.  Tools in pyo module offer primitives, like mathematical
+operations on audio signal, basic signal processing (filters, delays,
+synthesis generators, etc.), but also complex algorithms to create sound
+granulation and others creative audio manipulations.
+
+pyo supports OSC protocol (Open Sound Control), to ease communications between
+softwares, and MIDI protocol, for generating sound events and controlling
+process parameters.  pyo allows creation of sophisticated signal processing
+chains with all the benefits of a mature, and widely used, general programming
+language.")
+    (license license:lgpl3+)))
+
 (define-public ldacbt
   (package
     (name "ldacbt")
@@ -7990,6 +8043,7 @@ Home Page}.")
              (commit version)
              ;; For test files.
              (recursive? #true)))
+       (file-name (git-file-name name version))
        (sha256
         (base32 "065x43hx670rjrclxi4hiqxscllb16v9s7myjvg7rd5pd3y0k7sg"))))
     (build-system pyproject-build-system)
@@ -8120,7 +8174,7 @@ and DSD streams.")
 (define-public qpwgraph
   (package
     (name "qpwgraph")
-    (version "0.9.9")
+    (version "1.0.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -8129,7 +8183,7 @@ and DSD streams.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "03001pvcbvr206k00751232gm50x1icf086z8c5hiakl2ym79gwl"))))
+                "0l3fflfpwkqy4iif8ifzzr3yy39ahzqdixx5g3rhj3zzbaysj73h"))))
     (build-system cmake-build-system)
     (arguments
      (list #:tests? #f))                ; no tests

gnu/packages/backup.scm

@@ -547,7 +547,7 @@ remain fully idle, saving power and producing less noise.")
          "0miklk4bqblpyzh1bni4x6lqn88fa8fjn15x1k1n8bxkx60nlymd"))))
     (build-system gnu-build-system)
     (inputs
-     (list librsync-0.9))
+     (list librsync))
     (arguments
      `(#:make-flags `("CFLAGS=-fcommon"
                       ,(string-append "PREFIX=" (assoc-ref %outputs "out"))

gnu/packages/bioconductor.scm

@@ -3436,14 +3436,14 @@ the @code{HorvathMethylChip40} (Mammal40) array.")
 (define-public r-systempiperdata
   (package
     (name "r-systempiperdata")
-    (version "2.14.5")
+    (version "2.14.6")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "systemPipeRdata" version
                               'experiment))
        (sha256
-        (base32 "1yrq1vyc0pmp3iv621cvdsavlarcca3z4bbxfzbg0ny3fyqp67pb"))))
+        (base32 "1j7h40hcm0gyahmlilvlb83ddmwrarqn319qwpnrgwcji8fm92jd"))))
     (properties `((upstream-name . "systemPipeRdata")))
     (build-system r-build-system)
     (propagated-inputs (list r-biocgenerics r-biostrings r-jsonlite r-remotes))
@@ -4552,15 +4552,9 @@ these biases and construct statistically consistent estimators.")
     (build-system r-build-system)
     (arguments
      (list
-      #:phases
-      '(modify-phases %standard-phases
-         (add-after 'unpack 'skip-bad-tests
-           (lambda _
-             ;; This test needs Internet access.
-             (with-directory-excursion "tests/testthat"
-               (substitute* "test-examples.R"
-                 ((".*find_taxonomy\\(\\) is working.*" m)
-                  (string-append m "skip('guix')\n")))))))))
+      #:skipped-tests
+      ;; This test needs Internet access.
+      '(("test-examples.R" ".*find_taxonomy\\(\\) is working.*"))))
     (propagated-inputs
      (list r-ape
            r-assertthat
@@ -4611,13 +4605,13 @@ to understand their data better and discover new insights.")
 (define-public r-anndatar
   (package
     (name "r-anndatar")
-    (version "1.0.1")
+    (version "1.0.2")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "anndataR" version))
        (sha256
-        (base32 "1vi9aqgdjy0nlbsk7628sz12jsxd9bfb79yxhh0ngijpxj9sxd4p"))))
+        (base32 "1gn1yyfs08a77zrl4cidahxim3kgcvpbsrgfxxnhhrka57xcylld"))))
     (properties `((upstream-name . "anndataR")))
     (build-system r-build-system)
     (arguments
@@ -4670,14 +4664,13 @@ directly access various slots (e.g. X, obs, var), or convert the data into
     (build-system r-build-system)
     (arguments
      (list
+      #:test-directory "inst/unitTests"
+      ;; These tests require internet access.
+      #:skipped-tests
+      '("test_recipe.R"
+        "test_webAccessFunctions.R")
       #:phases
       '(modify-phases %standard-phases
-         (add-after 'unpack 'delete-bad-tests
-           (lambda _
-             ;; These tests require internet access.
-             (for-each delete-file
-                       '("inst/unitTests/test_recipe.R"
-                         "inst/unitTests/test_webAccessFunctions.R"))))
          (add-before 'install 'set-home
            (lambda _ (setenv "HOME" "/tmp"))))))
     (propagated-inputs
@@ -5244,13 +5237,13 @@ structures: @code{ExpressionSet}, @code{AffyBatch}, @code{NChannelSet}.")
 (define-public r-arrayqualitymetrics
   (package
     (name "r-arrayqualitymetrics")
-    (version "3.64.0")
+    (version "3.66.0")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "arrayQualityMetrics" version))
               (sha256
                (base32
-                "1kz2d40wx2ksy9dz1z3wylcj7y7ad9z8xphsnz39j02m4g5mbvlp"))))
+                "0y9k81vwqq74zfdrc2hvx7mg0l7572hvrsby00m20z034j7f9pmi"))))
     (properties
      '((upstream-name . "arrayQualityMetrics")
        ;; We don't need these.
@@ -5272,7 +5265,7 @@ structures: @code{ExpressionSet}, @code{AffyBatch}, @code{NChannelSet}.")
                              r-svglite
                              r-vsn
                              r-xml))
-    (native-inputs (list r-knitr))
+    (native-inputs (list r-biocstyle r-knitr))
     (home-page "https://bioconductor.org/packages/arrayQualityMetrics")
     (synopsis "Quality metrics report for microarray data sets")
     (description
@@ -6110,10 +6103,8 @@ retrieval analyses, or similar technologies.")
     (build-system r-build-system)
     (arguments
      (list
-      #:phases
-      '(modify-phases %standard-phases
-         (add-after 'unpack 'disable-bad-tests
-           (lambda _ (delete-file "tests/testthat/test-download.R"))))))
+      ;; This requires internet access.
+      #:skipped-tests '("test-download.R")))
     (propagated-inputs (list cmake r-dir-expiry))
     (native-inputs (list r-knitr r-testthat))
     (home-page "https://github.com/LTLA/biocmake")
@@ -6421,17 +6412,6 @@ objects.")
         (base32 "189akh4lpbp0dzgflb3nb3vi94bhmsj7qkcl597dnnzxqz00hsb2"))))
     (properties `((upstream-name . "CoreGx")))
     (build-system r-build-system)
-    (arguments
-     (list
-      #:phases
-      '(modify-phases %standard-phases
-         (add-after 'unpack 'disable-bad-tests
-           (lambda _
-             ;; It is unclear why 3 tests fail.
-             (with-directory-excursion "tests/testthat"
-               (substitute* "test-LongTable-utils.R"
-                 ((".*doesn't miss assay observations.*" m)
-                  (string-append m "skip('guix')\n")))))))))
     (propagated-inputs
      (list r-bench
            r-biobase
@@ -7900,13 +7880,13 @@ Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.")
 (define-public r-isva
   (package
     (name "r-isva")
-    (version "1.9")
+    (version "1.10")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "isva" version))
               (sha256
                (base32
-                "05qx9q0kg4ma23v4abhihw0vz017nq6hv2jzsiqx4d20ngh1dl4z"))))
+                "1im1bwbf6l88m4bwwwr0z2x8bvw927s3fqbwc06s5240wc8syjpl"))))
     (properties `((upstream-name . "isva")))
     (build-system r-build-system)
     (propagated-inputs (list r-fastica r-jade r-qvalue))
@@ -8673,13 +8653,13 @@ on Bioconductor or which replace R functions.")
 (define-public r-biomart
   (package
     (name "r-biomart")
-    (version "2.66.1")
+    (version "2.66.2")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "biomaRt" version))
               (sha256
                (base32
-                "1cmzay4z9s183dc001rxfa81ql67la9y8m0p0wsn2iwzxzx94n8g"))))
+                "1awsfklcs35vrmjkc12bk5ys9w7ib0799i3d0k138y44a0837pph"))))
     (properties
      `((upstream-name . "biomaRt")))
     (build-system r-build-system)
@@ -10337,13 +10317,13 @@ Enrichment Analysis} (GSEA).")
 (define-public r-gsva
   (package
     (name "r-gsva")
-    (version "2.4.6")
+    (version "2.4.8")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "GSVA" version))
               (sha256
                (base32
-                "08i2s5zlm75mr7zl357cic2zxcy7aqqfv67xb0w67n48cw016ri6"))))
+                "0p9awi85dbmmyplhdfz0in4nhaavb58gpf48kqyp30rcc3v5a8h0"))))
     (properties `((upstream-name . "GSVA")))
     (build-system r-build-system)
     (propagated-inputs (list r-biobase
@@ -10738,6 +10718,54 @@ nucleotide sequence analysis.  The package is primarily useful to developers
 of other R packages who wish to make use of HTSlib.")
     (license license:lgpl2.0+)))
 
+(define-public r-rliger
+  (package
+    (name "r-rliger")
+    (version "2.2.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/welch-lab/liger")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1w849km9b347m56qwr5lr6ymdk7wv22hr224riscm0zrnx402yb3"))))
+    (properties `((upstream-name . "rliger")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-cli
+                             r-delayedarray
+                             r-dplyr
+                             r-ggplot2
+                             r-hdf5array
+                             r-hdf5r
+                             r-leidenalg
+                             r-lifecycle
+                             r-magrittr
+                             r-matrix
+                             r-patchwork
+                             r-rann
+                             r-rcpp
+                             r-rcpparmadillo
+                             r-rcppplanc
+                             r-rcppprogress
+                             r-rlang
+                             r-s4vectors
+                             r-scales
+                             r-uwot))
+    (native-inputs
+     (list r-circlize r-complexheatmap r-knitr r-testthat r-viridis))
+    (home-page "https://github.com/welch-lab/liger")
+    (synopsis "Linked inference of genomic experimental relationships")
+    (description
+     "LIGER is a package for integrating and analyzing multiple single-cell
+datasets. It relies on integrative non-negative matrix factorization to
+identify shared and dataset-specific factors.")
+    (license license:gpl3)))
+
+(define-deprecated-package r-liger
+  r-rliger)
+
 (define-public r-rnbeads
   (package
     (name "r-rnbeads")
@@ -11117,13 +11145,13 @@ different technologies, including microarrays, RNA-seq, and quantitative PCR.")
 (define-public r-maaslin2
   (package
     (name "r-maaslin2")
-    (version "1.22.0")
+    (version "1.24.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "Maaslin2" version))
        (sha256
-        (base32 "10hdjhi1ykk513hzvs0bi6avzghqmkqns8knhz3ycv7bj3ynp70x"))))
+        (base32 "0z8vfx6db6xfvqdhg6n8jx3fmgwvq22facsacq6ym867kw2jafiz"))))
     (properties `((upstream-name . "Maaslin2")))
     (build-system r-build-system)
     (propagated-inputs
@@ -11311,17 +11339,6 @@ high distances can be flagged as potentially low-quality.")
        ;; Avoid dependency cycle.
        (updater-ignored-native-inputs . ("r-spectra"))))
     (build-system r-build-system)
-    (arguments
-     (list
-      #:phases
-      '(modify-phases %standard-phases
-         ;; This test uses a deprecated procedure that has since been removed
-         ;; from testthat.
-         (add-after 'unpack 'testthat-compatibility
-           (lambda _
-             (substitute* "tests/testthat/test_zzz.R"
-               ((".*.onLoad works.*" m)
-                (string-append m "skip('guix')\n"))))))))
     (propagated-inputs (list r-biocparallel r-mscoreutils))
     (native-inputs (list r-callr r-knitr r-microbenchmark r-robustbase
                          r-testthat))
@@ -11528,13 +11545,13 @@ time-series data (including a graphical user interface).")
 (define-public r-mmuphin
   (package
     (name "r-mmuphin")
-    (version "1.22.0")
+    (version "1.24.0")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "MMUPHin" version))
        (sha256
-        (base32 "0d8i9b6pjwz409jd46fm1n9h21hzg8zgzpvchywpyc1k896fvz4l"))
+        (base32 "1zdk9ffa996w4acnhbs7grbji5s3plwhcl6m21yajrlck2i9y3cw"))
        ;; Delete generated files.
        (snippet
         '(for-each delete-file
@@ -14298,13 +14315,13 @@ level.")
 (define-public r-tcgautils
   (package
     (name "r-tcgautils")
-    (version "1.30.2")
+    (version "1.30.3")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "TCGAutils" version))
               (sha256
                (base32
-                "1zwzx7mfp4s0v1rdjsyxj4l9w360g4qm3am8yf5lsd0biciqqh93"))))
+                "1nppp70675y3ds76jf61rhfis2lgkxqjhz48b367qa55g3q2ah61"))))
     (properties `((upstream-name . "TCGAutils")))
     (build-system r-build-system)
     (arguments
@@ -15024,14 +15041,14 @@ unmodeled, or latent sources of noise.")
 (define-public r-systempiper
   (package
     (name "r-systempiper")
-    (version "2.16.3")
+    (version "2.16.4")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "systemPipeR" version))
        (sha256
         (base32
-         "0maixi0hwqzkpiq60hf60x4q3gv3hkvmrqh3ygv0fk63g1k9f6cj"))))
+         "1zrk6ky58f30wvaxph5dc2wr418qfpwc7d8pkxpl5dhb5g7vgn8r"))))
     (properties `((upstream-name . "systemPipeR")))
     (build-system r-build-system)
     ;; Tests fail because genWorkenvir fails to set up the environment.
@@ -15398,13 +15415,13 @@ molecular functions, respectively, and produces intuitive graphical outputs.")
 (define-public r-xllim
   (package
     (name "r-xllim")
-    (version "2.3")
+    (version "2.3.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "xLLiM" version))
        (sha256
-        (base32 "08v6acn6vpn8asn61ldqdryjz0xk5zyd2v63aqrc5xximpqwrp7d"))))
+        (base32 "1h2z6a3j3yi7rj5lyk7gb1iyp2vf516fgmk7wr333gfkvk522n2r"))))
     (properties `((upstream-name . "xLLiM")))
     (build-system r-build-system)
     (propagated-inputs (list r-abind
@@ -16304,14 +16321,14 @@ signals directly in the Bruker format.")
 (define-public r-codedepends
   (package
     (name "r-codedepends")
-    (version "0.6.6")
+    (version "0.6.7")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "CodeDepends" version))
        (sha256
         (base32
-         "0msq5ksjqp2pjzl6f1vizw53gdf5lz520bpdr5dbjwz5mc1mp0bz"))))
+         "02sj40qxq5vywgqay9q9vpv3s6j3jjr46kc8q3v1yw2vbsmlvrz0"))))
     (properties `((upstream-name . "CodeDepends")))
     (build-system r-build-system)
     (propagated-inputs
@@ -17382,14 +17399,14 @@ data.")
 (define-public r-ggtree
   (package
     (name "r-ggtree")
-    (version "4.0.4")
+    (version "4.0.5")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "ggtree" version))
        (sha256
         (base32
-         "1qi5nispv0cirfayijybnn1nr8l6sb2adnic3y37qm3yv91w6s6z"))))
+         "0w9hqc3m35mrdqy5iwcm201pzpbl8jw6rd3wyzwp6f53wbbm2lbh"))))
     (properties `((upstream-name . "ggtree")))
     (build-system r-build-system)
     (propagated-inputs
@@ -18703,13 +18720,13 @@ standardization of the analyses and the development of best practices.")
 (define-public r-microbiomestat
   (package
     (name "r-microbiomestat")
-    (version "1.3")
+    (version "1.4")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "MicrobiomeStat" version))
               (sha256
                (base32
-                "02xg8l4d0z5wrdrm5dj5a0q51vsbhf3f6z2lk8294c4d85s09dhl"))))
+                "0in28lzds3sv1xa25vs8q5mmm1ax78s2axhq7mi23njqip5xmsr1"))))
     (properties
      '((upstream-name . "MicrobiomeStat")
        (updater-extra-inputs . ("nlopt"))
@@ -18717,23 +18734,21 @@ standardization of the analyses and the development of best practices.")
     (build-system r-build-system)
     (inputs (list nlopt))
     (native-inputs (list pkg-config))
-    (propagated-inputs (list r-bbmisc
+    (propagated-inputs (list r-bbotk
                              r-dplyr
                              r-foreach
                              r-ggplot2
                              r-ggrepel
-                             r-lhs
                              r-lmertest
                              r-mass
                              r-matrix
                              r-matrixstats
-                             r-mlr
-                             r-mlrmbo
+                             r-mlr3
+                             r-mlr3mbo
                              r-modeest
-                             r-paramhelpers
+                             r-paradox
                              r-rcpp
                              r-rcpparmadillo
-                             r-smoof
                              r-statmod))
     (home-page "https://cran.r-project.org/package=MicrobiomeStat")
     (synopsis "Statistical methods for microbiome compositional data")
@@ -19637,14 +19652,14 @@ correspondence between different data sources.")
 (define-public r-enrichplot
   (package
     (name "r-enrichplot")
-    (version "1.30.4")
+    (version "1.30.5")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "enrichplot" version))
        (sha256
         (base32
-         "080q91ll8rvqf93hcmxc7kjbmmihyh0vrpxck2pqrwglbqxm4xll"))))
+         "12c6xwp29mmalvxp3asliv2hlha5vv8l37prmmcgpdi4nghfic3b"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-aplot
@@ -22889,14 +22904,14 @@ expression space.")
 (define-public r-cicero
   (package
     (name "r-cicero")
-    (version "1.28.0")
+    (version "1.28.3")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "cicero" version))
        (sha256
         (base32
-         "1ibxynw77a8mqv9av7z828wcazjpm4sfp83hd412f2rmgkls895x"))))
+         "016wpficnbricf4f7sgq8j53cl178f1332fh9zvlx7q560489zf1"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-assertthat
@@ -23528,14 +23543,14 @@ populations, splice site strength, conservation, etc.")
 (define-public r-variancepartition
   (package
     (name "r-variancepartition")
-    (version "1.40.1")
+    (version "1.40.2")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "variancePartition" version))
        (sha256
         (base32
-         "1xqy4jl8im7i4kd4iwn8hvhy172fzsadyn90kprihmvccmpd5cr3"))))
+         "0k2rcgg4ll06b9j7999d4l60wpmi3vnjaqiy5ay8ppd1z0m38ygf"))))
     (properties
      '((upstream-name . "variancePartition")
        (updater-extra-native-inputs . ("r-rfast"))))
@@ -23876,30 +23891,26 @@ rate} (FDR).")
 (define-public r-activedriverwgs
   (package
     (name "r-activedriverwgs")
-    (version "1.2.0")
+    (version "1.2.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ActiveDriverWGS" version))
        (sha256
         (base32
-         "0xnplgwxd197a4d422bsxg753q158i12ils16awd1cw30wafdxkk"))))
+         "1v6lnzbaksqpc33q3bp4mwij6rrfbqhi5wk1qx32h2wr2hr4208y"))))
     (properties
      `((upstream-name . "ActiveDriverWGS")))
     (build-system r-build-system)
     (propagated-inputs
      (list r-biostrings
            r-bsgenome
-           r-bsgenome-hsapiens-ucsc-hg19
-           r-bsgenome-hsapiens-ucsc-hg38
-           r-bsgenome-mmusculus-ucsc-mm9
-           r-bsgenome-mmusculus-ucsc-mm10
            r-genomeinfodb
            r-genomicranges
            r-iranges
            r-s4vectors))
     (native-inputs
-     (list r-knitr r-testthat))
+     (list r-bsgenome-hsapiens-ucsc-hg19 r-knitr r-testthat))
     (home-page "https://cran.r-project.org/web/packages/ActiveDriverWGS/")
     (synopsis "Driver discovery tool for cancer whole genomes")
     (description
@@ -24759,13 +24770,13 @@ functionality.")
 (define-public r-biocviews
   (package
     (name "r-biocviews")
-    (version "1.78.0")
+    (version "1.78.1")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "biocViews" version))
               (sha256
                (base32
-                "1dfsfj4dm9wnh4qr1sqdrwzccl3pgw58j17vr3i1bvxkrq31p1ws"))))
+                "1qw3xwsffdqfwpmwrpzg8rnjwv9l45lkjz8bf5272hkhgjc7b1a8"))))
     (properties
      `((upstream-name . "biocViews")))
     (build-system r-build-system)
@@ -24878,14 +24889,14 @@ db and resource files to AWS S3 buckets.")
 (define-public r-multiassayexperiment
   (package
     (name "r-multiassayexperiment")
-    (version "1.36.1")
+    (version "1.36.2")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "MultiAssayExperiment" version))
        (sha256
         (base32
-         "09jwnwiq4vx7cmzq5va3rh7npjyhi1p5p344c4n0h9nr55mxzjiw"))))
+         "0bhr51c58vdfvly0bh3hgr397qkq45yw8221rpr38cah7dbzvrba"))))
     (properties
      '((upstream-name . "MultiAssayExperiment")
        (updater-extra-native-inputs
@@ -25954,13 +25965,13 @@ provided for direct creation of an in-memory tatami matrix from a HDF5 file.")
 (define-public r-beadarray
   (package
     (name "r-beadarray")
-    (version "2.58.0")
+    (version "2.60.1")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "beadarray" version))
               (sha256
                (base32
-                "0m9hmy4xn7q2v4ra95b9h08d0qh5qmjgqmg96vabyv46gn5i7qp4"))))
+                "1bcirbg10ai6jpa8a5ppq4450r5h2bwizb98qn0z0hmm1mm4ww9r"))))
     (properties `((upstream-name . "beadarray")))
     (build-system r-build-system)
     (propagated-inputs (list r-annotationdbi
@@ -26390,13 +26401,13 @@ of other packages.")
 (define-public r-scater
   (package
     (name "r-scater")
-    (version "1.38.0")
+    (version "1.38.1")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "scater" version))
               (sha256
                (base32
-                "1qwygk8fg8nharrkmjs65fcl3lsdi232f2383s5j8vm1qil5gghd"))))
+                "1p8dzjphrcqai1f8wh56jfv377dqzdfnx2sl9sn73axbsr41swa7"))))
     (build-system r-build-system)
     (properties
      '((updater-extra-native-inputs
@@ -26501,13 +26512,13 @@ variable and significantly correlated genes.")
 (define-public r-sparsearray
   (package
     (name "r-sparsearray")
-    (version "1.10.8")
+    (version "1.10.10")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "SparseArray" version))
        (sha256
-        (base32 "1bjxljwfrv787ikp61xl29wx3k6624qz75gl1kzfif62vys7vgf0"))))
+        (base32 "19c1dfa5wizq7k53a43i5dwwaqs44prclxbf1k0i3awx5wz6qlbw"))))
     (properties `((upstream-name . "SparseArray")))
     (build-system r-build-system)
     (propagated-inputs (list r-biocgenerics
@@ -27161,14 +27172,14 @@ with your data.")
 (define-public r-gwascat
   (package
     (name "r-gwascat")
-    (version "2.42.0")
+    (version "2.42.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "gwascat" version))
        (sha256
         (base32
-         "1v5z4fmwgs3swvpa09y986sracz0nsggq8s9hp1nmwb9a9grw8px"))))
+         "0djrd63nsqpy46acblg5k8pq6ldqccr35r6h0sf4xridpkqm78b1"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-annotationdbi
@@ -27183,7 +27194,6 @@ with your data.")
            r-readr
            r-s4vectors
            r-seqinfo
-           r-snpstats
            r-tibble
            r-variantannotation))
     (native-inputs
@@ -27644,16 +27654,6 @@ visualizations for publication-quality multi-panel figures.")
          "1c7vy10ga3cswsqwxljbgqlsjg0d2lx9srfknbjy4fkbyrjci15k"))))
     (properties `((upstream-name . "ballgown")))
     (build-system r-build-system)
-    (arguments
-     (list
-      #:phases
-      '(modify-phases %standard-phases
-         ;; These deprecated procedures have been removed in testthat.
-         (add-after 'unpack 'testthat-compatibility
-           (lambda _
-             (substitute* "tests/testthat/test-annotation.R"
-               (("is_true\\(\\)") "expect_true")
-               (("is_false\\(\\)") "expect_false")))))))
     (propagated-inputs
      (list r-biobase
            r-genomicranges
@@ -28409,28 +28409,18 @@ separate published packages.")
 (define-public r-biomformat
   (package
     (name "r-biomformat")
-    (version "1.38.0")
+    (version "1.38.3")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "biomformat" version))
        (sha256
         (base32
-         "1ydcgifdrgg48y7qxg0gw30h332y3yk3k3n17fajkv58mlvyx1yc"))))
+         "0b0w0mfx448ph8fla3nb4i50mvpnv498kxip7rnh14xwas9rhdd7"))))
     (properties `((upstream-name . "biomformat")))
     (build-system r-build-system)
-    (arguments
-     (list
-      #:phases
-      '(modify-phases %standard-phases
-         ;; These deprecated procedures have been removed in testthat.
-         (add-after 'unpack 'testthat-compatibility
-           (lambda _
-             (substitute* "tests/testthat/test-IO.R"
-               (("is_true\\(\\)") "expect_true")
-               (("is_false\\(\\)") "expect_false")))))))
     (propagated-inputs
-     (list r-jsonlite r-matrix r-plyr r-rhdf5))
+     (list r-jsonlite r-matrix r-rhdf5))
     (native-inputs (list r-knitr r-testthat))
     (home-page "https://github.com/joey711/biomformat/")
     (synopsis "Interface package for the BIOM file format")
@@ -29188,25 +29178,15 @@ reproducibility.")
 (define-public r-phyloseq
   (package
     (name "r-phyloseq")
-    (version "1.54.1")
+    (version "1.54.2")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "phyloseq" version))
        (sha256
-        (base32 "1zivxag6b2bjh32k1mpn7hlvalap97rp90x3cbfynqrk6933f4bq"))))
+        (base32 "106zwzzwzvb5x0lz9i68wshh2nsa2rf5rmkqjqsvr4smxq6hknlj"))))
     (properties `((upstream-name . "phyloseq")))
     (build-system r-build-system)
-    (arguments
-     (list
-      #:phases
-      '(modify-phases %standard-phases
-         ;; These deprecated procedures have been removed in testthat.
-         (add-after 'unpack 'testthat-compatibility
-           (lambda _
-             (substitute* (find-files "tests/testthat" "\\.R$")
-               (("is_true\\(\\)") "expect_true")
-               (("is_false\\(\\)") "expect_false")))))))
     (propagated-inputs
      (list r-ade4
            r-ape

gnu/packages/bioinformatics.scm

@@ -922,7 +922,10 @@ suite native in R.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "12h1di45fg06nhsliii7v0h1z567pkpis1xm4ar1qr8ns1n8iljw"))))
+        (base32 "12h1di45fg06nhsliii7v0h1z567pkpis1xm4ar1qr8ns1n8iljw"))
+       (modules '((guix build utils)))
+       (snippet
+        '(delete-file-recursively "r/src/vendor/highway"))))
     (properties `((upstream-name . "BPCells")))
     (build-system r-build-system)
     (arguments
@@ -930,7 +933,11 @@ suite native in R.")
       #:phases
       '(modify-phases %standard-phases
          (add-after 'unpack 'chdir
-           (lambda _ (chdir "r"))))))
+           (lambda _
+             (substitute* "r/configure"
+               (("tools/hwy-test.cpp" m)
+                (string-append m " $HWY_LIBS $HWY_CFLAGS")))
+             (chdir "r"))))))
     (propagated-inputs
      (list r-dplyr
            r-ggplot2
@@ -957,7 +964,7 @@ suite native in R.")
            r-igraph
            r-iranges
            r-matrixstats))
-    (inputs (list hdf5 zlib))
+    (inputs (list hdf5 google-highway zlib))
     (native-inputs (list pkg-config))
     (home-page "https://github.com/bnprks/BPCells")
     (synopsis "Single cell counts matrices to PCA")
@@ -4890,26 +4897,29 @@ relying on a complex dependency tree.")
 (define-public biosoup
   (package
     (name "biosoup")
-    (version "0.10.0")
+    (version "0.11.0")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
              (url "https://github.com/rvaser/biosoup")
-             ;; Corresponds to version 0.10.0
-             (commit "38181f09854ff42cbd9632200a2ec9fb37a4b7b6")))
+             (commit version)))
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "02hvyka703zagx0nvv2yx3dkc748zc8g6qbrpya7r8kfkcl7y8hw"))))
+         "0vn1hj3h152iwahnrzghqll34qaphchi07klb3j70vgc248micbz"))))
     (build-system cmake-build-system)
     (arguments
-     `(#:phases
-       (modify-phases %standard-phases
-         (replace 'check
-           (lambda* (#:key tests? #:allow-other-keys)
-             (when tests?
-               (invoke "./bin/biosoup_test")))))))
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'enable-testing
+            (lambda _
+              (substitute* "CMakeLists.txt"
+                (("target_link_libraries\\(biosoup_test")
+                 "enable_testing()
+  add_test(NAME biosoup-test COMMAND biosoup_test)
+  target_link_libraries(biosoup_test")))))))
     (native-inputs
      (list googletest))
     (home-page "https://github.com/rvaser/biosoup")
@@ -4921,26 +4931,29 @@ used for storage and logging in bioinformatics tools.")
 (define-public bioparser
   (package
     (name "bioparser")
-    (version "3.0.13")
+    (version "3.1.0")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
              (url "https://github.com/rvaser/bioparser")
-             ;; Corresponds to tag 3.0.13
-             (commit "13341e6e0855c6b358ffcea6dad216e1009e1287")))
+             (commit version)))
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "0c5p2dl8jb12ci9f427jzrmmm9cgvc1k4fxsn2ggkfsin6r1r82i"))))
+         "057zb3g8qyvbkbfzgkygrf0iphz3v4icm13pchxzrafiy7zkbmrq"))))
     (build-system cmake-build-system)
     (arguments
-     `(#:phases
-       (modify-phases %standard-phases
-         (replace 'check
-           (lambda* (#:key tests? #:allow-other-keys)
-             (when tests?
-               (invoke "./bin/bioparser_test")))))))
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'enable-testing
+            (lambda _
+              (substitute* "CMakeLists.txt"
+                (("target_link_libraries\\(bioparser_test")
+                 "enable_testing()
+  add_test(NAME bioparser-test COMMAND bioparser_test)
+  target_link_libraries(bioparser_test")))))))
     (inputs
      (list biosoup))
     (propagated-inputs
@@ -4954,113 +4967,6 @@ bioinformatics formats (FASTA/Q, MHAP/PAF/SAM), with support for zlib
 compressed files.")
     (license license:expat)))
 
-(define-public circtools
-  (package
-    (name "circtools")
-    (version "1.0.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/Kevinzjy/circtools")
-             ;; Corresponds to tag v1.0.0
-             (commit "79380de59013601021ca3b1352d6f64d2fb89646")
-             (recursive? #t)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32
-         "0wg1s927g32k25j967kfr8l30nmr4c0p4zvy5igvy7cs6chd60lh"))))
-    (build-system cargo-build-system)
-    (arguments
-     `(#:tests? #f
-       #:install-source? #f
-       #:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'make-writable
-           (lambda _
-             (for-each make-file-writable (find-files "."))))
-         (add-after 'unpack 'prepare-spoa-dependencies
-           (lambda* (#:key inputs #:allow-other-keys)
-             (substitute* "vendor/spoa/CMakeLists.txt"
-               (("find_package\\(bioparser 3.0.13 QUIET\\)")
-                "find_package(bioparser 3.0.13 CONFIG)")
-               (("find_package\\(biosoup 0.10.0 QUIET\\)")
-                "find_package(biosoup 0.10.0 CONFIG)")
-               (("GTest_FOUND") "TRUE")))))))
-    (inputs
-     (cons* bioparser biosoup (cargo-inputs 'circtools)))
-    (native-inputs
-     (list cmake-minimal pkg-config googletest))
-    (home-page "https://github.com/Kevinzjy/circtools")
-    (synopsis "Accelerating functions in CIRI toolkit")
-    (description "This package provides accelerated functions for the CIRI
-toolkit.  It also provides the @code{ccs} executable to scan for circular
-consensus sequences.")
-    (license license:expat)))
-
-(define-public ciri-long
-  (package
-    (name "ciri-long")
-    (version "1.0.2")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/bioinfo-biols/CIRI-long")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "10k88i1fcqchrrjv82rmylwvbwqfba0n51palhig9hsg71xs0dbi"))
-       ;; Delete bundled binary
-       (snippet '(delete-file "libs/ccs"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'relax-requirements
-            (lambda _
-              (substitute* "setup.py"
-                (("'argparse[^']*',")
-                 "") ;only for python2
-                (("==")
-                 ">=")
-                ;; This package changed names.
-                (("python-Levenshtein")
-                 "levenshtein"))))
-          (add-before 'build 'build-libssw
-            (lambda _
-              (with-directory-excursion "libs/striped_smith_waterman"
-                (invoke "make" "libssw.so"))))
-          (add-before 'build 'fix-reference-to-ccs
-            (lambda* (#:key inputs #:allow-other-keys)
-              (substitute* "CIRI_long/pipeline.py"
-                (("'ccs -i")
-                 (string-append "'"
-                                (assoc-ref inputs "circtools") "/bin/ccs"
-                                " -i")))
-              ;; yuck!
-              (substitute* "CIRI_long/main.py"
-                (("os.chmod\\(lib_path.*")
-                 "")))))))
-    (inputs (list circtools
-                  python-biopython
-                  python-bwapy
-                  python-levenshtein
-                  python-mappy
-                  python-numpy
-                  python-pandas
-                  python-pysam
-                  python-pyspoa
-                  python-scikit-learn
-                  python-scipy))
-    (native-inputs (list python-cython python-pynose python-setuptools))
-    (home-page "https://ciri-cookbook.readthedocs.io/")
-    (synopsis "Circular RNA identification for Nanopore sequencing")
-    (description "CIRI-long is a package for circular RNA identification using
-long-read sequencing data.")
-    (license license:expat)))
-
 (define-public python-circe
   (package
     (name "python-circe")
@@ -7168,14 +7074,16 @@ CWL descriptions.")
   (package
     (name "ravanan")
     (version "0.2.0")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append
-                    "https://github.com/arunisaac/ravanan/releases/download/v"
-                    version "/ravanan-" version ".tar.lz"))
-              (sha256
-               (base32
-                "00ayvxsgvma3231ja1759f5fr99a4nw3j23i8qz616wfxa54745s"))))
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/arunisaac/ravanan")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "1ap9h2d92wjvnn8914baqkx6xn8zdanxmpjfg81v3qx35pn938al"))))
     (arguments
      (list #:make-flags
            #~(list (string-append "prefix=" #$output)
@@ -7209,7 +7117,7 @@ CWL descriptions.")
     (inputs
      (list bash-minimal
            node
-           guile-3.0
+           (lookup-package-input guix "guile")
            guile-filesystem
            guile-gcrypt
            guile-json-4
@@ -7328,7 +7236,7 @@ genome- and pangenome-scale queries using a laptop.")
 (define-public delly
   (package
     (name "delly")
-    (version "0.8.3")
+    (version "1.7.3")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -7336,7 +7244,7 @@ genome- and pangenome-scale queries using a laptop.")
                     (commit (string-append "v" version))))
               (file-name (git-file-name name version))
               (sha256
-               (base32 "1ibnplgfzj96w8glkx17v7sld3pm402fr5ybmf3h0rlcryabxrqy"))
+               (base32 "1ri7m7iv3wakm7zdwqdzm5m71y0swad9n78dzrzr9gs3j7j5yxjs"))
               (modules '((guix build utils)))
               (snippet
                '(delete-file-recursively "src/htslib"))))
@@ -13208,28 +13116,22 @@ differently labelled data.")
 (define-public r-pando
   (package
     (name "r-pando")
-    (version "1.0.5")
+    (version "1.1.1")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
-             (url "https://github.com/quadbiolab/Pando")
-             (commit (string-append "v" version))))
+              (url "https://github.com/quadbio/Pando")
+              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "04kr1b28p5j7h48g32cldkg87xcmxnmd4kspygkfs7a4amihpi66"))))
+        (base32 "1zcsg3my1ka2wprvlx8p08cdz3dqphga54d5rp418zfhcyjy4fkp"))))
     (properties `((upstream-name . "Pando")))
     (build-system r-build-system)
     (arguments
      (list
       ;; The test file data/test_seurat.rds is not included.
-      #:tests? #false
-      #:phases
-      '(modify-phases %standard-phases
-         (add-after 'unpack 'loosen-requirements
-           (lambda _
-             (substitute* "DESCRIPTION"
-               ((" \\(==.*,") ",")))))))
+      #:tests? #false))
     (propagated-inputs
      (list r-bayestestr
            r-foreach

gnu/packages/build-tools.scm

@@ -26,6 +26,7 @@
 ;;; Copyright © 2025 Josep Bigorra <jjbigorra@gmail.com>
 ;;; Copyright © 2025 John Kehayias <john.kehayias@protonmail.com>
 ;;; Copyright © 2026 Nemin <bergengocia@protonmail.com>
+;;; Copyright © 2026 Nguyễn Gia Phong <cnx@loang.net>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -100,6 +101,7 @@
   #:use-module (gnu packages rpc)
   #:use-module (gnu packages serialization)
   #:use-module (gnu packages sqlite)
+  #:use-module (gnu packages tcl)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages unicode)
   #:use-module (gnu packages version-control)
@@ -139,6 +141,48 @@ Bourne shell script instead of m4.")
     (home-page "https://github.com/radareorg/acr")
     (license license:gpl2)))
 
+(define-public autosetup
+  (package
+    (name "autosetup")
+    (version "0.7.2")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/msteveb/autosetup")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256 (base32 "002b380073cpxlqziia2gvngywrb37b08p9k0zk9vlxn2p174hc6"))
+       (modules '((guix build utils)))
+       (snippet
+        #~(begin
+            (delete-file "jimsh0.c")
+            (substitute* "Makefile"
+              (("^.*tclsh8\\..*")       ;tests run with specific Tcl versions
+               ""))))))
+    (build-system gnu-build-system)
+    (arguments
+     (list #:test-target "test"
+           #:phases
+           #~(modify-phases %standard-phases
+               (delete 'configure)
+               (delete 'build)
+               (replace 'install
+                 (lambda* (#:key inputs #:allow-other-keys)
+                   (substitute* "sys-find-tclsh"
+                     (("jimsh tclsh")
+                      (search-input-file inputs "bin/tclsh")))
+                   (invoke "tclsh" "autosetup"
+                           (string-append "--sysinstall=" #$output)))))))
+    (inputs (list tcl))
+    (home-page "https://msteveb.github.io/autosetup/")
+    (synopsis "Build environment auto-configurator")
+    (description
+     "@command{autosetup} is a tool, similar to @command{autoconf},
+to configure a build system for the appropriate environment,
+according to the system capabilities and the user-selected options.")
+    (license license:bsd-2)))
+
 (define-public bam
   (package
     (name "bam")

gnu/packages/cinnamon.scm

@@ -253,7 +253,7 @@ as well as some desktop-wide documents.")
            pkg-config
            xorg-server-for-tests))
     (inputs
-     (list atk
+     (list at-spi2-core
            cinnamon-desktop
            exempi
            gsettings-desktop-schemas

gnu/packages/code.scm

@@ -695,57 +695,6 @@ Kcov uses DWARF debugging information for compiled programs to make it
 possible to collect coverage information without special compiler switches.")
     (license license:gpl2+)))
 
-(define-public rtags
-  (package
-    (name "rtags")
-    (version "2.18")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/Andersbakken/rtags")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (patches (search-patches "rtags-separate-rct.patch"))
-       (modules '((guix build utils)))
-       (snippet
-        ;; Part of spliting rct with rtags.
-        ;; Substitute #include "rct/header.h" with #include <rct/header.h>.
-        '(with-directory-excursion "src"
-           (delete-file-recursively "rct")        ;remove bundled copy
-           (let ((files (find-files "." ".*\\.cpp|.*\\.h")))
-             (substitute* files
-               (("#include ?\"rct/(.*.h)\"" all header)
-                (string-append "#include <rct/" header ">")))
-             #t)))
-       (sha256
-        (base32
-         "0raqjbkl1ykga4ahgl9xw49cgh3cyqcf42z36z7d6fz1fw192kg0"))))
-    (build-system cmake-build-system)
-    (arguments
-     '(#:build-type "RelWithDebInfo"
-       #:configure-flags
-       '("-DRTAGS_NO_ELISP_FILES=1")
-       #:tests? #f))
-    (native-inputs
-     (list pkg-config))
-    (inputs
-     (list bash-completion
-           clang
-           llvm
-           lua
-           rct
-           selene))
-    (home-page "https://github.com/Andersbakken/rtags")
-    (synopsis "Indexer for the C language family with Emacs integration")
-    (description
-     "RTags is a client/server application that indexes C/C++ code and keeps a
-persistent file-based database of references, declarations, definitions,
-symbolnames etc.  There’s also limited support for ObjC/ObjC++.  It allows you
-to find symbols by name (including nested class and namespace scope).  Most
-importantly we give you proper follow-symbol and find-references support.")
-    (license license:gpl3+)))
-
 (define-public colormake
   (package
     (name "colormake")

gnu/packages/containers.scm

@@ -375,7 +375,7 @@ contents, and discovering ways to shrink the size of Docker/OCI image.")
 (define-public guix-compose
   (package
     (name "guix-compose")
-    (version "0.1.1")
+    (version "0.2.0")
     (source
      (origin
        (method git-fetch)
@@ -384,7 +384,7 @@ contents, and discovering ways to shrink the size of Docker/OCI image.")
               (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1ij6rfs5pfykk8c53q029sl2qx3k572dqdfb6pn5s569l6697ci1"))))
+        (base32 "1dy48qkz3ifxagijpvwg7rmq7hz3pikhdcfral6djyc9ppmz8mbm"))))
     (build-system guile-build-system)
     (arguments
      (list
@@ -426,7 +426,7 @@ contents, and discovering ways to shrink the size of Docker/OCI image.")
                  "guile" "-L" "./modules" "-s" "tests/test-compose.scm")))))))
     (native-inputs (list guile-3.0))
     ;; Avoid setting propagated so that we use the user’s profile.
-    (inputs (list guix guile-yamlpp))
+    (inputs (list guix guile-dotenv guile-yamlpp))
     (native-search-paths
      (list $GUIX_EXTENSIONS_PATH))
     (synopsis "Guix' docker compose compatibility layer")

gnu/packages/cpp.scm

@@ -683,38 +683,6 @@ computer program to introspect and modify an object at runtime.  It is also
 the name of the library itself, which is written in C++.")
     (license license:expat)))
 
-(define-public rct
-  (let* ((commit "b3e6f41d9844ef64420e628e0c65ed98278a843a")
-         (revision "2"))
-    (package
-      (name "rct")
-      (version (git-version "0.0.0" revision commit))
-      (source (origin
-                (method git-fetch)
-                (uri (git-reference
-                      (url "https://github.com/Andersbakken/rct")
-                      (commit commit)))
-                (sha256
-                 (base32
-                  "1m2931jacka27ghnpgf1z1plkkr64z0pga4r4zdrfpp2d7xnrdvb"))
-                (patches (search-patches "rct-add-missing-headers.patch"))
-                (file-name (git-file-name name version))))
-      (build-system cmake-build-system)
-      (arguments
-       '(#:configure-flags
-         '("-DWITH_TESTS=ON"            ; To run the test suite
-           "-DRCT_RTTI_ENABLED=ON")))
-      (native-inputs
-       (list cppunit pkg-config))
-      (inputs
-       (list openssl zlib))
-      (home-page "https://github.com/Andersbakken/rct")
-      (synopsis "C++ library providing Qt-like APIs on top of the STL")
-      (description "Rct is a set of C++ tools that provide nicer (more Qt-like)
- APIs on top of Standard Template Library (@dfn{STL}) classes.")
-      (license (list license:expat        ; cJSON
-                     license:bsd-4)))))   ; everything else (LICENSE.txt)
-
 (define-public plutovg
   (package
     (name "plutovg")

gnu/packages/cross-base.scm

@@ -135,20 +135,10 @@
                                         (search-patches
                                          "ath9k-htc-firmware-binutils.patch")))
                  ((target-mingw? target)
-                  (package-with-extra-patches
-                   (package-with-extra-configure-variable
-                    ;; mingw binutils does not work correctly when configured
-                    ;; with `--enable-compressed-debug-sections`. An error
-                    ;; like the following will occur whenever you try to link:
-                    ;;
-                    ;;   x86_64-w64-mingw32-ld: final link failed: bad value
-                    ;;
-                    ;; TODO: This seems like a deeper problem that warrants
-                    ;; deeper investigation.
-                    binutils "--enable-compressed-debug-sections" "no")
-                   (search-patches
-                    "binutils-cross-windres.patch"
-                    "binutils-mingw-w64-deterministic.patch")))
+                  (package-with-extra-patches binutils
+                                              (search-patches
+                                               "binutils-cross-windres.patch"
+                                               "binutils-mingw-w64-deterministic.patch")))
                  (else binutils))
            target)))
 

gnu/packages/crypto.scm

@@ -1688,14 +1688,14 @@ structure.  However CryFS is not considered stable yet by the developers.")
 (define-public b3sum
   (package
     (name "b3sum")
-    (version "1.8.2")
+    (version "1.8.4")
     (source
       (origin
         (method url-fetch)
         (uri (crate-uri "b3sum" version))
         (file-name (string-append name "-" version ".tar.gz"))
         (sha256
-         (base32 "06qc6iv574km4j1ja4qhxyai680jkll58qzpz4mb79c0rk750dpd"))))
+         (base32 "0pkra5zh680cl9q92hpzmg9flz99b06bhpg7jyhymg1nkm0anw7a"))))
     (build-system cargo-build-system)
     (arguments
      (list

gnu/packages/databases.scm

@@ -1545,17 +1545,17 @@ and high-availability (HA).")
     (license license:gpl2)))                  ;'COPYING' says "version 2" only
 
 ;; Don't forget to update the other postgresql packages when upgrading this one.
-(define-public postgresql-16
+(define-public postgresql-17
   (package
     (name "postgresql")
-    (version "16.4")
+    (version "17.7")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://ftp.postgresql.org/pub/source/v"
                                   version "/postgresql-" version ".tar.bz2"))
               (sha256
                (base32
-                "0vvd73rzj0sl294v15bh8yslakqv412bxqzlkqxyjwxa8pb6c5wp"))
+                "1dg9labqgph2idaypb8khdvbag29pr3h4bqv5w8k7kgc08rk97pg"))
               (patches (search-patches
                         "postgresql-disable-normalize_exec_path.patch"))))
     (build-system gnu-build-system)
@@ -1585,18 +1585,22 @@ and high-availability (HA).")
           (add-after 'build 'build-contrib
             (lambda _
               (invoke "make" "-C" "contrib")))
+          ;; FIXME: Install manpages too.
+          ;; The 'install-mangpages phase in postgresql-16 fails silently here.
           (add-after 'install 'install-contrib
             (lambda _
-              (invoke "make" "-C" "contrib" "install")))
-          (add-after 'install 'install-manuals
-            (lambda _
-              (with-directory-excursion "doc/src/sgml"
-                (invoke "make" "install-man")
-                (invoke "make" "postgres.info")
-                (install-file "postgres.info"
-                              (string-append #$output "/share/info"))))))))
+              (invoke "make" "-C" "contrib" "install"))))))
     (native-inputs
-     (list docbook-xml-4.5 docbook2x libxml2 perl pkg-config texinfo))
+     (list bison
+           docbook-xml-4.5
+           docbook-xsl
+           docbook2x
+           flex
+           libxml2
+           libxslt
+           perl
+           pkg-config
+           texinfo))
     (inputs
      (list icu4c readline `(,util-linux "lib") openssl zlib))
     (home-page "https://www.postgresql.org/")
@@ -1610,18 +1614,49 @@ TIMESTAMP.  It also supports storage of binary large objects, including
 pictures, sounds, or video.")
     (license (license:x11-style "file://COPYRIGHT"))))
 
-(define-public postgresql-15
+(define-public postgresql-16
   (package
-    (inherit postgresql-16)
+    (inherit postgresql-17)
     (name "postgresql")
-    (version "15.8")
+    (version "16.10")
     (source (origin
-              (inherit (package-source postgresql-16))
+              (method url-fetch)
               (uri (string-append "https://ftp.postgresql.org/pub/source/v"
                                   version "/postgresql-" version ".tar.bz2"))
               (sha256
                (base32
-                "0snbxmlygf7m4cxjpscmz3yjn4lnqsw313y9xgpv7vk9k9gm20s4"))
+                "0hib575m9x3z8c71gkcv9jsyq77d3qk7q2zgzvfy6clwrvs8b16y"))
+              (patches (search-patches
+                        "postgresql-disable-normalize_exec_path.patch"))))
+    (arguments
+     (substitute-keyword-arguments (package-arguments postgresql-17)
+       ((#:phases phases #~%standard-phases)
+        #~(modify-phases #$phases
+            (add-after 'install 'install-manuals
+              (lambda _
+                (with-directory-excursion "doc/src/sgml"
+                  (invoke "make" "install-man")
+                  (invoke "make" "postgres.info")
+                  (install-file "postgres.info"
+                                (string-append #$output "/share/info")))))))))
+    (native-inputs (modify-inputs (package-native-inputs postgresql-17)
+                     (delete "bison")
+                     (delete "docbook-xsl")
+                     (delete "flex")
+                     (delete "libxslt")))))
+
+(define-public postgresql-15
+  (package
+    (inherit postgresql-16)
+    (name "postgresql")
+    (version "15.15")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://ftp.postgresql.org/pub/source/v"
+                                  version "/postgresql-" version ".tar.bz2"))
+              (sha256
+               (base32
+                "1ais46b2ij38y75i1w336as03pybyndsd2pp2q8gdjq9igmsllsp"))
               (patches (search-patches
                         "postgresql-disable-resolve_symlinks.patch"))))
     (native-inputs (modify-inputs native-inputs
@@ -1633,26 +1668,26 @@ pictures, sounds, or video.")
   (package
     (inherit postgresql-15)
     (name "postgresql")
-    (version "14.13")
+    (version "14.20")
     (source (origin
               (inherit (package-source postgresql-15))
               (uri (string-append "https://ftp.postgresql.org/pub/source/v"
                                   version "/postgresql-" version ".tar.bz2"))
               (sha256
                (base32
-                "0misc5yiklflz96n7wxcdzzg0lcc4ahd0flzqsg6mcjs955krajr"))))))
+                "0sv45dsmyplfys6dfdjdwmrczl46s82x35xdh311nxj02q7z29vm"))))))
 
-(define-public postgresql-13
+(define-deprecated/public postgresql-13 #f
   (package
     (inherit postgresql-14)
-    (version "13.16")
+    (version "13.23")
     (source (origin
               (inherit (package-source postgresql-14))
               (uri (string-append "https://ftp.postgresql.org/pub/source/v"
                                   version "/postgresql-" version ".tar.bz2"))
               (sha256
                (base32
-                "0rc8rpsw2lwa5af35zd8iifah02wg2rnn1i890h2h8zh55hvpjy9"))))))
+                "1mhz0h7b3dmc0nnxz1wp46j95jhyi3girykkr3gbg4mg4qkwihvf"))))))
 
 (define-public postgresql postgresql-14)
 
@@ -1691,7 +1726,7 @@ pictures, sounds, or video.")
 (define-public timescaledb
   (package
     (name "timescaledb")
-    (version "2.16.1")
+    (version "2.26.1")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1700,7 +1735,7 @@ pictures, sounds, or video.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1v17x00a15il4r3rbr0waqjv1nwzy6rcqxgfi2hdk1x235s5dg5h"))
+                "0zfm224jyz874pk4r9qlz5c2mn1xjvairhxh6widlbh3mn62m3j8"))
               (modules '((guix build utils)))
               (snippet
                ;; Remove files carrying the proprietary TIMESCALE license.
@@ -1710,8 +1745,7 @@ pictures, sounds, or video.")
                             '("scripts/c_license_header-timescale.h"
                               "scripts/license_tsl.spec"
                               "scripts/sql_license_tsl.sql"
-                              "test/perl/AccessNode.pm"
-                              "test/perl/DataNode.pm"
+                              "test/t/001_replication_telemetry.pl"
                               "test/perl/TimescaleNode.pm"))))))
     (build-system cmake-build-system)
     (arguments
@@ -1795,7 +1829,7 @@ pictures, sounds, or video.")
                  (lambda* (#:rest args)
                    (apply (assoc-ref gnu:%standard-phases 'check)
                           #:test-target "regresschecklocal" args))))))
-    (inputs (list openssl postgresql))
+    (inputs (list openssl postgresql-17))
     (home-page "https://www.timescale.com/")
     (synopsis "Time-series extension for PostgreSQL")
     (description
@@ -3044,7 +3078,7 @@ temporary directory, and destroys it when the perl script exits.")
 (define-public unixodbc
   (package
    (name "unixodbc")
-   (version "2.3.9")
+   (version "2.3.14")
    (source (origin
             (method url-fetch)
             (uri
@@ -3052,7 +3086,7 @@ temporary directory, and destroys it when the perl script exits.")
               "ftp://ftp.unixodbc.org/pub/unixODBC/unixODBC-"
               version ".tar.gz"))
             (sha256
-             (base32 "01xj65d02i3yjy7p9z08y9jakcs5szmz4rask868n7387nn3x0sj"))))
+             (base32 "0wa7a82h5dsba23155gfhh1sp4dsbaxq6pppp6q31z017vg18a2f"))))
    (build-system gnu-build-system)
    (synopsis "Data source abstraction library")
    (description "Unixodbc is a library providing an API with which to access

gnu/packages/diffoscope.scm

@@ -79,7 +79,7 @@
 (define-public diffoscope
   (package
     (name "diffoscope")
-    (version "315")
+    (version "317")
     (source
      (origin
        (method git-fetch)
@@ -88,7 +88,7 @@
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1q2q60hw36d1capqdrg6gp2220dg87bmxgmk52m7yml4xw13zi2p"))))
+        (base32 "13r96c49wrpx0xa8bbkki832w58gjdgqb4khjsaawk5mb5yv4c39"))))
     (build-system pyproject-build-system)
     (arguments
      (list

gnu/packages/disk.scm

@@ -1231,7 +1231,7 @@ passphrases.")
 (define-public ndctl
   (package
     (name "ndctl")
-    (version "78")
+    (version "84")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1240,7 +1240,7 @@ passphrases.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0rhmxjajxxslsikixlf9cdg5vcn42h7zzqkqj5p5pshxch368kn0"))))
+                "0jal7w4mk5l5j0qfays27kya8n1h2qwkncl0s317rfxp56bkjp6y"))))
     (build-system meson-build-system)
     (arguments
      ;; The test suite runs but SKIPs all tests: do not consider this tested!

gnu/packages/distributed.scm

@@ -51,7 +51,7 @@
 (define-public boinc-client
   (package
     (name "boinc-client")
-    (version "8.2.8")
+    (version "8.2.9")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -62,7 +62,7 @@
               (file-name (git-file-name "boinc" version))
               (sha256
                (base32
-                "1ppcf57p6dkv9dv5k90fj3xhbv9di2d3yjkg2flfv5d45s82lay8"))))
+                "0ik9423ii6kal29jdn907pxy8w86zpi8n158qx1gcsh8lsaif1v5"))))
     (build-system gnu-build-system)
     (arguments
      (list

gnu/packages/django.scm

@@ -549,6 +549,7 @@ when coding custom template tags.")
        (uri (git-reference
              (url "https://github.com/jazzband/django-taggit")
              (commit version)))
+       (file-name (git-file-name name version))
        (sha256
         (base32
          "1i8an3wcl7nygl5f565jcpyhyws9gabawazggxpf6m3vklxn3cj0"))))
@@ -709,13 +710,13 @@ your code.")
 (define-public python-django-filter
   (package
     (name "python-django-filter")
-    (version "25.1")
+    (version "25.2")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "django_filter" version))
               (sha256
                (base32
-                "0lvi82f3dnj89ip8hry8fq8w7x632r5p84dlr451rnm8izsfxj8y"))))
+                "08wgzqirabxzcdhh0wvv45hqr6dqxy3ifm7mjv86hi0zjd59h3kn"))))
     (build-system pyproject-build-system)
     (arguments
      '(#:phases

gnu/packages/dlang.scm

@@ -75,7 +75,8 @@
        (uri (string-append "https://github.com/ldc-developers/ldc/releases"
                            "/download/v" version "/ldc-" version "-src.tar.gz"))
        (sha256
-        (base32 "13pkg69wjj4ali4ikijicccpg8y6f2hghhb70z9lrqr2w3pkhqna"))))
+        (base32 "13pkg69wjj4ali4ikijicccpg8y6f2hghhb70z9lrqr2w3pkhqna"))
+       (patches (search-patches "ldc-i686-int128-alignment.patch"))))
     (build-system cmake-build-system)
     (arguments
      `(#:disallowed-references (,tzdata-for-tests)
@@ -372,6 +373,7 @@ integration tests...\n")
               ;; Do not build the shared libphobos2.so library, to avoid
               ;; retaining a reference to gcc:lib.
               "SHARED=0"
+              "DIFFABLE=1"              ;constant timestamp
               "VERBOSE=1")
       #:modules
       `(,@%default-gnu-modules
@@ -476,6 +478,15 @@ integration tests...\n")
               (phase-in-sub-dir 'build "dmd"))
             (add-after 'build 'build-phobos
               (phase-in-sub-dir 'build "phobos"))
+            (add-after 'build-phobos 'build-man
+              (lambda* (#:key make-flags #:allow-other-keys)
+                (with-directory-excursion "dmd/compiler/docs"
+                  (let ((dmd (or (which "gdmd")
+                                 (which "dmd"))))
+                    ((assoc-ref %standard-phases 'build)
+                     #:make-flags (cons
+                                   (string-append "DMD=" dmd)
+                                   make-flags))))))
             (replace 'check
               (phase-in-sub-dir 'check "dmd"))
             (add-after 'check 'check-phobos
@@ -501,7 +512,7 @@ integration tests...\n")
                       (for-each (cut install-file <> lib-lib)
                                 (find-files "." "^libdruntime\\.so[.0-9]*$")))
                     (copy-recursively "druntime/import" out-include)
-                    (copy-recursively "compiler/docs/man" out-man))
+                    (copy-recursively "generated/docs/man" out-man))
                   (with-directory-excursion "phobos"
                     (with-directory-excursion build-sub-dir
                       (install-file "libphobos2.a" out-lib)
@@ -676,6 +687,7 @@ needed.")
                  (lambda* (#:key tests? #:allow-other-keys)
                    (when tests?
                      (invoke "bin/rdmd" "rdmd_test.d" "bin/rdmd"
+                             "-m" (if #$(target-64bit?) "64" "32")
                              "--rdmd-default-compiler" "ldmd2"))))
                (replace 'install
                  (lambda* (#:key outputs #:allow-other-keys)

gnu/packages/dns.scm

@@ -295,35 +295,37 @@ prompt the user with the option to go with insecure DNS only.")
 (define-public dnsmasq
   (package
     (name "dnsmasq")
-    (version "2.90")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append
-                    "http://www.thekelleys.org.uk/dnsmasq/dnsmasq-"
-                    version ".tar.xz"))
-              (sha256
-               (base32
-                "1r09l537vi867hlpv6vl7nvqhscvq1kf04m896bfrgrpv2dk0l4f"))))
+    (version "2.92")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "http://thekelleys.org.uk/git/dnsmasq.git")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "055gn5kigz0m9y09vig97s1g257hnlkhw4wv9d9wdficnsxcbwwm"))))
     (build-system gnu-build-system)
+    (arguments
+     (list
+      #:tests? #f ;no tests
+      #:make-flags
+      #~(list (string-append "PREFIX=" #$output)
+              (string-append "CC=" #$(cc-for-target))
+              (string-append "PKG_CONFIG=" #$(pkg-config-for-target))
+              "COPTS=\"-DHAVE_DBUS\"")
+      #:phases
+      #~(modify-phases %standard-phases
+          (delete 'configure) ;no configure
+          (add-after 'install 'install-dbus
+            (lambda _
+              (install-file "dbus/dnsmasq.conf"
+                            (string-append #$output "/etc/dbus-1/system.d")))))))
     (native-inputs
      (list pkg-config))
     (inputs
      (list dbus))
-    (arguments
-     `(#:phases
-       (modify-phases %standard-phases
-         (delete 'configure)
-         (add-after 'install 'install-dbus
-           (lambda _
-             (install-file "dbus/dnsmasq.conf"
-                           (string-append %output "/etc/dbus-1/system.d")))))
-
-       #:make-flags (list (string-append "PREFIX=" (assoc-ref %outputs "out"))
-                          (string-append "CC=" ,(cc-for-target))
-                          (string-append "PKG_CONFIG=" ,(pkg-config-for-target))
-                          "COPTS=\"-DHAVE_DBUS\"")
-       #:tests? #f))                    ; no ‘check’ target
-    (home-page "https://www.thekelleys.org.uk/dnsmasq/doc.html")
+    (home-page "https://thekelleys.org.uk/dnsmasq/doc.html")
     (synopsis "Small caching DNS proxy and DHCP/TFTP server")
     (description
      "Dnsmasq is a light-weight DNS forwarder and DHCP server.  It is designed

gnu/packages/documentation.scm

@@ -70,6 +70,7 @@
   #:use-module (gnu packages qt)
   #:use-module (gnu packages sqlite)
   #:use-module (gnu packages sphinx)
+  #:use-module (gnu packages tex)
   #:use-module (gnu packages uglifyjs)
   #:use-module (gnu packages xml)
   #:use-module (gnu packages xorg))
@@ -108,10 +109,13 @@
                           #$output)
                          (("\\$cfg\\{'TMPSPACE'\\} = q'[^']*'")
                           "$cfg{'TMPSPACE'} = q'/tmp'")))))))
+    (propagated-inputs (list texlive-preview texlive-xcolor texlive-dvips))
     (inputs (list perl netpbm ghostscript))
     (synopsis "LaTeX documents to HTML")
     (description "LaTeX2HTML is a utility that converts LaTeX documents to web
-pages in HTML.")
+pages in HTML.  Since there are many different latex packages, it is expected
+that the user has their latex installation set up correctly when invoking
+@code{latex2html}.")
     (home-page "https://www.latex2html.org/")
     (license license:gpl2+)))
 

gnu/packages/duckdb.scm

@@ -148,13 +148,13 @@ system.")
 (define-public r-duckdb
   (package
     (name "r-duckdb")
-    (version "1.4.4")
+    (version "1.5.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "duckdb" version))
        (sha256
-        (base32 "1hch36v3lsymnx30lv3cjy12gs3v3mhd44ha97l7w9mwp9wbzmxl"))
+        (base32 "177621m08whqqk4yhj3zrr08l3d9hhlqh3gm9jzhi5cplg47cksq"))
        ;; This package bundles the duckdb sources and builds a custom variant
        ;; of duckdb.  I'd be happy to link it with our duckdb library instead,
        ;; but it does not seem possible to do that.
@@ -179,10 +179,12 @@ system.")
                          r-dplyr
                          r-remotes
                          r-rlang
+                         r-sf
                          r-testthat
                          r-tibble
                          r-vctrs
                          r-withr
+                         r-wk
                          tzdata-for-tests))
     (home-page "https://r.duckdb.org/")
     (synopsis "DBI package for the DuckDB database management system")

gnu/packages/education.scm

@@ -4,7 +4,7 @@
 ;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com>
 ;;; Copyright © 2017-2023 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr>
-;;; Copyright © 2018-2025 Nicolas Goaziou <mail@nicolasgoaziou.fr>
+;;; Copyright © 2018-2026 Nicolas Goaziou <mail@nicolasgoaziou.fr>
 ;;; Copyright © 2020 Robert Smith <robertsmith@posteo.net>
 ;;; Copyright © 2020 Guy Fleury Iteriteka <gfleury@disroot.org>
 ;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
@@ -385,7 +385,7 @@ not have any other specialized device.")
 (define-public openboard
   (package
     (name "openboard")
-    (version "1.7.3")
+    (version "1.7.7")
     (source
      (origin
        (method git-fetch)
@@ -394,7 +394,7 @@ not have any other specialized device.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1098pys5p82sx97xrhw54vlkn6jly0rhq8b09grmmx2h4mcpj2i2"))))
+        (base32 "1i27h84p77pl1chw791fjs3vyzsjvsqc9ky2mbw7g8xpzxz1nd9j"))))
     (build-system qt-build-system)
     (arguments
      (list

gnu/packages/electronics.scm

@@ -240,8 +240,8 @@ are also taken from the original.")
       (license license:gpl3+))))
 
 (define-public abc
-  (let ((commit "c18b9a24de46d3b0209afa416511b7a1127344f9")
-        (revision "9"))
+  (let ((commit "80c8a9a1928ef8148a6b504e9590ec07c55c8bcf")
+        (revision "10"))
     (package
       (name "abc")
       (version (git-version "0.0" revision commit))
@@ -253,7 +253,7 @@ are also taken from the original.")
                 (file-name (git-file-name name version))
                 (sha256
                  (base32
-                  "12fjhlr9r34l6kw2jyaalh53fs783r1h2zx0ldzaxxrbcslb0bxh"))))
+                  "1fbnwsd841z86vfv45443qfpx0l199vf08sgms8wyz19jw7m5ds6"))))
       (build-system gnu-build-system)
       (inputs
        (list readline))
@@ -278,7 +278,7 @@ formal verification.")
   (package
     (inherit abc)
     (name "abc-yosyshq")
-    (version "0.63")
+    (version "0.64")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -287,7 +287,7 @@ formal verification.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1nwj4zhjqjgvb7fh877j51kfccwzrc591ag25qm9jirycgq1cqx6"))))
+                "1jk74yq7dnrnai8r9hqc10jcjmgj50jxj6hsflmvc61acm1r3f8r"))))
     (home-page "https://github.com/YosysHQ/abc/")
     (description "ABC is a program for sequential logic synthesis and
 formal verification.  This is the Yosyshq fork of ABC.")
@@ -296,7 +296,7 @@ formal verification.  This is the Yosyshq fork of ABC.")
 (define-public apycula
   (package
     (name "apycula")
-    (version "0.31")
+    (version "0.32")
     ;; The pypi tar.gz file includes the necessary .pickle files, not available
     ;; in the home-page repository.
     (source
@@ -304,7 +304,7 @@ formal verification.  This is the Yosyshq fork of ABC.")
        (method url-fetch)
        (uri (pypi-uri "apycula" version))
        (sha256
-        (base32 "0pf43cd071kv5ann78hl5qrcj9vhndr46ds2g12sgnfjfvh6pfpg"))))
+        (base32 "0zz6mz1s7razbqsysaji7qwfsjj19av4mg7zclxaigz4hmq9ar0d"))))
     (build-system pyproject-build-system)
     (arguments
      (list #:tests? #f ;requires Gowin EDA tools
@@ -467,7 +467,7 @@ individual low-level driver modules.")
 (define-public eqy
   (package
     (name "eqy")
-    (version "0.63")
+    (version "0.64")
     (source
      (origin
        (method git-fetch)
@@ -476,7 +476,7 @@ individual low-level driver modules.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "05rk6gy0xnaksxqdkpm08i3ngh0adavfyfjyscw5l1b7d7yhfavh"))))
+        (base32 "1lsf8wm10wq67lmwz1ck30inl3byfy27ya39fj93gym5ys815ma6"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -1502,7 +1502,7 @@ an embedded event driven algorithm.")
 (define-public librelane
   (package
     (name "librelane")
-    (version "3.0.0")
+    (version "3.0.2")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1511,7 +1511,7 @@ an embedded event driven algorithm.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "01zi2v5qi26h09hwjafsq9k0anrc5g5fc6q5vg87k9lcwyfsi685"))))
+                "1v43adkw5c624nd06g11cb609v8pj3prfyyawbq3i4k1w1law597"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -2018,7 +2018,7 @@ which allows one to install the M8 firmware on any Teensy.")
 (define-public magic
   (package
     (name "magic")
-    (version "8.3.625")
+    (version "8.3.633")
     (source
      (origin
        (method git-fetch)
@@ -2027,7 +2027,7 @@ which allows one to install the M8 firmware on any Teensy.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0ld238cdq8mzzcx7vgk67aqim0ypbfyks486z59q19yzxpr6c42s"))))
+        (base32 "1rwrhb0q99rpv4lbiw1sqykwzf9gj1my2wkh6mp8g36rab2vhii3"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -2057,7 +2057,7 @@ versus schematic} tests and can assist with automatic routing.")
 (define-public mcy
   (package
     (name "mcy")
-    (version "0.63")
+    (version "0.64")
     (source
      (origin
        (method git-fetch)
@@ -2120,7 +2120,7 @@ coverage.")
 (define-public netgen
   (package
     (name "netgen")
-    (version "1.5.316")
+    (version "1.5.318")
     (source
      (origin
        (method git-fetch)
@@ -2129,7 +2129,7 @@ coverage.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1923mynqw1wjhlcij639gdqrkifyb5lcks1x11gwpgp4gijwj3qb"))))
+        (base32 "19rd8y2pspycr2296nhm60fhsgnzlyzb09wx2kgqzg6s7h6cmrr5"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -2690,20 +2690,20 @@ formats.")
 (define-public openroad
   (package
     (name "openroad")
-    (version "26Q1")
+    (version "26Q2")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
               (url "https://github.com/The-OpenROAD-Project/OpenROAD")
-              (commit "e06ca0f5f2e641cd7b138a4d9b4fdd290359eca8")
+              (commit version)
               ;; 26Q1 Uses:
-              ;; - forked, custom opensta: v2.2.0-1579-g9c9b5659
-              ;; - forked, custom (berkeley) abc: 20260104.1628-g4c756ffb8
+              ;; - forked, custom opensta: v2.2.0-1952-g43177bba
+              ;; - forked, custom (berkeley) abc: 20260301.0445-g17cadca08
               (recursive? #t)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "13x4kqi4j489k4sz56ws4aqhp60nff1i18z6hjd6xx8y7flaik0c"))))
+        (base32 "152j78c47wyq4sw42bwlxdhvs5g47a8jqz1qz5yzdsk9z5y4y7vl"))))
     (build-system qt-build-system)
     (arguments
      (list
@@ -2737,7 +2737,7 @@ formats.")
            flex
            googletest
            pkg-config
-           swig-4.0))
+           swig-4.4))
     (inputs
      (list abseil-cpp
            boost
@@ -2776,7 +2776,6 @@ clock tree synthesis, routing, parasitic extraction, and timing analysis.")
   (package
     (inherit openroad)
     (name "openroad-cli")
-    (build-system cmake-build-system)
     (arguments
      (delkw
       #:qtbase
@@ -3460,7 +3459,7 @@ form of AXI, AXI lite, and AXI stream modules.")
 (define-public python-edalize
   (package
     (name "python-edalize")
-    (version "0.6.5")
+    (version "0.6.6")
     (source
      (origin
        (method git-fetch)
@@ -3469,7 +3468,7 @@ form of AXI, AXI lite, and AXI stream modules.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1drmc126a12zlynx8ps9iwghaqs058pqj2xpdysxnrj26hg3sp15"))))
+        (base32 "115nc15n2cx4x9irjim07zkg0287418djqd6ja7rm8jrnyldvln9"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -3496,17 +3495,17 @@ form of AXI, AXI lite, and AXI stream modules.")
     (native-inputs
      (list python-pytest python-setuptools python-setuptools-scm))
     (propagated-inputs
-     (list python-importlib-metadata python-jinja2))
+     (list python-importlib-metadata python-jinja2 python-pandas))
     (home-page "https://github.com/olofk/edalize/")
     (synopsis "Python Library for interacting with EDA tools")
     (description
-     "This package implements a functionality to create project files for
-supported tools and run them in batch or GUI mode.  All EDA tools such as
-Icarus, Yosys, ModelSim, Vivado, Verilator, GHDL, Quartus etc get input HDL
-files (Verilog and VHDL) and some tool-specific files (constraint files,memory
-initialization files, IP description files etc).  Together with the files,
-perhaps a couple of Verilog `defines, some top-level parameters/generics or
-some tool-specific options are set.")
+     "This package can create project files for supported tools and run them in
+batch or GUI mode.  All EDA tools such as Icarus, Yosys, ModelSim, Vivado,
+Verilator, GHDL, Quartus etc get input HDL files (Verilog and VHDL) and some
+tool-specific files (constraint files,memory initialization files, IP
+description files etc).  Together with the files, perhaps a couple of Verilog
+`defines, some top-level parameters/generics or some tool-specific options are
+set.")
     (license license:bsd-2)))
 
 (define-public fusesoc
@@ -4000,7 +3999,7 @@ input and outputs an XML dataset.")
 (define-public qucs-s
   (package
     (name "qucs-s")
-    (version "25.2.0")                  ;update qucsator-rf accordingly
+    (version "26.1.0")                  ;update qucsator-rf accordingly
     (source
      (origin
        (method git-fetch)
@@ -4010,7 +4009,7 @@ input and outputs an XML dataset.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "0328irynm8vy4xjdip5286fd8nag1zdp0p6rcbhdhp4fca6wp5ak"))))
+         "0aiyrcrxln4v6qm2dmigb54wl0mj499q3g18pz87m1s2lfgicpb1"))))
     (build-system qt-build-system)
     (arguments
      (list
@@ -4232,7 +4231,7 @@ them usable as simple logic analyzer and/or oscilloscope hardware.")
 (define-public sby
   (package
     (name "sby")
-    (version "0.63")
+    (version "0.64")
     (source
      (origin
        (method git-fetch)
@@ -4241,7 +4240,7 @@ them usable as simple logic analyzer and/or oscilloscope hardware.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1p23w9jd95b86n7f94zpqdaz19fn2b2lyww1p8dcy9p3zrcn7750"))))
+        (base32 "0jksspdgq2grk4a80i5yfc9bazfij37wpmrlkvygpz9ys5ny1432"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -4290,8 +4289,8 @@ front-end program for Yosys-based formal hardware verification flows.")
     (license license:isc)))
 
 (define-public sby-gui
-  (let ((commit "6c977084c17c4842c504829c6d455a07d67e119c")
-        (revision "0"))
+  (let ((commit "0a89301bf347c9f42932186e49ba2c0014ff3661")
+        (revision "1"))
     (package
       (name "sby-gui")
       (version (git-version "0" revision commit))
@@ -4303,10 +4302,13 @@ front-end program for Yosys-based formal hardware verification flows.")
                 (commit commit)))
          (file-name (git-file-name name version))
          (sha256
-          (base32 "137x3s5mwbzlcv2p6671ijvbafzwhxpvszzfi9wifq0wcli6cxxg"))))
+          (base32 "1zp2c7zqclsfvl5xhb8zlc1dclp2s36w2nd0x80fazsxp7ksw5gr"))))
       (build-system qt-build-system)
       (arguments
-       (list #:tests? #f))               ;no tests
+       (list
+        #:qtbase qtbase                 ;for Qt 6
+        #:tests? #f))                   ;no tests
+      (native-inputs (list python-minimal-wrapper))
       (propagated-inputs (list sby))
       (home-page "https://github.com/YosysHQ/sby-gui/")
       (synopsis "Graphical user interface for code{sby}")
@@ -4661,7 +4663,7 @@ parallel computing platforms.  It also supports serial execution.")
 (define-public yosys
   (package
     (name "yosys")
-    (version "0.63")
+    (version "0.64")
     (source
      (origin
        (method git-fetch)
@@ -4669,7 +4671,7 @@ parallel computing platforms.  It also supports serial execution.")
               (url "https://github.com/YosysHQ/yosys")
               (commit (string-append "v" version))))
        (sha256
-        (base32 "1iaafzsc0pbd61m5hh12nzr2z4rn4n7i68l6ij9vli4m5zsxw39k"))
+        (base32 "13gw5msk1kv05jkb330nybvx2s0ixm6l6mdpyapnqmv3lkhby1mj"))
        (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (outputs '("out" "doc"))
@@ -4782,12 +4784,12 @@ parallel computing platforms.  It also supports serial execution.")
               (git-reference
                 (url "https://github.com/povik/yosys-slang")
                 ;; No tags, nor releases.
-                (commit "d82b0b163a725fc1a401fbb6b465cd862517ec1f")
+                (commit "4e53d772996184b07e9bfe784060f96e6cb0a267")
                 (recursive? #t)))  ;requires slang and fmt
              (file-name "yosys-slang")
              (sha256
               (base32
-               "07h4qssphggd4mbn376vldqwzj1i16y1ix455xzr4lgx6s2q9ryg")))))
+               "1jjr1b6xd1sr9fkyfyl4y2wkzl51m7g10bw97mnw81v2mzssrs2q")))))
     ;; Optional dependencies increase considerably package closure.
     ;; - gtkwave: required only for vcd2fst binary, used by ‘sim’ command.
     ;; - graphviz, xdot: used by ‘show’ command to display schematics.

gnu/packages/emacs-xyz.scm

@@ -9435,35 +9435,40 @@ column by drawing a thin line down the length of the editing window.")
     (license license:gpl3+)))
 
 (define-public emacs-greader
-  (let ((commit "b25974aeae49f11b91bb78d94ab51913fdfcdc05")) ;version bump
-    (package
-      (name "emacs-greader")
-      (version "0.13.1")
-      (source
-       (origin
-         (uri (git-reference
-                (url "https://gitlab.com/michelangelo-rodriguez/greader")
-                (commit commit)))
-         (method git-fetch)
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "1qkszb4yrfnzb2rqkf6vmzca53w68p78zb58frcxslxn7s5l7ih1"))))
-      (build-system emacs-build-system)
-      (arguments
-       (list #:tests? #f))              ;no tests
-      (inputs (list emacs-compat espeak-ng))
-      (home-page "https://gitlab.com/michelangelo-rodriguez/greader")
-      (synopsis
-       "Gnamù Reader, or Greader, sends buffer contents to a speech engine")
-      (description
-       "Greader is a module that sends any Emacs buffer to a @acronym{TTS,
+  (package
+    (name "emacs-greader")
+    (version "0.19.0")
+    (source
+     (origin
+       (uri (git-reference
+              (url "https://gitlab.com/michelangelo-rodriguez/greader")
+              (commit (string-append "v" version))))
+       (method git-fetch)
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "08c4i5qbr0ndbbps6y5kpp0lzfmxnwifrxssqkd9qdzj068k69k3"))))
+    (build-system emacs-build-system)
+    (arguments
+     (list #:tests? #f ;no tests
+           #:phases
+           #~(modify-phases %standard-phases
+               (add-after 'unpack 'make-info
+                 (lambda _
+                   (invoke "makeinfo" "--no-split" "greader.texi"))))))
+    (inputs (list emacs-compat espeak-ng))
+    (native-inputs (list texinfo))
+    (home-page "https://gitlab.com/michelangelo-rodriguez/greader")
+    (synopsis
+     "Gnamù Reader, or Greader, sends buffer contents to a speech engine")
+    (description
+     "Greader is a module that sends any Emacs buffer to a @acronym{TTS,
 Text To Speech} engine, such as Espeak-NG or Speech Dispatcher.
 
 The mode supports timer reading, automatic scrolling of buffers in modes like
 Info mode, and repeating reading of regions or the whole buffer.  It also
 includes a feature to facilitate the compilation of Espeak-NG
 pronunciations.")
-      (license license:gpl3+))))
+    (license license:gpl3+)))
 
 (define-public emacs-grep-a-lot
   (package
@@ -15153,6 +15158,27 @@ exporter already existing in Org mode.  It supports the Github flavored
 markdown features.")
     (license license:gpl3+)))
 
+(define-public emacs-grip-mode
+  (package
+    (name "emacs-grip-mode")
+    (version "2.5.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/seagle0128/grip-mode")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1mrpmzcxgc9hkv55d6kv79f8y6ldqrf5b48f0a4fy30qlgby2wyz"))))
+    (arguments (list #:tests? #f)) ;no tests
+    (build-system emacs-build-system)
+    (home-page "https://github.com/seagle0128/grip-mode")
+    (synopsis "Instant GitHub-flavored Markdown/Org preview")
+    (description "Instant GitHub-flavored Markdown/Org preview using
+@code{grip}, @code{mdopen} or @code{go-grip}.")
+    (license license:gpl3)))
+
 (define-public emacs-2048-game
   (package
     (name "emacs-2048-game")
@@ -15296,35 +15322,33 @@ them easier to distinguish from other, less important buffers.")
     (license license:expat)))
 
 (define-public emacs-embark
-  (let ((commit "0bdfd38d281d6375e6e675ce6f1bd597a9e3b136")
-        (revision "1"))
-    (package
-      (name "emacs-embark")
-      (version (git-version "1.1" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-                (url "https://github.com/oantolin/embark")
-                (commit commit)))
-         (sha256
-          (base32 "0m9y2wraapi744fg7y6cgz6y2gx0xzaglnxqalynz44ca9z6m6y4"))
-         (file-name (git-file-name name version))))
-      (build-system emacs-build-system)
-      (arguments
-       (list
-        #:tests? #false                 ;no tests
-        #:phases
-        #~(modify-phases %standard-phases
-            (add-before 'install 'makeinfo
-              (lambda _ (emacs-makeinfo))))))
-      (native-inputs (list texinfo))
-      (propagated-inputs
-       (list emacs-avy emacs-consult))
-      (home-page "https://github.com/oantolin/embark")
-      (synopsis "Emacs mini-buffer actions rooted in keymaps")
-      (description
-       "This package provides a sort of right-click contextual menu for Emacs
+  (package
+    (name "emacs-embark")
+    (version "1.2")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/oantolin/embark")
+              (commit version)))
+       (sha256
+        (base32 "1y97kibzz36wrzcjv997qp5pliikda0dhsm9461pin3q5gv8y6kq"))
+       (file-name (git-file-name name version))))
+    (build-system emacs-build-system)
+    (arguments
+     (list
+      #:tests? #false                 ;no tests
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'install 'makeinfo
+            (lambda _ (emacs-makeinfo))))))
+    (native-inputs (list texinfo))
+    (propagated-inputs
+     (list emacs-avy emacs-consult))
+    (home-page "https://github.com/oantolin/embark")
+    (synopsis "Emacs mini-buffer actions rooted in keymaps")
+    (description
+     "This package provides a sort of right-click contextual menu for Emacs
 offering you relevant @emph{actions} to use on a @emph{target} determined by
 the context.
 
@@ -15338,7 +15362,7 @@ get offered actions like deleting, copying, renaming, visiting in another
 window, running a shell command on the file, etc.  For buffers the actions
 include switching to or killing the buffer.  For package names the actions
 include installing, removing or visiting the homepage.")
-      (license license:gpl3+))))
+    (license license:gpl3+)))
 
 (define-public emacs-prescient
   (package
@@ -16975,6 +16999,35 @@ called.  If there are more, each window will have its first character
 highlighted.  Pressing that character will switch to that window.")
     (license license:gpl3+)))
 
+(define-public emacs-spatial-window
+  (package
+    (name "emacs-spatial-window")
+    (version "0.9.2")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/lewang/spatial-window")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "19whlw6p2q6ma20ifkr6iyrhj5l99vj1hv06s7j6j6pvgah27lm4"))))
+    (build-system emacs-build-system)
+    (arguments
+     (list
+      #:test-command
+      #~(list "emacs" "-Q" "-batch" "-L"  "."
+              "-l" "spatial-window-geometry-test.el"
+              "-l" "spatial-window-test.el"
+              "-f" "ert-run-tests-batch-and-exit")))
+    (propagated-inputs (list emacs-posframe))
+    (home-page "https://github.com/lewang/spatial-window")
+    (synopsis "Jump to windows by spatial position")
+    (description
+     "Jump to Emacs windows by pressing keys that match their spatial position
+on your keyboard.")
+    (license license:gpl3+)))
+
 (define-public emacs-windsize
   ;; There is no proper release.  The base version is extracted from the
   ;; "Version" keyword in the main file.
@@ -17319,11 +17372,11 @@ accessing slash commands.")
 
 (define-public emacs-claude-code-ide
   ;; Upstream does not make versioned releases.
-  (let ((commit "5f12e60c6d2d1802c8c1b7944bbdf935d5db1364")
-        (revision "1"))
+  (let ((commit "56db02ee386d009ddb8b1482310f1f9beeefb810")
+        (revision "2"))
     (package
       (name "emacs-claude-code-ide")
-      (version (git-version "0.2.6" revision commit))
+      (version (git-version "0.2.7" revision commit))
       (source
        (origin
          (method git-fetch)
@@ -17332,7 +17385,7 @@ accessing slash commands.")
                 (commit commit)))
          (file-name (git-file-name name version))
          (sha256
-          (base32 "148xcrqff6khpwf8nnadcyvz8h6mk45xz1498k0wbzy80yzd2axn"))))
+          (base32 "060n6alwgnxqpqcl74c1ixjm0am1pfj2kx7v3wi4bys6dsf50zd8"))))
       (build-system emacs-build-system)
       (arguments
        (list
@@ -17721,6 +17774,29 @@ etc), but also compiling languages (C, C++, Go, Java etc) and markup
 languages.")
     (license license:gpl3+)))
 
+(define-public emacs-quotable
+  (package
+    (name "emacs-quotable")
+    (version "1.1.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://codeberg.org/coopi/emacs-quotable")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "00359yljynmk6bqifvfrrradm4na9ap76isibi2d6s4i810szixh"))))
+    (build-system emacs-build-system)
+    (home-page "https://codeberg.org/coopi/emacs-quotable")
+    (synopsis "Emacs Lisp client for the Quotable API")
+    (description
+     "This package provides a programmatic interface for the
+@uref{https://github.com/lukePeavey/quotable, Quotable @acronym{API,
+Application Programming Interface}}, a free and open-source quotations
+@acronym{API}.")
+    (license license:agpl3+)))
+
 (define-public emacs-pkg-info
   (package
     (name "emacs-pkg-info")
@@ -24406,6 +24482,27 @@ key-bindings, avoiding most if not all the hassle introduced by key-binding
 conflicts.")
     (license license:gpl3+)))
 
+(define-public emacs-meow-tree-sitter
+  (package
+    (name "emacs-meow-tree-sitter")
+    (version "2.0.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://stable.melpa.org/packages/meow-tree-sitter-" version
+             ".tar"))
+       (sha256
+        (base32 "1sxa1flngzsj3hh3sp3kccwgsxq6d40wsn8vzgv0ahrxkz2s6fxg"))))
+    (build-system emacs-build-system)
+    (propagated-inputs (list emacs-meow))
+    (home-page "https://github.com/skissue/meow-tree-sitter")
+    (synopsis "Tree-sitter powered motions for Meow")
+    (description
+     "This package integrates the treesitter library in modern Emacs with
+Meow’s motions.")
+    (license (list license:gpl3+ license:mpl2.0))))
+
 (define-public emacs-xelb
   (package
     (name "emacs-xelb")
@@ -24436,11 +24533,9 @@ conflicts.")
             (lambda* (#:key inputs native-inputs #:allow-other-keys)
               (substitute* "xelb-gen"
                 (("/usr/bin/env") (which "env")))
-              (let ((xcb-proto #$(this-package-native-input "xcb-proto"))
-                    (emacs (search-input-file (or native-inputs inputs)
-                                              "/bin/emacs")))
-                (invoke "make"
-                        (format #f "PROTO_PATH=~a/share/xcb" xcb-proto))))))))
+              (invoke "make"
+                      (format #f "PROTO_PATH=~a/share/xcb"
+                              #$(this-package-native-input "xcb-proto"))))))))
     (native-inputs (list xcb-proto))
     (propagated-inputs (list emacs-compat))
     (home-page "https://github.com/emacs-exwm/xelb")
@@ -24537,7 +24632,8 @@ of XELB.")
     (name "emacs-exwm-no-x-toolkit")
     (synopsis "Emacs X window manager (without an X toolkit)")
     (propagated-inputs
-     (list emacs-xelb-no-x-toolkit))
+     (modify-inputs propagated-inputs
+       (replace "emacs-xelb" emacs-xelb-no-x-toolkit)))
     (arguments
      (substitute-keyword-arguments arguments
        ((#:emacs emacs) `,emacs-no-x-toolkit)))))
@@ -24903,36 +24999,91 @@ with Eglot.")
 (define-public emacs-jabber
   (package
     (name "emacs-jabber")
-    (version "0.9.0")
+    (version "0.10.3")
     (source (origin
               (method git-fetch)
               (uri (git-reference
-                    (url "https://codeberg.org/emacs-jabber/emacs-jabber")
-                    (commit (string-append "v" version))))
+                    (url "https://git.thanosapollo.org/emacs-jabber")
+                    (commit version)))
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0ain52p79sxll0bnsb4llfp1h4pqcqx3l6im4ibia06lg2aiqhpv"))))
+                "1v1a09h6ndqhkwyn44cnx1b0l4p155a09mfjrfmg62li50hvw1zm"))))
     (build-system emacs-build-system)
     (arguments
      (list
       #:lisp-directory "lisp"
+      #:include #~(cons "^[^/]*\\.so$"
+                        %default-include)
       #:emacs emacs                   ;requires gnutls
-      #:test-command #~(list "ert-runner" "../tests")
+      #:test-command #~(list "make" "-C" ".." "test")
       #:phases
       #~(modify-phases %standard-phases
-          (add-after 'unpack 'make-info
+          (add-after 'unpack 'build-native-module
             (lambda _
-              (invoke "makeinfo" "../jabber.texi"))))))
-    (native-inputs (list emacs-ert-runner texinfo))
-    (propagated-inputs (list emacs-fsm emacs-srv gnutls))
-    (home-page "https://codeberg.org/emacs-jabber/emacs-jabber")
+              (invoke "make" "-C" "../src")))
+          (add-before 'build-native-module 'unpack-picomemo
+            (lambda _
+              (copy-recursively
+               #$(this-package-native-input
+                  "emacs-jabber-picomemo")
+               "../src/picomemo")
+              (invoke "chmod" "--recursive" "u+w"
+                      "../src/picomemo")))
+          (add-after 'unpack 'fix-test-runner
+            (lambda _
+              ;; Replace grep -oP (Perl regex) with a
+              ;; POSIX-compatible alternative so the test
+              ;; runner counts results correctly.
+              (substitute* "../Makefile"
+                (("grep -oP '\\^Ran \\\\K\\[0-9\\]\\+'")
+                 (string-append
+                  "grep -o 'Ran [0-9]*'"
+                  " | grep -o '[0-9]*'")))))
+          (add-after 'unpack 'disable-failing-tests
+            (lambda _
+              ;; These 4 tests pass outside the build
+              ;; environment but fail inside it.
+              (define skip "\n  (skip-unless nil)")
+              (substitute*
+                  "../tests/jabber-disco-tests.el"
+                ((".*query-if-needed-cache-miss \\(\\)"
+                  all)
+                 (string-append all skip))
+                ((".*process-caps-modern.*queries \\(\\)"
+                  all)
+                 (string-append all skip)))
+              (substitute*
+                  (string-append
+                   "../tests/"
+                   "jabber-message-correct-tests.el")
+                ((".*correct-last-uses-original-id \\(\\)"
+                  all)
+                 (string-append all skip))
+                ((".*mam-syncing-skipped.*dispatch \\(\\)"
+                  all)
+                 (string-append all skip))))))))
+    (native-inputs
+     (list pkg-config
+           (origin
+             (method git-fetch)
+             (uri (git-reference
+                    (url "https://github.com/mierenhoop/picomemo")
+                    (commit "1.1.0")))
+             (file-name "emacs-jabber-picomemo")
+             (sha256
+              (base32
+               "044xd1gn9lpd5yrb3c1lmvqsc1chbkhd3vnh7800hxn23a0hxbzj")))))
+    (inputs (list mbedtls))
+    (propagated-inputs (list emacs-fsm))
+    (home-page "https://thanosapollo.org/projects/jabber/")
     (synopsis "XMPP (Jabber) client for Emacs")
     (description
      "@code{jabber.el} is an XMPP client for Emacs.  XMPP (also known as
 \"Jabber\") is an instant messaging system; see @url{https://xmpp.org} for
-more information.")
-    (license license:gpl2+)))
+more information.  It supports OMEMO end-to-end encryption via picomemo.")
+    (license (list license:gpl3+    ;gpl2+ elisp, gpl3+ C
+                   license:isc))))  ;picomemo
 
 (define-public emacs-jarchive
   (package
@@ -28071,7 +28222,7 @@ match and total match information in the mode-line in various search modes.")
 (define-public emacs-pg
   (package
     (name "emacs-pg")
-    (version "0.62")
+    (version "0.6.4")
     (source (origin
               (method git-fetch)
               (uri (git-reference (url "https://github.com/emarsden/pg-el")
@@ -28079,7 +28230,7 @@ match and total match information in the mode-line in various search modes.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0fjzrn5b4s00km71ya98vwwfyvd4rvcywxdxqzy5xfrv8crm92w6"))))
+                "0w9a8y3s2dbmpqbbnxycxd38niqq2slzr26bfl4v1pfcm0w7skfz"))))
     (build-system emacs-build-system)
     (propagated-inputs (list emacs-peg))
     (home-page "https://github.com/emarsden/pg-el")
@@ -28095,7 +28246,7 @@ end users.")
 (define-public emacs-pgmacs
   (package
     (name "emacs-pgmacs")
-    (version "0.42")
+    (version "0.30")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -28104,7 +28255,7 @@ end users.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0pf8y64hka1fl47dphmh4xgxiwfsd0g4q2fazq5yc48zwr9nsf02"))))
+                "0f4mbamk2n9l7qwhi2n1kwvng6wa9yp6k2w1qn6yc07pri2mb6yc"))))
     (build-system emacs-build-system)
     (propagated-inputs
      (list emacs-pg))
@@ -28113,6 +28264,12 @@ end users.")
     (home-page "https://github.com/emarsden/pgmacs")
     (license license:gpl3+)))
 
+(define-public emacs-pgmacs-0.42
+  (package
+    (inherit emacs-pgmacs)
+    (version "0.42")
+    (properties `((superseded . ,emacs-pgmacs)))))
+
 (define-public emacs-finalize
   (package
   (name "emacs-finalize")
@@ -39283,10 +39440,16 @@ user interfaces for various built-in modes.")
               (make-file-writable "calibredb-core.el")
               (let ((calibredb (search-input-file inputs "/bin/calibredb"))
                     (fetch-ebook-metadata
-                     (search-input-file inputs "/bin/fetch-ebook-metadata")))
+                     (search-input-file inputs "/bin/fetch-ebook-metadata"))
+                    (ebook-convert
+                     (search-input-file inputs "/bin/ebook-convert"))
+                    (calibre-debug
+                     (search-input-file inputs "/bin/calibre-debug")))
                 (emacs-substitute-variables "calibredb-core.el"
                   ("calibredb-fetch-metadata-program" fetch-ebook-metadata)
-                  ("calibredb-program" calibredb))))))))
+                  ("calibredb-program" calibredb)
+                  ("calibredb-convert-program" ebook-convert)
+                  ("calibredb-debug-program" calibre-debug))))))))
     (inputs
      (list calibre))
     (propagated-inputs
@@ -40986,7 +41149,7 @@ Lisp's (relatively new) EIEIO object oriented libraries.")
 (define-public emacs-fj
   (package
     (name "emacs-fj")
-    (version "0.33")
+    (version "0.34")
     (source
      (origin
        (method git-fetch)
@@ -40995,10 +41158,10 @@ Lisp's (relatively new) EIEIO object oriented libraries.")
               (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0cfzw9shd6jjir9zqcqbsz8vidsvs609a58aakh54dylngp52qmh"))))
+        (base32 "1y3k82q5iii7ddm6yj7397x2jscbcnvapd04zc5wjkqdr50cay3l"))))
     (build-system emacs-build-system)
     (arguments (list #:tests? #f))      ;depends on exemplify-ert
-    (propagated-inputs (list emacs-fedi emacs-magit emacs-tp))
+    (propagated-inputs (list emacs-fedi emacs-magit emacs-tp emacs-transient))
     (home-page "https://codeberg.org/martianh/fj.el")
     (synopsis "Client for Forgejo instances")
     (description
@@ -42059,10 +42222,10 @@ service, and connect it with Emacs via inter-process communication.")
       (license license:gpl3+))))
 
 (define-public emacs-telega
-  (let ((commit "805819bf81dffe2922e9e06ae02d58429d03aa1a"))
+  (let ((commit "8078beccf88c132d504ba9031062a6a2c65a1c8b"))
     (package
       (name "emacs-telega")
-      (version "0.8.601")               ; see telega-version in telega.el
+      (version "0.8.620")               ; see telega-version in telega.el
       (source
        (origin
          (method git-fetch)
@@ -42070,7 +42233,7 @@ service, and connect it with Emacs via inter-process communication.")
                (url "https://github.com/zevlg/telega.el")
                (commit commit)))
          (sha256
-          (base32 "0d02ymr5fw6fknzf9ikaky48swd9yfp5zn846zlwb5083p6bpmis"))
+          (base32 "1m7gs90hrmmwm7pvf5iz3y4v39psp6kbnw1d97q6v55hhgq3isxz"))
          (file-name (git-file-name "emacs-telega" version))
          (patches
           (search-patches "emacs-telega-test-env.patch"))))
@@ -46525,7 +46688,7 @@ Fennel code within Emacs.")
 (define-public emacs-org-modern
   (package
     (name "emacs-org-modern")
-    (version "1.12")
+    (version "1.13")
     (source
      (origin
        (method git-fetch)
@@ -46533,10 +46696,18 @@ Fennel code within Emacs.")
              (url "https://github.com/minad/org-modern")
              (commit version)))
        (sha256
-        (base32 "01p5k85hj677x2vk7j7a88gchp51ybiaj6iqmdhxivmcw3lb6ibi"))
+        (base32 "16i1nwdilhpjlphpbwi8vjfwfb721gm0mm37hjx570wx4sskvg30"))
        (file-name (git-file-name name version))))
     (build-system emacs-build-system)
+    (arguments
+     (list
+      #:tests? #f                       ;no tests
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'install 'makeinfo
+            (lambda _ (emacs-makeinfo))))))
     (propagated-inputs (list emacs-compat))
+    (native-inputs (list texinfo))
     (home-page "https://github.com/minad/org-modern")
     (synopsis "Modern Org style")
     (description

gnu/packages/emacs.scm

@@ -644,32 +644,6 @@ editor (console only)")
     (description "This Emacs build implements graphical UI purely in terms
 of GTK.")))
 
-(define-public emacs-xwidgets
-  (package/inherit emacs
-    (name "emacs-xwidgets")
-    (synopsis "The extensible, customizable, self-documenting text
-editor (with xwidgets support)")
-    (arguments
-     (substitute-keyword-arguments arguments
-       ((#:configure-flags flags #~'())
-        #~(cons "--with-xwidgets" #$flags))))
-    (inputs
-     (modify-inputs inputs
-       (prepend webkitgtk-with-libsoup2 libxcomposite)))))
-
-(define-public emacs-pgtk-xwidgets
-  (package
-    (inherit emacs-pgtk)
-    (name "emacs-pgtk-xwidgets")
-    (synopsis "Emacs text editor with @code{xwidgets} and @code{pgtk} support")
-    (arguments
-     (substitute-keyword-arguments arguments
-       ((#:configure-flags flags #~'())
-        #~(cons "--with-xwidgets" #$flags))))
-    (inputs
-     (modify-inputs inputs
-       (prepend gsettings-desktop-schemas webkitgtk-with-libsoup2)))))
-
 (define-public emacs-lucid
   (package/inherit emacs-no-x
     (name "emacs-lucid")
@@ -774,7 +748,6 @@ editor (with wide ints)" )
 
 (define-public emacs-next (emacs->emacs-next emacs))
 (define-public emacs-next-pgtk (emacs->emacs-next emacs-pgtk))
-(define-public emacs-next-pgtk-xwidgets (emacs->emacs-next emacs-pgtk-xwidgets))
 (define-deprecated-package emacs-next-tree-sitter
   emacs-next)
 

gnu/packages/embedded.scm

@@ -65,6 +65,7 @@
   #:use-module (gnu packages libffi)
   #:use-module (gnu packages libftdi)
   #:use-module (gnu packages libusb)
+  #:use-module (gnu packages linux)
   #:use-module (gnu packages messaging)
   #:use-module (gnu packages ncurses)
   #:use-module (gnu packages perl)
@@ -1505,7 +1506,8 @@ hardware.  The utility support USB and UART as serial link.")
                  (apply (assoc-ref cargo:%standard-phases phase)
                         #:cargo-target #$(cargo-triplet)
                         args))
-               '(unpack-rust-crates
+               '(prepare-rust-crates
+                 unpack-rust-crates
                  configure
                  check-for-pregenerated-files
                  patch-cargo-checksums)))))))
@@ -2066,26 +2068,27 @@ operations.")
     (license license:asl2.0)))
 
 (define-public ts4900-utils
-  ;; There are no proper release nor tag; use the latest commit.
-  (let ((revision "0")
-        (commit "e10a12f8050d1d1229e711c7cfab8a0d5d93ee58"))
-    (package
-      (name "ts4900-utils")
-      (version (git-version "0.0.0" revision commit))
-      (source (origin
-                (method git-fetch)
-                (uri (git-reference
-                      (url "https://github.com/embeddedTS/ts4900-utils")
-                      (commit commit)))
-                (file-name (git-file-name name version))
-                (sha256
-                 (base32
-                  "1vr8i425qijbwgbc10av3wr35p3x11wy6y442w0ja0yny7si8wp8"))))
-      (build-system gnu-build-system)
-      (native-inputs (list autoconf automake))
-      (home-page "https://github.com/embeddedTS/ts4900-utils")
-      (synopsis "Utilities for the TS-4900 board family")
-      (description "This package contains utilities useful for boards of the
+  (package
+    (name "ts4900-utils")
+    (version "3.0.0")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                     (url "https://github.com/embeddedTS/ts4900-utils")
+                     (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "08x40ii56v4cmnz9hk6rvjrc500k1bij5ns52360vczznc8lx8bx"))))
+    (build-system gnu-build-system)
+    (native-inputs
+     (list autoconf
+           automake
+           libgpiod
+           pkg-config))
+    (home-page "https://github.com/embeddedTS/ts4900-utils")
+    (synopsis "Utilities for the TS-4900 board family")
+    (description "This package contains utilities useful for boards of the
 TS-4900 family.  The included commands are:
 @itemize @code
 @item adc8390
@@ -2098,7 +2101,7 @@ TS-4900 family.  The included commands are:
 @item tsmicroupdate
 @item tssilomon
 @end itemize")
-      (license license:bsd-2))))
+    (license license:bsd-2)))
 
 (define-public cc-tool
   (package

gnu/packages/emulators.scm

@@ -6,7 +6,7 @@
 ;;; Copyright © 2015, 2018, 2023 David Thompson <dthompson2@worcester.edu>
 ;;; Copyright © 2016 Manolis Fragkiskos Ragkousis <manolis837@gmail.com>
 ;;; Copyright © 2016, 2017, 2018, 2020 Efraim Flashner <efraim@flashner.co.il>
-;;; Copyright © 2017-2024 Nicolas Goaziou <mail@nicolasgoaziou.fr>
+;;; Copyright © 2017-2024, 2026 Nicolas Goaziou <mail@nicolasgoaziou.fr>
 ;;; Copyright © 2017, 2020, 2021 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2017, 2018, 2019 Rutger Helling <rhelling@mykolab.com>
 ;;; Copyright © 2019 Pierre Neidhardt <mail@ambrevar.xyz>
@@ -3247,14 +3247,14 @@ that compiles to WebAssembly.")
 (define-public scummvm
   (package
     (name "scummvm")
-    (version "2.9.1")
+    (version "2026.2.0")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://downloads.scummvm.org/frs/scummvm/" version
                            "/scummvm-" version ".tar.xz"))
        (sha256
-        (base32 "1qspqawdazsxisxm1lxzgi0i4gx54qd10xyk3nmmirwxz9mg70ka"))))
+        (base32 "1wv0z9c4dnjywgla9zhbkgnzahj829ybvcx9jw67hdmagnbys42f"))))
     (build-system gnu-build-system)
     (arguments
      (list

gnu/packages/engineering.scm

@@ -50,6 +50,7 @@
 ;;; Copyright © 2026 Cayetano Santos <csantosb@inventati.org>
 ;;; Copyright © 2026 Daniel Khodabakhsh <d@niel.khodabakh.sh>
 ;;; Copyright © 2026 Spencer King <spencer.king@wustl.edu>
+;;; Copyright © 2026 Brent Wedderburn <mb@bean.za.net>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -253,13 +254,21 @@ their devices.")
           (replace 'build (assoc-ref gnu:%standard-phases 'build))
           (replace 'check (assoc-ref gnu:%standard-phases 'check))
           (replace 'install
-            (lambda* (#:key outputs #:allow-other-keys)
-              (let ((bin   (string-append #$output "/bin"))
-                    (share (string-append #$output "/share/librecad")))
+            (lambda _
+              (let* ((bin (string-append #$output "/bin"))
+                     (share (string-append #$output "/share"))
+                     (apps (string-append share "/applications"))
+                     (icons (string-append share "/icons/hicolor/128x128/apps")))
                 (mkdir-p bin)
                 (install-file "unix/librecad" bin)
                 (mkdir-p share)
-                (copy-recursively "unix/resources" share)))))))
+                (copy-recursively "unix/resources"
+                                  (string-append share "/librecad"))
+                (mkdir-p apps)
+                (install-file "desktop/librecad.desktop" apps)
+                (mkdir-p icons)
+                (copy-file "librecad/res/main/librecad.png"
+                           (string-append icons "/librecad.png"))))))))
     (inputs
      (list bash-minimal boost muparser freetype qtbase-5 qtsvg-5))
     (native-inputs
@@ -2816,7 +2825,7 @@ dynamics is used by FreeCAD 1.0.0 for its new Assembly workbench.")
            qtwayland
            sqlite
            onetbb                       ;same version as opencascade-occt
-           vtk
+           vtk-9.5
            xerces-c
            yaml-cpp
            zlib))

gnu/packages/fabric-management.scm

@@ -186,7 +186,7 @@ testing InfiniBand networks.")
 (define-public ucx
   (package
     (name "ucx")
-    (version "1.19.0")
+    (version "1.20.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -196,7 +196,7 @@ testing InfiniBand networks.")
               (patches (search-patches "ucx-tcp-iface-ioctl.patch"))
               (sha256
                (base32
-                "12j9200iyg6d0yr84r25hcpq8qqzfaa08klbhvgrqpflpfcljz4z"))
+                "12w1mxacml1w8zvl1hpn786cs77y056b9hxv7q1kq482bgc2si0v"))
               (snippet
                ;; As seen in commit b0a275a5492125a13020cd095fe9934e0b5e7c6a.
                #~(begin (use-modules (guix build utils))

gnu/packages/fcitx5.scm

@@ -34,6 +34,7 @@
   #:use-module (gnu packages anthy)
   #:use-module (gnu packages boost)
   #:use-module (gnu packages compression)
+  #:use-module (gnu packages cpp)
   #:use-module (gnu packages curl)
   #:use-module (gnu packages datastructures)
   #:use-module (gnu packages dictionaries)
@@ -95,7 +96,7 @@ client.")
 (define-public fcitx5
   (package
     (name "fcitx5")
-    (version "5.1.16")
+    (version "5.1.19")
     (source
      (origin
        (method url-fetch)
@@ -103,9 +104,14 @@ client.")
              "https://download.fcitx-im.org/fcitx5/fcitx5/fcitx5-"
              version "_dict.tar.zst"))
        (sha256
-        (base32 "0lwp90wjrkiws121rqn9kzdz6p1ncsk18dkmbv0zi37yqx2mv180"))))
+        (base32 "1ngsadqdrwy99w63dmk493gg56j7r991v6pq1nwkx6apib9ykpc0"))
+       (snippet
+        #~(begin
+            (use-modules (guix build utils))
+            (delete-file-recursively "third_party")))))
     (arguments
-     (list #:configure-flags #~(list "-DUSE_SYSTEMD=OFF")))
+     (list #:configure-flags #~(list "-DUSE_SYSTEMD=OFF"
+                                     "-DUSE_SYSTEM_YOGA=ON")))
     (build-system cmake-build-system)
     (inputs
      (list cairo
@@ -118,12 +124,12 @@ client.")
            gettext-minimal
            glib
            iso-codes/pinned
-           json-c
            libevent
            libuv
            libxcb
            libxkbcommon
            libxkbfile
+           nlohmann-json
            pango
            `(,util-linux "lib")         ;For libuuid.
            wayland
@@ -132,7 +138,8 @@ client.")
            xcb-util
            xcb-util-keysyms
            xcb-util-wm
-           xkeyboard-config))
+           xkeyboard-config
+           yoga))
     (native-inputs
      (list extra-cmake-modules
            zstd
@@ -154,7 +161,7 @@ client.")
 (define-public fcitx5-lua
   (package
     (name "fcitx5-lua")
-    (version "5.0.15")
+    (version "5.0.16")
     (source
      (origin
        (method url-fetch)
@@ -162,7 +169,7 @@ client.")
              "https://download.fcitx-im.org/fcitx5/fcitx5-lua/fcitx5-lua-"
              version ".tar.zst"))
        (sha256
-        (base32 "1yp5z97m8n7fwvxps1gn8pflg69j3yawgabz36bpd4wl43zkgchg"))))
+        (base32 "1zjiyadhqq8hijjv09khyj2shaw3ri4jgmb1ql67w9366wd0ykj2"))))
     (build-system cmake-build-system)
     (arguments
      (list
@@ -171,7 +178,7 @@ client.")
     (inputs
      (list fcitx5 lua gettext-minimal))
     (native-inputs
-     (list extra-cmake-modules))
+     (list extra-cmake-modules pkg-config))
     (home-page "https://github.com/fcitx/fcitx5-lua")
     (synopsis "Lua support for Fcitx 5")
     (description "Fcitx5-lua allows writing Fcitx5 extension in Lua.")
@@ -180,14 +187,14 @@ client.")
 (define-public libime
   (package
     (name "libime")
-    (version "1.1.12")
+    (version "1.1.14")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://download.fcitx-im.org/fcitx5/libime/libime-"
                            version "_dict.tar.zst"))
        (sha256
-        (base32 "02n6xbbxfckzx5sqrclnh4cvqlnj9c5rpys07kd8r8m51paqzigq"))))
+        (base32 "17r54fd6whvcxn389k4ah9mj1fc61zgama5nhiv1ilx40n1hnnpv"))))
     (build-system cmake-build-system)
     (inputs
      (list fcitx5 boost (list zstd "lib")))
@@ -202,7 +209,7 @@ editors.")
 (define-public fcitx5-gtk
   (package
     (name "fcitx5-gtk")
-    (version "5.1.4")
+    (version "5.1.6")
     (source
      (origin
        (method url-fetch)
@@ -210,7 +217,7 @@ editors.")
                            "/fcitx5-gtk/fcitx5-gtk-"
                            version ".tar.zst"))
        (sha256
-        (base32 "0lwl17mbfm3pxpd3y7h4sxf77npr16hyzygrc7a6v26bx6ycbkqx"))))
+        (base32 "0qj5gjdnrxcyz6a455b4379iwnzazw5a6c6dyk6wz0d2bgainc75"))))
     (build-system cmake-build-system)
     (arguments
      (list
@@ -324,7 +331,7 @@ IM module for GTK+3 applications.
 (define-public fcitx5-qt
   (package
     (name "fcitx5-qt")
-    (version "5.1.11")
+    (version "5.1.13")
     (source
      (origin
        (method url-fetch)
@@ -332,7 +339,7 @@ IM module for GTK+3 applications.
                            "/fcitx5-qt/fcitx5-qt-"
                            version ".tar.zst"))
        (sha256
-        (base32 "0mc396zfafs34jraj9fdk0wyzvdzg4xi605rhrd492xcpf25b59v"))))
+        (base32 "1yawhwnycrqp1flik3hc2vskvsyjfm6rkcdhsqnawix22r2n1wl0"))))
     (build-system cmake-build-system)
     (arguments
      (list #:configure-flags
@@ -363,7 +370,7 @@ for Qt based application.")
 (define-public fcitx5-anthy
   (package
     (name "fcitx5-anthy")
-    (version "5.1.8")
+    (version "5.1.10")
     (source
      (origin
        (method url-fetch)
@@ -371,7 +378,7 @@ for Qt based application.")
                            "/fcitx5-anthy/fcitx5-anthy-"
                            version ".tar.zst"))
        (sha256
-        (base32 "1kv930nxz6q8ijb319fnnkzdyigbi36f2cwijnv4sy3rd0nykxrv"))))
+        (base32 "11h7b687xj2k1hp7dqj6wh5y6i55cm8m5pqbi5vbflgg0cy5v1mp"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f)) ;; no tests
@@ -387,7 +394,7 @@ the Anthy input method.")
 (define-public fcitx5-skk
   (package
     (name "fcitx5-skk")
-    (version "5.1.8")
+    (version "5.1.10")
     (source
      (origin
        (method git-fetch)
@@ -396,14 +403,14 @@ the Anthy input method.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "11h6y7rv6yppp7iy8csy7r2pi2mlnjgl8h4h8ghfwab1gm7v32fn"))))
+        (base32 "1fjiyx6dyiqxlypr1k4024lnc077xsnx4qwrwx9hj3yjdni5f2p0"))))
     (build-system cmake-build-system)
     (arguments
      (list #:tests? #f      ; no tests
            #:configure-flags
-           #~(list (string-append "-DSKK_DEFAULT_PATH="
+           #~(list (string-append "-DSKK_PATH="
                                   #$(this-package-input "skk-jisyo")
-                                  "/share/skk/SKK-JISYO.L"))))
+                                  "/share/skk"))))
     (native-inputs
      (list extra-cmake-modules gobject-introspection
            pkg-config gettext-minimal))
@@ -423,14 +430,14 @@ backend.")
 (define-public fcitx5-unikey
   (package
     (name "fcitx5-unikey")
-    (version "5.1.8")
+    (version "5.1.10")
     (source (origin
               (method git-fetch)
               (uri (git-reference
                     (url "https://github.com/fcitx/fcitx5-unikey")
                     (commit version)))
               (sha256
-               (base32 "1nai5v6r367iwj8yxg4flv41my57l88l9vy0id9wr3hvrvls9v31"))
+               (base32 "1ddg5648r8jbdr8khawfhl26020snvrlgjwppw5rlh4iw3a4m143"))
               (file-name (git-file-name name version))))
     (build-system qt-build-system)
     (arguments
@@ -450,14 +457,14 @@ backend.")
 (define-public fcitx5-chewing
   (package
     (name "fcitx5-chewing")
-    (version "5.1.9")
+    (version "5.1.11")
     (source (origin
               (method git-fetch)
               (uri (git-reference
                     (url "https://github.com/fcitx/fcitx5-chewing")
                     (commit version)))
               (sha256
-               (base32 "1mgpxvmxfbqy8gymdsdmspgknh0pc751dm5rsrvdvfbd5lsa6pn6"))
+               (base32 "1x4a4vcb7vg9dx0f2bjrb2v6dcr8cwxnm8gdd47fkxqn890rgrnc"))
               (file-name (git-file-name name version))))
     (build-system cmake-build-system)
     (arguments
@@ -479,7 +486,7 @@ backend.")
 (define-public fcitx5-chinese-addons
   (package
     (name "fcitx5-chinese-addons")
-    (version "5.1.10")
+    (version "5.1.12")
     (source
      (origin
        (method url-fetch)
@@ -487,7 +494,7 @@ backend.")
                            "/fcitx5-chinese-addons/fcitx5-chinese-addons-"
                            version "_dict.tar.zst"))
        (sha256
-        (base32 "11gnywigqys3gndb175nxk10k1ld3xvwd6kggqnxs95imc2004dd"))))
+        (base32 "09kk8r6pcxjhivwv4z5cdv2pqy0ry8ngnfbrcmwagzyq2jq9p2cr"))))
     (build-system cmake-build-system)
     (arguments
      (list #:configure-flags
@@ -540,7 +547,7 @@ including input methods previous bundled inside Fcitx 4:
 (define-public fcitx5-configtool
   (package
     (name "fcitx5-configtool")
-    (version "5.1.11")
+    (version "5.1.13")
     (source
      (origin
        (method url-fetch)
@@ -548,7 +555,7 @@ including input methods previous bundled inside Fcitx 4:
              "https://download.fcitx-im.org/fcitx5"
              "/fcitx5-configtool/fcitx5-configtool-" version ".tar.zst"))
        (sha256
-        (base32 "1c5pw6p33z7lyk16jr1w72snazdc4q83ywn0gsk68qgmmfql5qr1"))))
+        (base32 "1sr8ri68qbkgvnj9pr5yw680zq506h26ymfmyz7ihw5ri14a6klr"))))
     (build-system qt-build-system)
     (arguments
      (list #:qtbase qtbase
@@ -661,7 +668,7 @@ for Fcitx 5 with following color variants:
 (define-public fcitx5-rime
   (package
     (name "fcitx5-rime")
-    (version "5.1.12")
+    (version "5.1.13")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://download.fcitx-im.org/fcitx5"
@@ -669,7 +676,7 @@ for Fcitx 5 with following color variants:
                                   ".tar.zst"))
               (sha256
                (base32
-                "1blqfk8zpzd5v2r7gwjy12jbnsh26pcvad8q4mmhlg5j10yppg03"))))
+                "03wcdgdhkvw5341vjv3idyksykm65y0873vkcrsi16dsp8w0h7i8"))))
     (build-system cmake-build-system)
     (arguments
      '(#:tests? #f ;no tests
@@ -700,7 +707,7 @@ output.")
 (define-public fcitx5-hangul
   (package
     (name "fcitx5-hangul")
-    (version "5.1.7")
+    (version "5.1.9")
     (source
      (origin
        (method git-fetch)
@@ -709,7 +716,7 @@ output.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "02lkbwg25jr4hazjyxcy69midfsmxc0ksbdrfwbmqcfa3kz5d9gb"))))
+        (base32 "0ja5faara4xz8waccpa5gbi3prh02hh3gpf915czhbkihffby6ng"))))
     (build-system cmake-build-system)
     (native-inputs (list extra-cmake-modules pkg-config gettext-minimal))
     (inputs (list fcitx5 libhangul))

gnu/packages/file-systems.scm

@@ -88,6 +88,7 @@
   #:use-module (gnu packages golang-build)
   #:use-module (gnu packages golang-check)
   #:use-module (gnu packages golang-crypto)
+  #:use-module (gnu packages golang-web)
   #:use-module (gnu packages golang-xyz)
   #:use-module (gnu packages guile)
   #:use-module (gnu packages haskell-xyz)
@@ -761,7 +762,7 @@ from a mounted file system.")
   ;; completions by running a native bcachefs binary at build time.
   (package
     (name "bcachefs-tools-minimal")
-    (version "1.35.1")
+    (version "1.37.4")
     (source
      (origin
        (method git-fetch)
@@ -770,7 +771,7 @@ from a mounted file system.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1jn7fqlvhr0iazfx31wamvmf3qmgrzlf9ghvz8qazk8b6ipv77fn"))))
+        (base32 "17041jphzbg0ppxlc1acr3d73zyn02spjvi5my30wak8xh9n6nan"))))
     (build-system cargo-build-system)
     (arguments
      (list
@@ -968,20 +969,13 @@ minimal bcachefs-tools package.  It is meant to be used in initrds.")
 (define-public bcachefs-linux-module
   (package
     (name "bcachefs-linux-module")
-    (version "1.35.1")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://evilpiepirate.org/git/bcachefs-tools.git")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1jn7fqlvhr0iazfx31wamvmf3qmgrzlf9ghvz8qazk8b6ipv77fn"))))
+    (version (package-version bcachefs-tools-minimal))
+    (source (package-source bcachefs-tools-minimal))
     (build-system linux-module-build-system)
     (arguments
      (list
-      #:tests? #f ;no 'check' target
+      #:make-flags #~(list "BCACHEFS_DKMS=1")
+      #:tests? #f                       ;no 'check' target
       #:source-directory "build/src/fs/bcachefs"
       #:phases
       #~(modify-phases %standard-phases
@@ -990,18 +984,14 @@ minimal bcachefs-tools package.  It is meant to be used in initrds.")
               (with-output-to-file ".version"
                 (lambda ()
                   (display #$version)))))
-          (add-after 'unpack 'patch-source
-            (lambda _
-              (substitute* "Makefile"
-                ;; Remove unnecessary dependencies
-                (("^.*PKG_CONFIG.*$")
-                 ""))))
-          (add-before 'configure 'prepare-build-dir
-            (lambda _
-              (invoke "make" "install_dkms"
-                      (string-append "DESTDIR="
-                                     (getcwd) "/") "DKMSDIR=build/"))))))
-    (home-page (package-home-page bcachefs-tools-minimal/static))
+          (add-before 'configure 'prepare-build-directory
+            (lambda* (#:key make-flags #:allow-other-keys)
+              (apply invoke "make" "install_dkms"
+                     (string-append "DESTDIR="
+                                    (getcwd) "/")
+                     "DKMSDIR=build/"
+                     make-flags))))))
+    (home-page (package-home-page bcachefs-tools-minimal))
     (synopsis "Bcachefs Linux kernel module")
     (description
      "This package provides the Linux kernel module for Bcachefs.
@@ -2140,10 +2130,79 @@ the XDG directory specification from @file{~/.@var{name}} to
 @file{~/.config/@var{name}}.")
       (license license:gpl2+))))
 
+(define-public s5cmd
+  (package
+    (name "s5cmd")
+    (version "2.3.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/peak/s5cmd")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1y1bwma6f68j00jfdjxvw5flp9l4cdys7dgkrr0yvfz68lk9a17v"))
+       (snippet
+        #~(begin (use-modules (guix build utils))
+                 (delete-file-recursively "vendor")))))
+    (build-system go-build-system)
+    (arguments
+     (list
+      #:install-source? #f
+      #:import-path "github.com/peak/s5cmd/v2"
+      #:test-flags
+      #~(list "-vet=off"
+              ;; cp_test.go:74: assertion failed: text/plain; charset=utf-8
+              ;; (tc.expectedContentType string) != text/html; charset=utf-8
+              ;; (string)
+              "-skip" "TestGuessContentType")
+      #:test-subdirs
+      ;; build flag -mod=vendor only valid when using modules
+      ;; /<...>/peak/s5cmd/v2/e2e/util_test.go:417 +0x3b9
+      ;; /<...>/peak/s5cmd/v2/e2e/main_test.go:12 +0x65
+      #~(list "command/..."
+              "orderedwriter/..."
+              "progressbar/..."
+              "storage/..."
+              "storage/url/..."
+              "strutil/...")
+      #:phases
+      #~(modify-phases %standard-phases
+	  (add-after 'install 'rename-binaries
+	    (lambda _
+	      (rename-file
+	       (string-append #$output "/bin/v2")
+	       (string-append #$output "/bin/s5cmd")))))))
+    (native-inputs
+     (list go-github-com-aws-aws-sdk-go
+           go-github-com-cheggaaa-pb-v3
+           go-github-com-google-go-cmp
+           go-github-com-hashicorp-go-multierror
+           go-github-com-iancoleman-strcase
+           go-github-com-igungor-gofakes3
+           go-github-com-karrick-godirwalk
+           go-github-com-kballard-go-shellquote
+           go-github-com-lanrat-extsort-1.0.2
+           go-github-com-termie-go-shutil
+           go-github-com-urfave-cli-v2
+           go-go-uber-org-mock
+           go-gotest-tools-v3
+           go-honnef-co-go-tools
+           go-mvdan-cc-unparam))
+    (home-page "https://github.com/peak/s5cmd")
+    (synopsis "Parallel S3 and local filesystem execution tool")
+    (description
+     "@code{s5cmd} is a fast S3 and local filesystem execution tool.  It comes
+with support for a multitude of operations including tab completion and
+wildcard support for files, which can be handy for object storage workflow
+while working with large number of files.")
+    (license license:expat)))
+
 (define-public squashfuse
   (package
     (name "squashfuse")
-    (version "0.1.105")
+    (version "0.6.1")
     (source
      (origin
        (method git-fetch)
@@ -2152,7 +2211,7 @@ the XDG directory specification from @file{~/.@var{name}} to
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "03aw8pw8694jyrzpnbry05rk9718sqw66kiyq878bbb679gl7224"))))
+        (base32 "16ds2xlk6hb5cggi6di8s0aalir3mrx7rk24rw5daad1xw4dbq0y"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -2190,7 +2249,8 @@ memory-efficient.")
                  (install-file "fuseprivate.h"
                                (string-append #$output
                                               "/include/squashfuse/")))))))))
-    (inputs (list fuse-for-appimage
+    (inputs (list `(,fuse "out")
+                  `(,fuse "static")
                   `(,zstd "lib")
                   `(,zstd "static")
                   `(,zlib "out")

gnu/packages/finance.scm

@@ -766,7 +766,7 @@ require Coincurve.")
 (define-public electrum
   (package
     (name "electrum")
-    (version "4.7.1")
+    (version "4.7.2")
     (source
      (origin
        (method git-fetch)
@@ -775,7 +775,7 @@ require Coincurve.")
               (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "171jbap3khzwkyxg730sasfj01qiip396sgyiwr1i6yq5fxd23pi"))))
+        (base32 "05y3w9jhpfxd7frzlilqvsfggrgfzcml2spc2qb5xx9j4q62hnmx"))))
     (build-system pyproject-build-system)
     (arguments
      (list

gnu/packages/fltk.scm

@@ -52,6 +52,7 @@
       (uri (git-reference
               (url "https://github.com/fltk/fltk")
               (commit (string-append "release-" version))))
+      (file-name (git-file-name name version))
       (sha256
        (base32 "0pnifyhhvcqfjd6iaa4m14kvfyqhjjdw0aqbcizcdhhqrl6q4pjg"))))
    (build-system gnu-build-system)

gnu/packages/fortran-xyz.scm

@@ -28,7 +28,8 @@
   #:use-module (gnu packages libffi)
   #:use-module (gnu packages maths)
   #:use-module (gnu packages pkg-config)
-  #:use-module (gnu packages python))
+  #:use-module (gnu packages python)
+  #:use-module (gnu packages python-build))
 
 ;;; Please: Try to add new module packages in alphabetic order.
 ;;;
@@ -144,7 +145,7 @@ a.s.o.
 (define-public fortran-mctc-lib
   (package
     (name "fortran-mctc-lib")
-    (version "0.3.2")
+    (version "0.5.1")
     (source
      (origin
        (method git-fetch)
@@ -154,7 +155,7 @@ a.s.o.
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "1gabdxllx2pcw1mbv4gw9zpn6817ikz9ql8xs9w86wswd6f0m5kl"))))
+         "1wp8apv0psl2hkhlrd5pgnhbxk8zpxa0ijkhcnb09klbxcsi8p5f"))))
     (build-system meson-build-system)
     (arguments
      (list
@@ -243,7 +244,7 @@ calculate partial charges used in the DFT-D4 model.")
 (define-public fortran-simple-dftd3
   (package
     (name "fortran-simple-dftd3")
-    (version "1.2.1")
+    (version "1.3.0")
     (source
      (origin
        (method git-fetch)
@@ -252,7 +253,7 @@ calculate partial charges used in the DFT-D4 model.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0aygmnax3vwz2x3ad7syksfjca4zc85nyslsibs0wg8wqfsmr33k"))))
+        (base32 "1602pwmxa8qjllgj7k9hq2bm4s838f6qzr7mpc0rbh28gm00c1fw"))))
     (build-system meson-build-system)
     (arguments
      (list
@@ -265,7 +266,8 @@ calculate partial charges used in the DFT-D4 model.")
      (list gfortran
            pkg-config
            python-minimal
-           python-cffi))
+           python-cffi
+           python-setuptools))
     (inputs
      (list fortran-mctc-lib
            fortran-mstore

gnu/packages/freedesktop.scm

@@ -1150,6 +1150,60 @@ GNOME Shell.  The @command{localectl} command-line tool allows you to interact
 with localed.  This package is extracted from the broader systemd package.")
     (license license:lgpl2.1+)))
 
+(define-public gardenhostd
+  (package
+   (name "gardenhostd")
+   (version "1.1")
+   (source (origin
+            (method git-fetch)
+            (uri (git-reference
+                  (url "https://codeberg.org/axtlos/gardenhostd.git")
+                  (commit (string-append "v" version))))
+            (file-name (git-file-name name version))
+            (sha256
+             (base32
+              "1q0pdh0imc2ggb26cddl62hx6fmz6z4hqj2352a4k9wxyn5kfiam"))))
+   (build-system meson-build-system)
+   (arguments
+    (list
+     #:imported-modules `(,@%meson-build-system-modules
+                          ,@%pyproject-build-system-modules)
+     #:modules '(((guix build pyproject-build-system) #:prefix pyproject:)
+                 (guix build meson-build-system)
+                 (guix build utils))
+     #:phases
+     #~(modify-phases %standard-phases
+         (add-after 'install 'remove-extra-files
+           (lambda _
+             (with-directory-excursion #$output
+               (delete-file-recursively "etc/init.d")
+               (rmdir "etc"))))
+         ;; See <https://codeberg.org/guix/guix/issues/7579>.
+         (add-after 'install 'wrap-search-paths
+           (lambda _
+             (wrap-program (string-append #$output "/libexec/gardenhostd")
+               `("GUIX_PYTHONPATH" prefix
+                 ,(map
+                   (lambda (package)
+                     (string-append
+                      package "/lib/python"
+                      (pyproject:python-version #$(this-package-input "python"))
+                      "/site-packages"))
+                   ;; Avoids references to meson’s libraries.
+                   (list #$(this-package-input "python")
+                         #$(this-package-input "python-pygobject"))))))))))
+   (inputs
+    (list bash-minimal
+          python
+          python-pygobject))
+   (home-page "https://codeberg.org/axtlos/gardenhostd")
+   (synopsis "Minimal Python implementation of systemd-hostnamed")
+   (description "This package is a partial implementation of the
+systemd-hostnamed daemon.  It provides the @code{org.freedesktop.hostname1}
+D-Bus interface, which helps applications like GNOME Settings retrieve and
+modify the system’s hostname, as well as set a pretty hostname for display.")
+   (license license:gpl3+)))
+
 (define-public packagekit
   (package
     (name "packagekit")
@@ -2862,7 +2916,7 @@ to the C library @code{uchardet} to increase performance.")
 (define-public udiskie
   (package
     (name "udiskie")
-    (version "2.6.1")
+    (version "2.6.2")
     (source
      (origin
        (method git-fetch)
@@ -2871,7 +2925,7 @@ to the C library @code{uchardet} to increase performance.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0ngr8sdzd32mxamzfh82ar8m40z52lx91339b7dq3in0cr5r1ynp"))))
+        (base32 "0zc23yf2sw1m21xkfbpfjzbp7xykqjwq56fr2nxzlc02n7g6iqgk"))))
     (build-system pyproject-build-system)
     (arguments
      (list

gnu/packages/games.scm

@@ -30,7 +30,7 @@
 ;;; Copyright © 2017, 2019, 2020 Marius Bakke <mbakke@fastmail.com>
 ;;; Copyright © 2017, 2018 Rutger Helling <rhelling@mykolab.com>
 ;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
-;;; Copyright © 2017-2025 Nicolas Goaziou <mail@nicolasgoaziou.fr>
+;;; Copyright © 2017-2026 Nicolas Goaziou <mail@nicolasgoaziou.fr>
 ;;; Copyright © 2018 okapi <okapi@firemail.cc>
 ;;; Copyright © 2018 Tim Gesthuizen <tim.gesthuizen@yahoo.de>
 ;;; Copyright © 2018 Madalin Ionel-Patrascu <madalinionel.patrascu@mdc-berlin.de>
@@ -3964,7 +3964,7 @@ that beneath its ruins lay buried an ancient evil.")
 (define-public angband
   (package
     (name "angband")
-    (version "4.2.5")
+    (version "4.2.6")
     (source
      (origin
        (method git-fetch)
@@ -3973,7 +3973,7 @@ that beneath its ruins lay buried an ancient evil.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0kg6npbfy42mhggsqvs04khc8198i980z52xm59pws29698qazaw"))
+        (base32 "0hgzdvlh0j42w4q9kch9xvhnbvcrypac01xhpksw35gj9my887cp"))
        (modules '((guix build utils)))
        (snippet
         ;; So, some of the sounds/graphics/tilesets are under different
@@ -3989,12 +3989,55 @@ that beneath its ruins lay buried an ancient evil.")
            (substitute* "lib/Makefile"
              ;; And don't try to invoke makefiles in the directories we removed.
              (("gamedata customize help screens fonts tiles sounds icons user")
-              "gamedata customize help screens user"))))))
+              "gamedata customize help screens user"))
+           ;; Remove nonfree .dll files too.
+           (delete-file-recursively "src/win")))))
     (build-system gnu-build-system)
     (arguments
-     `(#:tests? #f                      ; no check target
-       #:configure-flags (list (string-append "--bindir=" %output "/bin"))))
-    (native-inputs (list autoconf automake))
+     `(#:configure-flags (list (string-append "--bindir=" %output "/bin"))
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'build 'fix-infinite-loop-on-sighup
+           ;; XXX Release 4.2.6 has a major bug where sending the process a
+           ;; SIGHUP when closing the terminal causes it to infinite loop
+           ;; waiting for input: https://github.com/angband/angband/issues/6558
+           ;; Reevaluate for future versions.
+           (lambda _
+             (substitute* "src/ui-signals.c"
+               (("(SIGHUP, )SIG_IGN" _ first)
+                (string-append first "handle_signal_abort")))))
+         (add-before 'check 'skip-failing-tests
+           (lambda _
+             (let ((to-skip '(;; some of these may be fixable, but most try to
+                              ;; create a directory in the user's home directory.
+                              ;; Rather than reading environment variables, they
+                              ;; lookup the username using getpwnam(3) and manually
+                              ;; construct the string.
+                              ;; Generic "Suite died":
+                              "game/basic"
+                              "game/mage"
+                              ;; "Cannot create '//.angband/Angband'":
+                              "effects/chain"
+                              "effects/destruction"
+                              "effects/earthquake"
+                              "object/info"
+                              "object/slays"
+                              "player/calc-inventory"
+                              "player/combine-pack"
+                              "player/digging"
+                              "player/inven-carry-num"
+                              "player/inven-wield"
+                              "player/timed"
+                              ;; This file likes to read /etc/passwd
+                              "z-file/path-normalize")))
+               (substitute* "src/tests/Makefile"
+                 (("include \\$\\(SUITES\\)" all)
+                  (string-append all "\nTESTPROGS := $(filter-out "
+                                 (string-join to-skip " ")
+                                 ", $(TESTPROGS))")))))))))
+    (native-inputs (list autoconf
+                         automake
+                         perl)) ;for tests
     (inputs (list ncurses))
     (home-page "https://rephial.org/")
     (synopsis "Dungeon exploration roguelike")
@@ -4905,7 +4948,7 @@ Protocol).")
 (define-public extremetuxracer
   (package
     (name "extremetuxracer")
-    (version "0.8.2")
+    (version "0.8.4")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -4913,7 +4956,7 @@ Protocol).")
                     version "/etr-" version ".tar.xz"))
               (sha256
                (base32
-                "0knd22lzhzqih1w92y6m7yxha376c6ydl22wy4xm6jg2x5jlk1qw"))))
+                "1rbk8zqfzzk90znf3f5lqqa12j0n6pm2qgwzabzmlnkm1k68acps"))))
     (build-system gnu-build-system)
     (native-inputs
      (list pkg-config))
@@ -8148,7 +8191,7 @@ fish.  The whole game is accompanied by quiet, comforting music.")
 (define-public crawl
   (package
     (name "crawl")
-    (version "0.34.0")
+    (version "0.34.1")
     (source
      (origin
        (method git-fetch)
@@ -8157,7 +8200,7 @@ fish.  The whole game is accompanied by quiet, comforting music.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "16fsvrzcndrplw8zcn6nh8459x8zl5xdnf9r9hzh4ll2a4w9dkcr"))
+        (base32 "09x4n4w3rw8sldwprb03yg1igwh4m09iw00g2iq30466jryys6bv"))
        (patches (search-patches "crawl-upgrade-saves.patch"))))
     (build-system gnu-build-system)
     (inputs
@@ -11312,46 +11355,33 @@ to remap axis and buttons and a way to calibrate joysticks.")
 (define-public jumpnbump
   (package
     (name "jumpnbump")
-    (version "1.61")
+    (version "1.70")
     (source (origin
               (method git-fetch)
               (uri (git-reference
-                    (url "https://gitlab.com/LibreGames/jumpnbump.git")
-                    (commit version)))
+                     (url "https://gitlab.com/LibreGames/jumpnbump.git")
+                     (commit version)))
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "12lwl5sl5n009nb83r8l4lakb9286csqdf1ynpmwwydy17giqsdp"))))
+                "1irpssijxrfrjm023v642dl3aw4ldlv95fh073jlpdpl1mwqz71a"))))
     (build-system gnu-build-system)
     (arguments
-     `(#:make-flags
-       (list "CC=gcc"
-             (string-append "PREFIX=" (assoc-ref %outputs "out")))
-       #:tests? #f                      ;no test
-       #:phases
-       (modify-phases %standard-phases
-         ;; There is no configure script
-         (replace 'configure
-           (lambda _
-             (substitute* "Makefile"
-               (("-funroll-loops")
-                "-funroll-loops -fcommon")
-               (("SDL_CFLAGS =")
-                "SDL_CFLAGS = -fcommon"))))
-         (add-after 'unpack 'fix-sdl-path
-           ;; XXX: For some reason, `sdl2-config' reports stand-alone SDL
-           ;; directory, not SDL-union provided as an input to the package.
-           ;; We force the latter with "--prefix=" option.
-           (lambda* (#:key inputs #:allow-other-keys)
-             (substitute* "Makefile"
-               (("sdl2-config" command)
-                (string-append command " --prefix=" (assoc-ref inputs "sdl")))))))))
+     (list
+      #:make-flags
+      #~(list (string-append "CC=" #$(cc-for-target))
+              (string-append "PREFIX=" #$output)
+              "SYSINSTALL=1")
+      #:tests? #f                       ;no test
+      #:phases
+      #~(modify-phases %standard-phases
+          (delete 'configure))))        ;no configure script
     (inputs
-     `(("bzip2" ,bzip2)
-       ("sdl" ,(sdl-union (list sdl2 sdl2-mixer sdl2-net)))
-       ("zlib" ,zlib)))
+     (list bzip2
+           (sdl-union (list sdl2 sdl2-mixer sdl2-net))
+           zlib))
     (native-inputs
-     `(("gettext" ,gettext-minimal)))   ;for msgfmt
+     (list gettext-minimal))            ;for msgfmt
     (home-page "https://gitlab.com/LibreGames/jumpnbump")
     (synopsis "Multiplayer platform game with bunnies")
     (description "You, as a bunny, have to jump on your opponents to make them
@@ -11487,7 +11517,7 @@ player adaptability for character progression.")
 (define-public li-ri
   (package
     (name "li-ri")
-    (version "3.1.5")
+    (version "3.1.6")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -11496,7 +11526,7 @@ player adaptability for character progression.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1fd5hl9qhgvyix51la8sl34jzk4mcin8sai05gidy2r2grb1dy4s"))))
+                "09r6l0sbxp3q750kpbrx513yrafmg7a2769j4wgx812lsk92n3hg"))))
     (build-system cmake-build-system)
     (arguments
      (list #:tests? #false              ;no tests

gnu/packages/gimp.scm

@@ -398,7 +398,8 @@ that is extensible via a plugin system.")
                         ;; environment, as it could cause Gimp to crash (see
                         ;; bug#77921).
                         `("GI_TYPELIB_PATH" prefix
-                          (,(getenv "GI_TYPELIB_PATH")))
+                          (,(getenv "GI_TYPELIB_PATH")
+                           ,(string-append #$output "/lib/girepository-1.0")))
                         `("GUIX_PYTHONPATH" prefix
                           (,(getenv "GUIX_PYTHONPATH")))
                         `("GDK_PIXBUF_MODULE_FILE" =

gnu/packages/gnome-circle.scm

@@ -524,7 +524,8 @@ like automatic language detection, text-to-speech and clipboard buttons.")
                             #:vendor-dir "vendor"
                             #:cargo-target #$(cargo-triplet)
                             args))
-                   '(unpack-rust-crates
+                   '(prepare-rust-crates
+                     unpack-rust-crates
                      configure
                      check-for-pregenerated-files
                      patch-cargo-checksums))))))))
@@ -595,7 +596,8 @@ Transmission, and can be used to control remote Transmission instances.")
                         #:vendor-dir "vendor"
                         #:cargo-target #$(cargo-triplet)
                         args))
-               '(unpack-rust-crates
+               '(prepare-rust-crates
+                 unpack-rust-crates
                  configure
                  check-for-pregenerated-files
                  patch-cargo-checksums)))))))

gnu/packages/gnome.scm

@@ -564,6 +564,7 @@ It is written in C using GObject and libsoup.")
     (arguments
      `(#:configure-flags
        (list
+        "CFLAGS=-g -O2 -Wno-error=incompatible-pointer-types"
         "--disable-static"
         "--enable-gtk-doc"
         (string-append "--with-html-dir="

gnu/packages/gnupg.scm

@@ -92,6 +92,7 @@
   #:use-module (guix build-system perl)
   #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system qt)
   #:use-module (ice-9 match)
   #:use-module (guix build-system meson)
   #:use-module (srfi srfi-1))
@@ -934,7 +935,22 @@ software.")))
     (inherit pinentry-tty)
     (name "pinentry-qt")
     (arguments
-     `(#:configure-flags '("--enable-fallback-curses")))
+     (list #:configure-flags
+           #~(list "--enable-fallback-curses")
+           #:imported-modules
+           (append %default-gnu-imported-modules
+                   %qt-build-system-modules)
+           #:modules
+           '((guix build utils)
+             (guix build gnu-build-system)
+             ((guix build qt-build-system) #:prefix qt:))
+           #:phases
+           #~(modify-phases %standard-phases
+               (add-after 'install 'qt-wrap
+                 (lambda args
+                   (apply (assoc-ref qt:%standard-phases 'qt-wrap)
+                          #:qtbase #$(this-package-input "qtbase")
+                          args))))))
     (inputs
      (modify-inputs inputs
        (prepend qtbase qtwayland)))

gnu/packages/gnustep.scm

@@ -117,7 +117,7 @@ GCC runtime.
 (define-public windowmaker
   (package
     (name "windowmaker")
-    (version "0.95.9")
+    (version "0.96.0")
     (synopsis "NeXTSTEP-like window manager")
     (source (origin
               (method url-fetch)
@@ -126,60 +126,58 @@ GCC runtime.
                     "wmaker-" version "/WindowMaker-" version ".tar.gz"))
               (sha256
                (base32
-                "055pqvlkhipyjn7m6bb3fs4zz9rd1ynzl0mmwbhp05ihc3zmh8zj"))))
+                "0vbgjbqnv2gcpimnrh2fc383gxcdfhgz1j3f2lfa4jng4fx31qag"))))
     (build-system gnu-build-system)
     (arguments
-     `(#:modules ((guix build gnu-build-system)
+     (list
+      #:modules '((guix build gnu-build-system)
                   (guix build utils)
                   (ice-9 match))
-       #:phases
-       (modify-phases %standard-phases
-         (add-before 'configure 'pre-configure
-           (lambda* (#:key outputs #:allow-other-keys)
-             ;; 'wmaker' wants to invoke 'wmaker.inst' the first time,
-             ;; and the 'wmsetbg', so make sure it uses the right ones.
-             ;; We can't use a wrapper here because that would pollute
-             ;; $PATH in the whole session.
-             (let* ((out (assoc-ref outputs "out"))
-                    (bin (string-append out "/bin")))
-               (substitute* "src/main.c"
-                 (("\"wmaker\\.inst")
-                  (string-append "\"" bin "/wmaker.inst")))
-               (substitute* '("src/defaults.c" "WPrefs.app/Menu.c")
-                 (("\"wmsetbg")
-                  (string-append "\"" bin "/wmsetbg")))
-               ;; Add enough cells to the command character array to
-               ;; allow passing our large path to the wmsetbg binary.
-               ;; The path to wmsetbg in Guix requires 67 extra characters.
-               (substitute* "src/defaults.c"
-                 (("len = strlen\\(text\\) \\+ 40;")
-                  (string-append "len = strlen(text) + 107;"))))))
-         (add-after 'install 'install-xsession
-           (lambda* (#:key outputs #:allow-other-keys)
-             (let* ((out (assoc-ref outputs "out"))
-                    (xsessions (string-append out "/share/xsessions")))
-               (mkdir-p xsessions)
-               (call-with-output-file
-                   (string-append xsessions "/windowmaker.desktop")
-                 (lambda (port)
-                   (format port "~
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'configure 'pre-configure
+            (lambda _
+              ;; 'wmaker' wants to invoke 'wmaker.inst' the first time,
+              ;; and the 'wmsetbg', so make sure it uses the right ones.
+              ;; We can't use a wrapper here because that would pollute
+              ;; $PATH in the whole session.
+              (let* ((bin (string-append #$output "/bin")))
+                (substitute* "src/main.c"
+                  (("\"wmaker\\.inst")
+                   (string-append "\"" bin "/wmaker.inst")))
+                (substitute* '("src/defaults.c" "WPrefs.app/Menu.c")
+                  (("\"wmsetbg")
+                   (string-append "\"" bin "/wmsetbg")))
+                ;; Add enough cells to the command character array to
+                ;; allow passing our large path to the wmsetbg binary.
+                ;; The path to wmsetbg in Guix requires 67 extra characters.
+                (substitute* "src/defaults.c"
+                  (("len = strlen\\(text\\) \\+ 40;")
+                   (string-append "len = strlen(text) + 107;"))))))
+          (add-after 'install 'install-xsession
+            (lambda _
+              (let* ((xsessions (string-append #$output "/share/xsessions")))
+                (mkdir-p xsessions)
+                (call-with-output-file
+                    (string-append xsessions "/windowmaker.desktop")
+                  (lambda (port)
+                    (format port "~
                     [Desktop Entry]~@
                     Name=Window Maker~@
                     Comment=~a~@
                     Exec=~a/bin/wmaker~@
                     Type=Application~%"
-                           (string-map (match-lambda
-                                         (#\newline #\space)
-                                         (chr chr))
-                                       ,synopsis) out))))))
-         (add-after 'install-xsession 'wrap
-           (lambda* (#:key outputs #:allow-other-keys)
-             (let* ((out (assoc-ref outputs "out"))
-                    (bin (string-append out "/bin")))
-               ;; In turn, 'wmaker.inst' wants to invoke 'wmmenugen'
-               ;; etc., so make sure everything is in $PATH.
-               (wrap-program (string-append bin "/wmaker.inst")
-                 `("PATH" ":" prefix (,bin)))))))))
+                            (string-map (match-lambda
+                                          (#\newline #\space)
+                                          (chr chr))
+                                        #$synopsis) #$output))))))
+          (add-after 'install-xsession 'wrap
+            (lambda _
+              (let* ((bin (string-append #$output "/bin")))
+                ;; In turn, 'wmaker.inst' wants to invoke 'wmmenugen'
+                ;; etc., so make sure everything is in $PATH.
+                (wrap-program (string-append bin "/wmaker.inst")
+                  `("PATH" ":" prefix (,bin)))))))))
     (inputs
      (list bash-minimal                 ;for wrap-program
            fontconfig

gnu/packages/gnuzilla.scm

@@ -604,6 +604,7 @@ in the case of Firefox, it is browser/locales/all-locales."
     "zh-CN"
     "zh-TW"))
 
+;;; Please keep these versions in sync with icedove.
 (define %icecat-base-version "140.9.0")
 (define %icecat-version (string-append %icecat-base-version "-gnu1"))
 (define %icecat-build-id "20260324000000") ;must be of the form YYYYMMDDhhmmss
@@ -1248,24 +1249,29 @@ testing.")
        (cpe-name . "firefox_esr")
        (cpe-version . ,(first (string-split version #\-)))))))
 
-(define %icedove-build-id "20260224000000") ;must be of the form YYYYMMDDhhmmss
+(define %icedove-build-id "20260324000000") ;must be of the form YYYYMMDDhhmmss
 ;;; See <https://product-details.mozilla.org/1.0/thunderbird_versions.json>
 ;;; for the source of truth regarding Thunderbird releases.
-(define %icedove-version "140.8.0")
+;;; Please keep these version numbers in sync with icecat.
+;;; Please also update thunderbird-comm-source and thunderbird-comm-l10n to
+;;; the icedove version.
+(define %icedove-version "140.9.0")
 
 ;; Provides the "comm" folder which is inserted into the icecat source.
 ;; Avoids the duplication of Icecat's source tarball.  Pick the changeset that
 ;; matches the most recent tag of the form 'THUNDERBIRD_140_2_0esr_RELEASE'.
+;; Please also update the commit of thunderbird-comm-l10n to match the
+;; changeset used by thunderbird-comm-source.
 (define thunderbird-comm-source
   (origin
     (method hg-fetch)
     (uri (hg-reference
           (url "https://hg.mozilla.org/releases/comm-esr140")
-          (changeset "aa377fbf351e6b10b053e6afa421755c82d5fcf7")))
+          (changeset "8be9f2d3072c225a1e5f153745a18984c2babf8f")))
     (file-name (string-append "thunderbird-" %icedove-version "-checkout"))
     (sha256
      (base32
-      "0595jg1qbwclzi9qssljqkisrm2dn99rzxzaz2mcfi7b1kvbfaki"))
+      "04j35957x03m5x7mhh8zxa86mwjy0is2vb614sr4inkvvz4rs2hg"))
     (patches (search-patches "icedove-observer-fix.patch"))))
 
 ;;; To regenerate, see the `format-locales' helper defined above.
@@ -1342,7 +1348,8 @@ testing.")
   ;; The commit to use can be found in the mail/locales/l10n-changesets.json
   ;; file in Thunderbird's source (e.g.:
   ;; <https://hg-edge.mozilla.org/releases/comm-esr140/file/efb07defaa2d56105675dc1d936af581ebfd8ffa/mail/locales/l10n-changesets.json>)
-  (let* ((commit "b6fd3d6c75ba35d91fe131a654df76ca86f35ac5")
+  ;; where the hash in the URL is the changeset from thunderbird-comm-source.
+  (let* ((commit "7c86eab97e77f00ca7ed8f224d38338a3ed46693")
          (revision "0")
          (version (git-version %icedove-version revision commit)))
     (origin
@@ -1353,7 +1360,7 @@ testing.")
       (file-name (git-file-name "thunderbird-l10n" version))
       (sha256
        (base32
-        "0n4df6kv70a6mxxsqwc83nhj8vl7acv9bcbf07nkcsjjxh3szvqc")))))
+        "1navma2gwcgbbiwcwrc5lrx2jk3qmrnrc6i8pvhb8156pz4cg5nd")))))
 
 (define icedove-source
   (let ((name (string-append "icedove-" %icedove-version)))

gnu/packages/golang-build.scm

@@ -181,7 +181,7 @@ collections like from @code{container/tree}.
      "This package provides a library for calling C functions from Go without
 Cgo.
 
-Featues:
+Features:
 @itemize
 @item build for other platforms easily without a C compiler
 @item efficiently cache entirely Go builds
@@ -1042,7 +1042,7 @@ compile does not support generics.")
      (list
       #:skip-build? #t
       #:import-path "golang.org/x/mod"
-      ;; Test tries to acces:
+      ;; Test tries to access:
       ;; "http://ct.googleapis.com/logs/argon2020/ct/v1/get-sth": dial tcp:
       ;; lookup ct.googleapis.com
       #:test-flags #~(list "-skip" "TestCertificateTransparency")))
@@ -1712,7 +1712,7 @@ values.")
     (license license:bsd-3)))
 
 (define-public go-google-golang-org-genproto-googleapis-rpc
-  ;; No release or verion tags, use the latest commit.
+  ;; No release or version tags, use the latest commit.
   (let ((commit "49b9836ed3ff1e1dd329d17e442987447e931c7d")
         (revision "1"))
     (package

gnu/packages/golang-check.scm

@@ -127,7 +127,7 @@ value and call @code{t.Fatal()} if the assertion fails.")
     (description
      "Correct is a collection of assertion libraries for Golang, intended to be
 used together.  It tries not to strictly enforce that, though - most of
-correct should be customizeable either by changing some options or by using
+correct should be customizable either by changing some options or by using
 only some sub-packages of correct.")
     (license license:mpl2.0)))
 
@@ -1195,7 +1195,7 @@ when comparing complex types like structures and maps.")
     (home-page "https://github.com/go-testfixtures/testfixtures")
     (synopsis "Ruby on Rails like test fixtures for Go")
     (description
-     "Ths package mimics the
+     "This package mimics the
 @url{http://guides.rubyonrails.org/testing.html#the-test-database, Ruby on
 Rails' way} of writing tests for database applications, where sample data is
 kept in fixtures files.  Before the execution of every test, the test database
@@ -1462,7 +1462,7 @@ Node @code{nock} library, it has features like:
 @item Supports map and filters to handle mocks easily
 @item Wide compatible HTTP interceptor using @code{http.RoundTripper} interface
 @item Works with any @code{net/http} compatible client, such as @code{gentleman}
-@item Network timeout/cancelation delay simulation
+@item Network timeout/cancellation delay simulation
 @item Extensible and hackable API
 @end itemize")
     (license license:expat)))
@@ -1871,7 +1871,7 @@ differently.")
               (with-directory-excursion (string-append "src/" import-path)
                 (delete-file-recursively "example"))))
           (add-after 'unpack 'preserve-PATH-from-environment
-            ;; Unlike FHS systems, Guix needs to look its commands fom PATH.
+            ;; Unlike FHS systems, Guix needs to look for its commands in PATH.
             ;; Expose it by default in the test environments.
             (lambda* (#:key tests? import-path #:allow-other-keys)
               (with-directory-excursion (string-append "src/" import-path)
@@ -2254,6 +2254,45 @@ can be used in test code as a mock of the interface.")
 Perl's @url{https://metacpan.org/pod/Test::Deep, Test::Deep perl}.")
     (license license:bsd-2)))
 
+(define-public go-github-com-maxbrunsfeld-counterfeiter-v6
+  (package
+    (name "go-github-com-maxbrunsfeld-counterfeiter")
+    (version "6.12.2")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/maxbrunsfeld/counterfeiter")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0c4a8gcm3l992vydldcfsvb2jk4spnmxsk2i4klqh4fpagbpa069"))))
+    (build-system go-build-system)
+    (arguments
+     (list
+      #:import-path "github.com/maxbrunsfeld/counterfeiter/v6"
+      #:test-flags
+      #~(list "-skip" "TestIntegration")
+      #:test-subdirs
+      #~(list "." "arguments" "command" "generator" "integration")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'build 'go-generate
+            (lambda* (#:key import-path #:allow-other-keys)
+              (with-directory-excursion (string-append "src/" import-path)
+                (invoke "go" "generate" "-v" "-n" "./...")))))))
+    (native-inputs
+     (list go-github-com-onsi-gomega
+           go-github-com-sclevine-spec
+           go-golang-org-x-text
+           go-golang-org-x-tools))
+    (home-page "https://github.com/maxbrunsfeld/counterfeiter")
+    (synopsis "Generate self-contained, type-safe test doubles in Go")
+    (description
+     "This package provides fake implementations of the object's
+collaborators.")
+    (license license:expat)))
+
 (define-public go-github-com-mfridman-tparse
   (package
     (name "go-github-com-mfridman-tparse")
@@ -2333,7 +2372,7 @@ output.")
     (home-page "https://github.com/modocache/gover")
     (synopsis "Integration with coveralls.io for *.coverprofile files")
     (description
-     "This package inplements a functionality to collect all
+     "This package implements a functionality to collect all
 @code{.coverprofile} files rooted in the project and concatenante them into a
 single file ready for https://coveralls.io/.")
     (license license:asl2.0)))
@@ -2703,6 +2742,31 @@ GIT_TRACE mechanism.")
      "This package provides tools for detecting deadlocks at run-time in Go.")
     (license license:asl2.0)))
 
+(define-public go-github-com-sclevine-spec
+  (package
+    (name "go-github-com-sclevine-spec")
+    (version "1.4.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/sclevine/spec")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0y3rqb7dd51qnw5ns7w5sy93879ybnlg6gwslbv5mkfnrk0gl7na"))))
+    (build-system go-build-system)
+    (arguments
+     (list
+      #:import-path "github.com/sclevine/spec"))
+    (home-page "https://github.com/sclevine/spec")
+    (synopsis "BDD-style test organizer for Go")
+    (description
+     "Spec is a simple BDD test organizer for Go.  It minimally extends the
+standard library @code{testing} package by facilitating easy organization of
+Go 1.7+ @url{https://blog.golang.org/subtests, subtests}.")
+    (license license:asl2.0)))
+
 (define-public go-github-com-shabbyrobe-gocovmerge
   (package
     (name "go-github-com-shabbyrobe-gocovmerge")
@@ -3342,6 +3406,33 @@ and restore them afterwards.")
 @url{http://www.freebsd.org/cgi/man.cgi?query=fail,failpoints} for Golang.")
     (license license:asl2.0)))
 
+(define-public go-go-shabbyrobe-org-gocovmerge
+  (package
+    (name "go-go-shabbyrobe-org-gocovmerge")
+    (version "0.0.0-20230507111327-fa4f82cfbf4d")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://git.sr.ht/~shabbyrobe/gocovmerge")
+              (commit (go-version->git-ref version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0sbr6i1m5hjbnlfad8cl8w30949r02c66l85hcmyyd9ka30mqr23"))))
+    (build-system go-build-system)
+    (arguments
+     (list
+      #:import-path "go.shabbyrobe.org/gocovmerge"))
+    (propagated-inputs
+     (list go-golang-org-x-tools))
+    (home-page "https://go.shabbyrobe.org/gocovmerge")
+    (synopsis "gocovmerge")
+    (description
+     "Package gocovmerge takes the results from multiple @code{go test
+-coverprofile} runs and merges them into one profile.  It is a maintained fork
+of @url{https://github.com/wadey/gocovmerge}.")
+    (license license:bsd-2)))
+
 (define-public go-go-simpler-org-sloglint
   (package
     (name "go-go-simpler-org-sloglint")
@@ -3552,6 +3643,13 @@ the source code, it only prints out style mistakes.")
     (propagated-inputs
      (list go-go-yaml-in-yaml-v4))))
 
+(define-public go-gopkg-in-h2non-gock-v1
+  (package/inherit go-github-com-h2non-gock
+    (name "go-gopkg-in-h2non-gock-v1")
+    (arguments
+     (substitute-keyword-arguments arguments
+       ((#:import-path _) "gopkg.in/h2non/gock.v1")))))
+
 (define-public go-gopkg-in-go-playground-assert-v1
   (package
     (inherit go-github-com-go-playground-assert-v2)

gnu/packages/golang-crypto.scm

@@ -1229,6 +1229,36 @@ MetroHash}, a high quality, high performance hash algorithm.")
      "This package provides a hashing function.")
     (license license:expat)))
 
+(define-public go-github-com-digitorus-pkcs7
+  (package
+    (name "go-github-com-digitorus-pkcs7")
+    (version "0.0.0-20250730155240-ffadbf3f398c")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/digitorus/pkcs7")
+              (commit (go-version->git-ref version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0snamp6fbg5vir0lsw5wzvyagrdd832lw6k7cnvcahcgp8l084zc"))))
+    (build-system go-build-system)
+    (arguments
+     (list
+      #:import-path "github.com/digitorus/pkcs7"))
+    (native-inputs
+     (list openssl))
+    (home-page "https://github.com/digitorus/pkcs7")
+    (synopsis "PKCS#7 implementation for Go")
+    (description
+     "This package implements parsing and generation of some
+PKCS#7/Cryptographic Message
+Syntax (@url{https://www.rfc-editor.org/rfc/rfc2315},
+@url{https://www.rfc-editor.org/rfc/rfc5652, RFC 2315}, RFC 5652) structures
+for Go applications.  It's an alternative fork of deprecated
+@url{https://github.com/mozilla-services/pkcs7}.")
+    (license license:expat)))
+
 (define-public go-github-com-dvsekhvalnov-jose2go
   (package
     (name "go-github-com-dvsekhvalnov-jose2go")
@@ -1414,6 +1444,43 @@ providing bidirectional mapping values to their names, plus enum convenience
 for values.")
     (license license:bsd-3)))
 
+(define-public go-github-com-getsops-gopgagent
+  (package
+    (name "go-github-com-getsops-gopgagent")
+    (version "0.0.0-20241224165529-7044f28e491e")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/getsops/gopgagent")
+              (commit (go-version->git-ref version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1n1r7jkb48y06jw2dhkaqs33j6qgwf9fvbisd1zsr6v2k7wgfvf3"))
+       (modules '((guix build utils)))
+       (snippet
+        #~(begin
+            (for-each
+             (lambda (f)
+               ;; XXX: Without this snippet the build fails with
+               ;; code in directory github.com/getsops/gopgagent
+               ;; expects import "go.mozilla.org/gopgagent"
+               (substitute* f
+                 (("import \"go\\.mozilla\\.org/gopgagent\"") "")))
+             '("gpgagent.go" "gpgagent_test.go"))
+            #t))))
+    (build-system go-build-system)
+    (arguments
+     (list
+      #:import-path "github.com/getsops/gopgagent"
+      #:test-flags #~(list "-vet=off")))
+    (home-page "https://github.com/getsops/gopgagent")
+    (synopsis "GPG Agent helpers for Go")
+    (description
+     "This package provides an API to interact with the local GPG Agent from
+Golang.")
+    (license license:asl2.0)))
+
 (define-public go-github-com-gliderlabs-ssh
   (package
     (name "go-github-com-gliderlabs-ssh")
@@ -1681,6 +1748,35 @@ See http://keccak.noekeon.org.")
 MurmurHash} revision (aka MurmurHash3).")
     (license license:bsd-3)))
 
+(define-public go-github-com-hiddeco-sshsig
+  (package
+    (name "go-github-com-hiddeco-sshsig")
+    (version "0.2.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/hiddeco/sshsig")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1raq5j1hr693lcj7nrj3wnsyfp30w96apjxyjmlvxb7ihnkhikv1"))))
+    (build-system go-build-system)
+    (arguments
+     (list
+      #:import-path "github.com/hiddeco/sshsig"))
+    (native-inputs
+     (list go-github-com-stretchr-testify))
+    (propagated-inputs
+     (list go-golang-org-x-crypto))
+    (home-page "https://github.com/hiddeco/sshsig")
+    (synopsis "Messages signing and verification using SSH in Golang")
+    (description
+     "Package sshsig provides an API to sign and verify messages using SSH
+keys.  It is an implementation of the SSH Signature format as described in
+@url{https://github.com/openssh/openssh-portable/blob/V_9_3_P1/PROTOCOL.sshsig}.")
+    (license license:asl2.0)))
+
 (define-public go-github-com-jcmturner-aescts-v2
   (package
     (name "go-github-com-jcmturner-aescts-v2")
@@ -1921,7 +2017,7 @@ hash.")
     (description
      "Package ssh wraps the @code{crypto/ssh} package with a higher-level API
 for building SSH servers.  The goal of the API was to make it as simple as
-using net/http, so the API is very similar.  It's alternaive fork of
+using net/http, so the API is very similar.  It's alternative fork of
 @url{https://github.com/gliderlabs/ssh}.")
     (license license:bsd-3)))
 
@@ -3720,6 +3816,123 @@ is an extremely fast non-cryptographic hash algorithm.")
 @url{https://en.wikipedia.org/wiki/RC2, RC2} Cipher in Golang.")
     (license license:asl2.0)))
 
+(define-public go-github-com-zmap-zcertificate
+  (package
+    (name "go-github-com-zmap-zcertificate")
+    (version "0.0.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/zmap/zcertificate")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1lxayyxb0gvls1l05jglqdf8b7zxz3gw94kwbgxvshs7lc0s6hnw"))))
+    (build-system go-build-system)
+    (arguments
+     (list
+      ;; XXX: Source only, to break cycle with
+      ;; go-github-com-zmap-zcrypto. Addintional inputs requaired only to
+      ;; build CLI:
+      ;; 
+      ;; -  github.com/sirupsen/logrus
+      ;; -  github.com/zmap/zcrypto
+      ;; -  github.com/zmap/zlint/v3
+      #:skip-build? #t
+      #:tests? #f
+      #:import-path "github.com/zmap/zcertificate"))
+    (home-page "https://github.com/zmap/zcertificate")
+    (synopsis "ZCertificate")
+    (description "ZCertificate parses X.509 certificates and runs
+@@url{https://github.com/zmap/zlint,ZLint}.")
+    (license license:asl2.0)))
+
+(define-public go-github-com-zmap-zcrypto
+  (package
+    (name "go-github-com-zmap-zcrypto")
+    (version "0.0.0-20260309174858-0e3c42de5a13")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/zmap/zcrypto")
+              (commit (go-version->git-ref version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0vbgpr2jms9la1nrzxwcfn6ngi3c2pzglh3a3yfkm0ahxvh4wpca"))))
+    (build-system go-build-system)
+    (arguments
+     (list
+      #:import-path "github.com/zmap/zcrypto"
+      #:test-flags
+      ;; Network access is required.
+      #~(list "-skip" (string-join
+                       (list "TestFetchRemote"
+                             "TestVerifyHostname"
+                             "TestTLSVersions"
+                             "TestCipherSuitesBadSSL")
+                       "|"))))
+    (native-inputs
+     (list go-github-com-stretchr-testify
+           go-gopkg-in-check-v1))
+    (propagated-inputs
+     (list go-github-com-mreiferson-go-httpclient
+           go-github-com-op-go-logging
+           go-github-com-sirupsen-logrus
+           go-github-com-weppos-publicsuffix-go
+           go-github-com-zmap-zcertificate
+           go-golang-org-x-crypto
+           go-golang-org-x-net))
+    (home-page "https://github.com/zmap/zcrypto")
+    (synopsis "Liberal Go TLS + X.509 Library for Research")
+    (description
+     "ZCrypto is a research and data collection cryptography library, designed
+to be used for measuring and analyzing cryptographic deployments on the
+Internet.  It is largely centered around the @code{WebPKI}.")
+    ;; See LICENSE file for more details.
+    (license (list license:asl2.0 license:expat license:isc))))
+
+(define-public go-github-com-zmap-zlint-v3
+  (package
+    (name "go-github-com-zmap-zlint-v3")
+    (version "3.6.8")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/zmap/zlint")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "054ddx6xdzhdjd214kp3kby0q5w4z1d4n61fav5vz73afm4z4bij"))))
+    (build-system go-build-system)
+    (arguments
+     (list
+      #:import-path "github.com/zmap/zlint/v3"
+      #:unpack-path "github.com/zmap/zlint"
+      #:build-flags
+      #~(list (string-append "-ldflags=-X main.version=" #$version))
+      #:test-flags
+      ;; gen_test.go:236: exec: "git": executable file not found in $PATH
+      #~(list "-skip" "TestGetTestData|TestSaveCert")))
+    (propagated-inputs
+     (list go-github-com-pelletier-go-toml
+           go-github-com-sirupsen-logrus
+           go-github-com-zmap-zcrypto
+           go-golang-org-x-crypto
+           go-golang-org-x-net
+           go-golang-org-x-text))
+    (home-page "https://github.com/zmap/zlint")
+    (synopsis "X.509 Certificate Linter")
+    (description
+     "ZLint is a X.509 certificate linter that checks for consistency with
+standards (e.g. @url{https://www.ietf.org/rfc/rfc5280.txt, RFC 5280}) and
+other relevant PKI requirements (e.g.
+@url{https://cabforum.org/wp-content/uploads/CA-Browser-Forum-BR-1.4.8.pdf,
+CA/Browser Forum Baseline Requirements}).")
+    (license license:asl2.0)))
+
 (define-public go-gitlab-com-nyarla-go-crypt
   (package
     (name "go-gitlab-com-nyarla-go-crypt")
@@ -4199,6 +4412,19 @@ traffic.")))
 +utility to convert SSH RSA keys to GPG keys.")
     (license license:expat)))
 
+(define-public zlint
+  (package/inherit go-github-com-zmap-zlint-v3
+    (name "zlint")
+    (arguments
+     (substitute-keyword-arguments arguments
+       ((#:tests? _ #t) #f)
+       ((#:skip-build? _ #t) #f)
+       ((#:install-source? _ #t) #f)
+       ((#:import-path _) "github.com/zmap/zlint/v3/cmd/zlint")))
+    (native-inputs (package-propagated-inputs go-github-com-zmap-zlint-v3))
+    (propagated-inputs '())
+    (inputs '())))
+
 ;;;
 ;;; Avoid adding new packages to the end of this file. To reduce the chances
 ;;; of a merge conflict, place them above by existing packages with similar

gnu/packages/golang-vcs.scm

@@ -295,6 +295,115 @@ using the Git pkt-line format used in various Git operations.")
          (replace "go-github-com-go-git-gcfg"
            go-github-com-go-git-gcfg-v2))))))
 
+(define-public go-github-com-cli-go-gh-v2
+  (package
+    (name "go-github-com-cli-go-gh-v2")
+    (version "2.13.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/cli/go-gh")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1a918ll60h65abs14mpnclk1w3468mi7khasixif04ihxd0rcsns"))))
+    (build-system go-build-system)
+    (arguments
+     (list
+      #:skip-build? #t
+      #:import-path "github.com/cli/go-gh/v2"
+      #:embed-files #~(list ".*\\.xml")
+      ;; Network access or git configuration are required.
+      #:test-flags #~(list "-skip" "TestRemotes|TestNewHTTPClient")))
+    (native-inputs
+     (list go-github-com-alecthomas-chroma-v2
+           go-github-com-leaanthony-go-ansi-parser
+           go-github-com-stretchr-testify
+           go-gopkg-in-h2non-gock-v1))
+    (propagated-inputs
+     (list go-github-com-alecaivazis-survey-v2
+           go-github-com-charmbracelet-glamour
+           go-github-com-charmbracelet-lipgloss
+           go-github-com-cli-browser
+           go-github-com-cli-safeexec
+           go-github-com-cli-shurcool-graphql
+           go-github-com-google-shlex
+           go-github-com-henvic-httpretty
+           go-github-com-itchyny-gojq
+           go-github-com-makenowjust-heredoc
+           go-github-com-masterminds-sprig-v3
+           go-github-com-mgutz-ansi
+           go-github-com-muesli-reflow
+           go-github-com-muesli-termenv
+           go-github-com-thlib-go-timezone-local
+           go-golang-org-x-term
+           go-golang-org-x-text
+           go-gopkg-in-yaml-v3))
+    (home-page "https://github.com/cli/go-gh")
+    (synopsis "Go library for the GitHub CLI")
+    (description
+     "Package gh is a library for CLI Go applications to help interface with
+the gh CLI tool, and the @code{GitHub} API.")
+    (license license:expat)))
+
+(define-public go-github-com-cli-go-internal
+  (package
+    (name "go-github-com-cli-go-internal")
+    (version "0.0.0-20241025142207-6c48bcd5ce24")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/cli/go-internal")
+              (commit (go-version->git-ref version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1s2rnmsdj22hg8hz9xv2fj1vs1k9xfz8rvz9bm1cg3ddq33hl4a5"))))
+    (build-system go-build-system)
+    (arguments
+     (list
+      #:skip-build? #t
+      #:import-path "github.com/cli/go-internal"
+      #:test-flags
+      ;; TestSimple/cover requires network access to proxy.golang.org.
+      #~(list "-skip" "TestSimple/cover")))
+    (propagated-inputs
+     (list go-golang-org-x-mod
+           go-golang-org-x-sys
+           go-golang-org-x-tools))
+    (home-page "https://github.com/cli/go-internal")
+    (synopsis "Internal utilities for GitHub CLI")
+    (description
+     "This package provides internal utilities for the GitHub CLI.  It is a
+hard fork of @code{testscript} to allow the @code{gh} maintainers to explore
+its use while providing flexibility for modifications and extensions.")
+    (license license:bsd-3)))
+
+(define-public go-github-com-cli-shurcool-graphql
+  (package
+    (name "go-github-com-cli-shurcool-graphql")
+    (version "0.0.4")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/cli/shurcooL-graphql")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0w5ixfr4ia35n8adadr2rsca3f04bq36fxkgh27fw7rd0mxf199l"))))
+    (build-system go-build-system)
+    (arguments
+     (list
+      #:import-path "github.com/cli/shurcooL-graphql"))
+    (home-page "https://github.com/cli/shurcooL-graphql")
+    (synopsis "GraphQL client implementation for GitHub CLI")
+    (description
+     "This package provides a GraphQL client implementation forked from
+@code{shurcooL/graphql}, customized for use in the GitHub CLI.")
+    (license license:expat)))
+
 (define-public go-github-com-jiangxin-goconfig
   (package
     (name "go-github-com-jiangxin-goconfig")

gnu/packages/gtk.scm

@@ -2183,11 +2183,9 @@ and routines to assist in editing internationalized text.")
     (license license:lgpl2.1+)))
 
 (define-public girara
-  ;; TODO: Move propagated inputs to inputs after core-updates is merged (as
-  ;; of 2024-03)
   (package
     (name "girara")
-    (version "0.4.5")
+    (version "2026.02.04")
     (source
      (origin
        (method git-fetch)
@@ -2196,35 +2194,10 @@ and routines to assist in editing internationalized text.")
               (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "04igidbihgq5k7fh0jd5n26w00qlb47riky6q7qlp5k314d6cd2y"))))
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-before 'check 'start-xserver
-            ;; Tests require a running X server.
-            (lambda* (#:key inputs #:allow-other-keys)
-              (let ((xorg-server (assoc-ref inputs "xorg-server"))
-                    (display ":1"))
-                (setenv "DISPLAY" display)
-
-                ;; On busy machines, tests may take longer than
-                ;; the default of four seconds.
-                (setenv "CK_DEFAULT_TIMEOUT" "20")
-
-                ;; Don't fail due to missing '/etc/machine-id'.
-                (setenv "DBUS_FATAL_WARNINGS" "0")
-                (zero? (system (string-append xorg-server "/bin/Xvfb "
-                                              display " &")))))))))
-    (native-inputs
-     (list pkg-config
-           check
-           gettext-minimal
-           `(,glib "bin")
-           xorg-server-for-tests))
-    ;; Listed in 'Requires.private' of 'girara.pc'.
-    (propagated-inputs (list gtk+ json-glib))
+        (base32 "04adir5a8g2hqgv4vzpg52i2524abpcrqf3fcffrbwp8syan0df1"))))
     (build-system meson-build-system)
+    (native-inputs (list pkg-config))
+    (inputs (list glib))
     (home-page "https://pwmt.org/projects/girara/")
     (synopsis "Library for minimalistic gtk+3 user interfaces")
     (description "Girara is a library that implements a user interface that

gnu/packages/guile-xyz.scm

@@ -918,7 +918,7 @@ generate API documentation for GNU Guile projects.")
 (define-public guile-dotenv
   (package
    (name "guile-dotenv")
-   (version "0.2.1")
+   (version "0.3.1")
     (source
      (origin
        (method git-fetch)
@@ -927,7 +927,7 @@ generate API documentation for GNU Guile projects.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1zgc9xwpz6w64rbndvl8c73lsx935byin921209acyw54j52g706"))))
+        (base32 "0j2m9nnjp7096gdy2b038p7wrx93hgw6i6rfy4gh9hkvk4q43b1m"))))
    (build-system gnu-build-system)
    (arguments
     (list
@@ -948,7 +948,6 @@ generate API documentation for GNU Guile projects.")
           pkg-config
           texinfo))
    (inputs (list guile-3.0))
-   (propagated-inputs (list nyacc))
    (synopsis "Read environment variables specifications from @code{.env} files")
    (description "This package provides a simple Guile interface to @code{.env}
 (or dotenv) files.  It implements parsing of files and setting environment
@@ -990,8 +989,7 @@ variables from them.")
                                              (assoc-ref inputs input)
                                              path))
                                           (list "guile-config"
-                                                "guile-dotenv"
-                                                "nyacc"))))))
+                                                "guile-dotenv"))))))
                       (bin (string-append (ungexp output) "/bin/")))
                  (wrap-program (string-append bin "dotenv")
                    (dep-path "GUILE_LOAD_PATH" site)
@@ -7592,7 +7590,7 @@ with a FSM is being built (for example, from a Makefile.)")
 (define-public guile-ini
   (package
     (name "guile-ini")
-    (version "0.5.6")
+    (version "1.0.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -7601,7 +7599,7 @@ with a FSM is being built (for example, from a Makefile.)")
               (file-name (string-append name "-" version))
               (sha256
                (base32
-                "0mz7mpcf6q1z9j9ydz1ngr4hglci3ghmharv1isx9wgby3l2dcf5"))))
+                "12mfch7dznx67r5zw88pp4ma3pw6akif7kdr0kak1gvawgfy277y"))))
     (build-system gnu-build-system)
     (arguments
      `(#:make-flags '("GUILE_AUTO_COMPILE=0") ;to prevent guild warnings
@@ -7656,8 +7654,8 @@ is an attempt to combine both into something useful.")
       (license license:asl2.0))))
 
 (define-public guile-knots
-  (let ((commit "cb5ec50b341f603e9d129152b45e47cf008ea126")
-        (revision "31"))
+  (let ((commit "d79284b4715efc347b22d510c3e3134a0c584b17")
+        (revision "32"))
     (package
     (name "guile-knots")
     (version (git-version "0" revision commit))
@@ -7668,7 +7666,7 @@ is an attempt to combine both into something useful.")
                     (commit commit)))
               (sha256
                (base32
-                "08gcbyw7kvhk568a30kimhn37m9mygpxhswb294n1141ddmhjchh"))
+                "0i87jc3dznw6pdib0yy49d8066c1jvwp2m01xi92amx45dkl8ixc"))
               (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (arguments

gnu/packages/guile.scm

@@ -856,17 +856,17 @@ Guile's foreign function interface.")
 (define-public guile-bytestructures
   (package
     (name "guile-bytestructures")
-    (version "1.0.10")
+    (version "2.0.2")
     (home-page "https://github.com/TaylanUB/scheme-bytestructures")
     (source (origin
               (method git-fetch)
               (uri (git-reference
                     (url home-page)
-                    (commit version)))
+                    (commit (string-append "v" version))))
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "14k50jln32kkxv41hvsdgjkkfj6xlv06vc1caz01qkgk1fzh72nk"))))
+                "1dyhf39s16q3fvps0mfb65xrlcb8rk8m5kc82ngkwhzmf1svalpc"))))
     (build-system gnu-build-system)
     (arguments
      `(#:make-flags '("GUILE_AUTO_COMPILE=0")     ;to prevent guild warnings
@@ -900,7 +900,7 @@ type system, elevating types to first-class status.")
 (define-public guile-git
   (package
     (name "guile-git")
-    (version "0.10.0")
+    (version "0.11.0")
     (home-page "https://gitlab.com/guile-git/guile-git.git")
     (source (origin
               (method git-fetch)
@@ -910,7 +910,7 @@ type system, elevating types to first-class status.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "01scznpg7356ygdlgn1f2892bwg6fsvp37hbmsk4gsg0g49aj4la"))))
+                "1yjyil6z4k80pjdps8v6h6lxikwxmjxvrslf2jrmq2rrfnajschz"))))
     (build-system gnu-build-system)
     (arguments
      `(#:make-flags '("GUILE_AUTO_COMPILE=0")       ; to prevent guild warnings

gnu/packages/hardware.scm

@@ -112,6 +112,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system glib-or-gtk)
   #:use-module (guix build-system gnu)
+  #:use-module (guix build-system go)
   #:use-module (guix build-system guile)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
@@ -310,6 +311,38 @@ sharing.")
 (define-deprecated-package barrier
   deskflow)
 
+(define-public hd-idle
+  (package
+    (name "hd-idle")
+    (version "1.22")
+    (source
+     (origin
+       (method git-fetch)
+       (uri
+        (git-reference
+          (url "https://github.com/adelolmo/hd-idle")
+          (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "12nckzp00b3y91igp8jzlf6as353la6ar8gp6b646kn9gi2hrla3"))
+       (snippet
+        #~(begin
+            (use-modules (guix build utils))
+            (delete-file-recursively "vendor")))))
+    (build-system go-build-system)
+    (arguments
+     (list #:import-path "github.com/adelolmo/hd-idle"
+           #:install-source? #f))
+    (inputs
+     (list go-github-com-benmcclelland-sgio))
+    (home-page "https://github.com/adelolmo/hd-idle")
+    (synopsis "Spin down idle hard disks")
+    (description "@command{hd-idle} is a utility program for spinning down
+external disks after a period of idle time.  Since most USB hard drives do not
+support setting the idle timer via @command{hdparm}, hd-idle can be used as a
+workaround.")
+    (license license:gpl3+)))
+
 (define-public hw-probe
   (package
     (name "hw-probe")

gnu/packages/ibus.scm

@@ -518,6 +518,8 @@ Japanese language input in most graphical applications.")
     (arguments
      (list
       #:tests? #f ;no tests
+      #:configure-flags
+      #~(list "CFLAGS=-Wno-error=incompatible-pointer-types")
       #:phases
       #~(modify-phases %standard-phases
           (add-after 'unpack 'patch-skk-jisyo
@@ -1133,6 +1135,7 @@ IBus-Table on IBus framework:
                                (string-append out "/libexec/ibus-setup-stt")))))))))
     (inputs
      (list bash-minimal
+           gst-plugins-good ; for pulsesrc
            gst-vosk
            gstreamer
            gtk

gnu/packages/image-viewers.scm

@@ -96,6 +96,7 @@
   #:use-module (gnu packages golang-xyz)
   #:use-module (gnu packages gtk)
   #:use-module (gnu packages graphics)
+  #:use-module (gnu packages haskell-xyz)
   #:use-module (gnu packages image)
   #:use-module (gnu packages image-processing)
   #:use-module (gnu packages imagemagick)
@@ -116,6 +117,7 @@
   #:use-module (gnu packages python-web)
   #:use-module (gnu packages python-xyz)
   #:use-module (gnu packages qt)
+  #:use-module (gnu packages sqlite)
   #:use-module (gnu packages suckless)
   #:use-module (gnu packages stb)
   #:use-module (gnu packages terminals)
@@ -1051,6 +1053,67 @@ synchronization of multiple instances.")
     (home-page "https://nomacs.org/")
     (license license:gpl3+)))
 
+(define-public timg
+  (package
+    (name "timg")
+    (version "1.6.3")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/hzeller/timg")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0xr3g6my2n9ry5mqiw1qvf7m0lpmj20h2xsnh75653ha83wqxmhm"))
+       (modules '((guix build utils)))
+       (snippet
+        ;; Remove bundled sources
+        #~(begin
+            (delete-file-recursively "third_party") #t))))
+    (build-system cmake-build-system)
+    (arguments
+     (list
+      #:configure-flags
+      #~'("-Wno-dev" "-DWITH_OPENSLIDE_SUPPORT=ON")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'configure 'fix-stb-path
+            ;; This package expects stb-image to be at stb/stb_image.h, but
+            ;; Guix puts it at stb_image.h instead
+            (lambda _
+              (substitute* "src/CMakeLists.txt"
+                (("stb/stb")
+                 "stb"))
+              (substitute* "src/stb-image-source.cc"
+                (("#include \"stb/stb_image.h\"")
+                 "#include \"stb_image.h\"")))))
+      #:tests? #f)) ;No tests
+    (inputs (list cairo
+                  ffmpeg
+                  graphicsmagick
+                  libdeflate
+                  libdicom
+                  libexif
+                  libjpeg-turbo
+                  librsvg
+                  libsixel
+                  libxml2
+                  openjpeg
+                  openslide
+                  poppler
+                  qoi
+                  sqlite
+                  stb-image))
+    (native-inputs (list git pandoc pkg-config))
+    (home-page "https://timg.sh/")
+    (synopsis "Terminal image and video viewer")
+    (description
+     "This package provides a user-friendly terminal image viewer that uses
+graphic capabilities of terminals (Sixel, Kitty or iterm2), or 24-Bit color
+capabilities and unicode character blocks if these are not available.")
+    (license license:gpl2)))
+
 (define-public xzgv
   (package
     (name "xzgv")

gnu/packages/image.scm

@@ -74,6 +74,7 @@
   #:use-module (gnu packages cpp)
   #:use-module (gnu packages curl)
   #:use-module (gnu packages compression)
+  #:use-module (gnu packages datastructures)
   #:use-module (gnu packages documentation)
   #:use-module (gnu packages fontutils)
   #:use-module (gnu packages freedesktop)
@@ -106,6 +107,7 @@
   #:use-module (gnu packages qt)
   #:use-module (gnu packages ragel)
   #:use-module (gnu packages sphinx)
+  #:use-module (gnu packages sqlite)
   #:use-module (gnu packages swig)
   #:use-module (gnu packages textutils)
   #:use-module (gnu packages video)
@@ -245,6 +247,29 @@ code is Valgrind-clean and unit tested.")
     (home-page "https://sourceforge.net/projects/iqa/")
     (license license:bsd-4)))
 
+(define-public libdicom
+  (package
+    (name "libdicom")
+    (version "1.2.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/ImagingDataCommons/libdicom")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0l1z8riv7lrw65nswq8lvyvnxn5vc06gydwc96gj3ywb1gcqv831"))))
+    (build-system meson-build-system)
+    (inputs (list check uthash))
+    (native-inputs (list pkg-config))
+    (home-page "https://github.com/ImagingDataCommons/libdicom")
+    (synopsis "C library for reading DICOM files")
+    (description
+     "This package is a C library and a set of command-line tools for reading
+DICOM WSI files.")
+    (license license:expat)))
+
 (define-public libpng
   (package
    (name "libpng")
@@ -1109,6 +1134,41 @@ JPEG 2000 Reference Software.")
     (home-page "https://github.com/uclouvain/openjpeg")
     (license license:bsd-2)))
 
+(define-public openslide
+  (package
+    (name "openslide")
+    (version "4.0.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/openslide/openslide")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "00gc530g0lxm2lhwq249w97021w1v1y9ybqs2z5l1z922s15rhl2"))))
+    (build-system meson-build-system)
+    (inputs (list cairo
+                  gdk-pixbuf
+                  glib
+                  libdicom
+                  libjpeg-turbo
+                  libpng
+                  libtiff
+                  libxml2
+                  openjpeg
+                  sqlite
+                  zlib
+                  zstd))
+    (native-inputs (list pkg-config))
+    (home-page "https://openslide.org/")
+    (synopsis "C library for reading slide image files")
+    (description
+     "OpenSlide is a C library for reading whole slide image files (also known
+as virtual slides).  It provides a consistent and simple API for reading files
+from multiple vendors.")
+    (license license:lgpl2.1)))
+
 (define-public giflib
   (package
     (name "giflib")
@@ -1968,6 +2028,34 @@ possible, all formats supported by the PNG standard are represented.")
 use, copy, modify and distribute these images for any purpose and without fee
 is hereby granted."))))
 
+(define-public qoi
+  (let ((commit "6fff9b70dd79b12f808b0acc5cb44fde9998725e")
+        (revision "0"))
+    (package
+      (name "qoi")
+      (version (git-version "0.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/phoboslab/qoi")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "078zasncyylgnwx6br82nkjssl82wygz6fh8zm65fbfpadzfa3x7"))))
+      (build-system copy-build-system)
+      (arguments
+       (list
+        #:install-plan
+        #~'(("qoi.h" "include/"))
+        #:tests? #f)) ;No tests
+      (home-page "https://qoiformat.org")
+      (synopsis "Library for the QOI image format")
+      (description
+       "This package provides a library for the QOI image format, offering
+fast, lossless image compression.")
+      (license license:expat))))
+
 (define-public libjpeg-turbo
   (package
     (name "libjpeg-turbo")

gnu/packages/instrumentation.scm

@@ -75,33 +75,26 @@
 (define-public babeltrace
   (package
     (name "babeltrace")
-    (version "2.0.5")
+    (version "2.1.2")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://www.efficios.com/files/babeltrace/babeltrace2-"
                                   version ".tar.bz2"))
               (sha256
-               (base32 "1d7jxljbfb4y8jmxm7744ndhh9k9rw8qhmnljb19wz7flzr9x3vv"))))
+               (base32 "171cn0y6qbixqggbw7minf4ggfa1j5yc0a1bsj5rnrxd6k93z0qj"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f  ; FIXME - When Python's bindings are enabled, tests do not
                     ; pass.
        #:make-flags
        ,#~(list
-           (string-append "LDFLAGS=-Wl,-rpath=" #$output "/lib")
-           "DISTSETUPOPTS=--single-version-externally-managed") ;no .egg files
+           (string-append "LDFLAGS=-Wl,-rpath=" #$output "/lib"))
        #:configure-flags
        '("--enable-debug-info"
          "--enable-man-pages"
          "--enable-python-bindings"
          "--enable-python-plugins")
-       #:phases
-       (modify-phases %standard-phases
-         ;; These are recommended in the project's README for a development
-         ;; build configuration.
-         (add-after 'unpack 'reconfigure
-           (lambda _
-             (delete-file "configure"))))))
+       ))
     (inputs
      (list glib))
     ;; NOTE - elfutils is used for the LTTng debug information filter
@@ -110,30 +103,15 @@
     ;; `#:configure-flags`.
     (propagated-inputs
      (list elfutils))
-    ;; NOTE - python-3 is set here for generating the bindings.  Users need to
-    ;; install python-3 in their profile in order to use these bindings.
-    ;;
-    ;; NOTE - Babeltrace 2.0.4 is distributed with a aclocal.m4 that does not
-    ;; support Python3.10.  We can either disable Python's bindings or we can
-    ;; reconfigure the project with our autoconf.  This is because the
-    ;; distribution tarballs are generated on Ubuntu LTS 18.04.
-    ;;
-    ;; `paredit-raise-sexp' on the first list of native inputs and remove the
-    ;; 'autoreconf invocation whenever we bump to the next version that is
-    ;; goind to be generated on Ubuntu LTS 22.04.
     (native-inputs
-     (append
-      (list asciidoc
-            bison
-            flex
-            pkg-config
-            python-3
-            python-sphinx
-            swig-4.0
-            xmltoman)
-      (list autoconf
-            automake
-            libtool)))
+     (list asciidoc
+           bison
+           flex
+           pkg-config
+           python-3
+           python-sphinx
+           swig-4.0
+           xmltoman))
     (home-page "https://babeltrace.org/")
     (synopsis "Trace manipulation toolkit")
     (description "Babeltrace 2 is a framework for viewing, converting,
@@ -388,14 +366,14 @@ many probes which instrument numerous interesting parts of Linux.")
 (define-public lttng-ust
   (package
     (name "lttng-ust")
-    (version "2.13.8")
+    (version "2.15.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://lttng.org/files/lttng-ust/"
                                   "lttng-ust-" version ".tar.bz2"))
               (sha256
                (base32
-                "0dyr4j8f8y6fmfpxb3ajkc1ndwpl1baxzbyc4ksx8ym3p7d9ivyl"))))
+                "0a1yk6cci5yqkdy3fvjdky0lc1sbpcxhpm43vb3h1pahg8y75jbb"))))
     (build-system gnu-build-system)
     (inputs
      (list numactl))
@@ -414,23 +392,19 @@ to ring buffers shared with a consumer daemon.")
 (define-public lttng-tools
   (package
     (name "lttng-tools")
-    (version "2.13.14")
+    (version "2.15.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://lttng.org/files/lttng-tools/"
                                   "lttng-tools-" version ".tar.bz2"))
               (sha256
                (base32
-                "1jxdwm0a3z70jrx6yg57x5cswi7ycgyazng41rkgxnq7mp2gggak"))))
+                "12pjxdfqg9ri4wng143x9dvwcrx9q2kg1isv4xc1v9vdalb92wsd"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags '("--enable-python-bindings")
-       ;; FIXME - Tests are disabled for now because one test hangs
-       ;; indefinetely.  Also, parallel testing is not possible because of how
-       ;; the lttng-daemon handles sessions.  Thus, keep parallel testing
-       ;; disabled even after tests are enabled!
+       ;; FIXME - Tests are disabled for now.
        #:tests? #f
-       #:parallel-tests? #f
        #:phases
        (modify-phases %standard-phases
          (add-before 'configure 'set-environment-variables
@@ -440,11 +414,8 @@ to ring buffers shared with a consumer daemon.")
          ;; We don't put (which "man") here because LTTng uses execlp.
          (add-after 'unpack 'patch-default-man-path
            (lambda _
-             (substitute* "src/common/defaults.h"
-               (("/usr/bin/man") "man"))))
-         (add-before 'configure 'autoreconf
-           (lambda _
-             (invoke "autoreconf" "-vfi"))))))
+             (substitute* "src/common/defaults.hpp"
+               (("/usr/bin/man") "man")))))))
     ;; NOTE - Users have to install python-3 in their profile to use the
     ;; bindings.  We don't put it in the inputs, because the rest of the tools
     ;; can work without it.
@@ -452,31 +423,22 @@ to ring buffers shared with a consumer daemon.")
      (list liburcu popt numactl))
     (propagated-inputs
      (list kmod module-init-tools))
-    ;; NOTE - LTTng 2.13.9 is distributed with a aclocal.m4 that does not
-    ;; support Python3.10.  We can either disable Python's bindings or we can
-    ;; reconfigure the project with our autoconf.  This is because the
-    ;; distribution tarballs are generated on Ubuntu LTS 18.04.
-    ;;
-    ;; `paredit-raise-sexp' on the first list of native inputs and remove the
-    ;; 'autoreconf build step whenever we bump to the next version that is
-    ;; goind to be generated on Ubuntu LTS 22.04.
     (native-inputs
-     (append
-      (list pkg-config
-            perl
-            libpfm4
-            python-3
-            swig-4.0
-            procps
-            which
-            flex
-            bison
-            asciidoc
-            libxml2
-            lttng-ust)
-      (list autoconf
-            automake
-            libtool)))
+     (list
+      asciidoc
+      babeltrace
+      bison
+      flex
+      libpfm4
+      libxml2
+      lttng-ust
+      perl
+      procps
+      python-3
+      swig-4.0
+      which
+      pkg-config
+      ))
     (home-page "https://lttng.org/")
     (synopsis "LTTng userspace tracer libraries")
     (description "The lttng-tools project provides a session

gnu/packages/ipfs.scm

@@ -298,8 +298,8 @@ Verification specification
     (home-page "https://github.com/ipfs/go-bitfield")
     (synopsis "Allocated up-front Bitfield for Golang")
     (description
-     "This package implements a functionality similar to standard
-@code{big.Int} with some optimizations to use in IPFS.")
+     "This package implements bitfields to the standard library's @code{big.Int}
+with some optimizations for use in IPFS.")
     (license (list license:expat license:asl2.0))))
 
 (define-public go-github-com-ipfs-go-block-format
@@ -1191,11 +1191,9 @@ IPLD graph as detailed below.  Objects are demonstrated here using both
            go-github-com-libp2p-go-libp2p))
     (home-page "https://github.com/ipfs/go-peertaskqueue")
     (synopsis "Prioritized queue of abstract tasks distributed among peers")
-    ;; Project has nothing in README, see
-    ;; <https://github.com/ipfs/go-peertaskqueue/issues/1>.
     (description
-     "This package implements a functionality to prioritize queue of abstract
-tasks distributed among peers.")
+     "This package implements a prioritized list of tasks to be executed on
+peers.")
     (license (list license:asl2.0 license:expat))))
 
 (define-public go-github-com-ipfs-go-test

gnu/packages/irc.scm

@@ -14,7 +14,7 @@
 ;;; Copyright © 2022 Jai Vetrivelan <jaivetrivelan@gmail.com>
 ;;; Copyright © 2022 jgart <jgart@dismail.de>
 ;;; Copyright © 2023, 2025 Janneke Nieuwenhuizen <janneke@gnu.org>
-;;; Copyright © 2024, 2025 Ashish SHUKLA <ashish.is@lostca.se>
+;;; Copyright © 2024-2026 Ashish SHUKLA <ashish.is@lostca.se>
 ;;; Copyright © 2024 Christian Miller <christian.miller@dadoes.de>
 ;;; Copyright © 2024 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2025 Zheng Junjie <z572@z572.online>
@@ -348,7 +348,7 @@ Conferencing} and @acronym{ICB, Internet Citizen's Band}.")
 (define-public weechat
   (package
     (name "weechat")
-    (version "4.8.2")
+    (version "4.9.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -357,7 +357,7 @@ Conferencing} and @acronym{ICB, Internet Citizen's Band}.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "06lmbd27fdj7z7v6m096csswp73354516z64apfyz8lr5kh140wq"))))
+                "1pwayhpnyd6nq1sph4hqi43xwqgq6vj6fr8q0xqn0jx5zzjlyx8c"))))
     (build-system cmake-build-system)
     (outputs '("out" "doc"))
     (native-inputs
@@ -393,12 +393,13 @@ Conferencing} and @acronym{ICB, Internet Citizen's Band}.")
            #~(modify-phases %standard-phases
                #$@(if (target-x86?)
                       #~((add-after 'install 'move-doc
-                           (lambda* (#:key outputs #:allow-other-keys)
-                             (let* ((out (assoc-ref outputs "out"))
-                                    (doc (assoc-ref outputs "doc"))
-                                    (from (string-append out "/share/doc/weechat"))
-                                    (to (string-append doc "/share/doc/weechat")))
-                               (mkdir-p (string-append doc "/share/doc"))
+                           (lambda _
+                             (let ((from (string-append #$output
+                                                        "/share/doc/weechat"))
+                                   (to (string-append #$output:doc
+                                                      "/share/doc/weechat")))
+                               (mkdir-p (string-append #$output:doc
+                                                       "/share/doc"))
                                (rename-file from to)))))
                       #~()))))
     (synopsis "Extensible chat client")
@@ -1038,6 +1039,7 @@ but can also be used independently as a logging bot.")
        (uri (git-reference
               (url "https://git.causal.agency/scooper")
               (commit version)))
+       (file-name (git-file-name name version))
        (sha256
         (base32 "0sqb8hg402il38pjhwa3lfyrskf1yr6yjd5fswqvk3d15v1jq4m8"))))
     (build-system gnu-build-system)

gnu/packages/java.scm

@@ -1177,6 +1177,7 @@ new Date();"))))
            fontconfig
            freetype
            giflib
+           gtk+
            lcms
            elfutils
            libjpeg-turbo
@@ -1498,7 +1499,7 @@ new Date();"))))
                               (for-each reset-file-timestamp
                                         (find-files dir #:directories? #t)))
                             (with-directory-excursion dir
-                              (let ((files (find-files "." #:directories? #t)))
+                              (let ((files (find-files ".")))
                                 (apply invoke "zip" "-0" "-X" archive files)))))))
                 (for-each repack-archive
                           (find-files #$output:doc "\\.zip$"))
@@ -1547,6 +1548,7 @@ new Date();"))))
            fontconfig
            freetype
            giflib
+           gtk+
            lcms
            libjpeg-turbo
            libpng

gnu/packages/kde-pim.scm

@@ -5,7 +5,7 @@
 ;;; Copyright © 2021, 2022 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2022 Brendan Tildesley <mail@brendan.scot>
 ;;; Copyright © 2022 Petr Hodina <phodina@protonmail.com>
-;;; Copyright © 2023-2025 Sughosha <sughosha@disroot.org>
+;;; Copyright © 2023-2026 Sughosha <sughosha@disroot.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -70,6 +70,7 @@
   #:use-module (gnu packages sqlite)
   #:use-module (gnu packages gcc)
   #:use-module (gnu packages tls)
+  #:use-module (gnu packages video)
   #:use-module (gnu packages wget)
   #:use-module (gnu packages xdisorg)
   #:use-module (gnu packages xml))
@@ -2104,6 +2105,83 @@ information in non-ASCII character sets.")
 application \"Parts\" to be embedded as a Kontact component (or plugin).")
     (license license:lgpl2.0+)))
 
+(define-public kalarm
+  (package
+    (name "kalarm")
+    (version "25.12.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "mirror://kde/stable/release-service/" version
+                           "/src/kalarm-" version ".tar.xz"))
+       (sha256
+        (base32 "0g8frgnpzbr2npx7i28271yfcv7yqx4h6bzmkgxip1chhycjwps5"))))
+    (build-system qt-build-system)
+    (arguments
+     (list #:qtbase qtbase
+           ;; There are only 2 tests, kadatetimetest and kaeventtest, which
+           ;; fail due to be unable to determine system time zone.
+           #:tests? #f
+           #:configure-flags
+           #~(list "-DENABLE_LIBVLC=OFF"))) ;Use only mpv
+    (native-inputs
+     (list extra-cmake-modules kdoctools pkg-config))
+    (inputs
+     (list akonadi
+           akonadi-contacts
+           akonadi-mime
+           grantleetheme
+           kauth
+           kcalendarcore
+           kcalutils
+           kcodecs
+           kcompletion
+           kconfig
+           kconfigwidgets
+           kcontacts
+           kcrash
+           kdbusaddons
+           kglobalaccel
+           kguiaddons
+           kholidays
+           ki18n
+           kiconthemes
+           kidentitymanagement
+           kio
+           kitemmodels
+           kitemviews
+           kjobwidgets
+           kmailtransport
+           kmime
+           knotifications
+           knotifyconfig
+           kpimtextedit
+           kservice
+           kstatusnotifieritem
+           ktextaddons
+           ktextwidgets
+           kwidgetsaddons
+           kwindowsystem
+           kxmlgui
+           mpv))
+    (home-page "https://apps.kde.org/kalarm/")
+    (synopsis "Alarm manager for KDE")
+    (description "Kalarm is a personal alarm message, command and email
+scheduler application for KDE.
+
+It features:
+@itemize
+@item displaying alarms using your own text message, the text generated by a
+ command, or a text or image file,
+@item audible alarm using a sound file,
+@item recurring alarm on an hours/minutes, daily, weekly, monthly or annual
+ basis, or set it to trigger every time you log in,
+@item display alarms color and font customization, and
+@item support for multiple alarm calendars, which for example enables you to
+ share alarms between a laptop and desktop computer.
+@end itemize")
+    (license license:gpl2+)))
+
 (define-public korganizer
   (package
     (name "korganizer")

gnu/packages/kde-plasma.scm

@@ -2426,6 +2426,7 @@ integration of Qt applications when running on a KDE Plasma workspace.")
                   knotifications
                   kirigami
                   libplasma
+                  lz4
                   mobile-broadband-provider-info
                   modemmanager-qt
                   network-manager
@@ -2439,6 +2440,7 @@ integration of Qt applications when running on a KDE Plasma workspace.")
                   ksvg
                   qcoro-qt6
                   openconnect
+                  qtwebengine
                   qtdeclarative))
     (synopsis "Plasma applet for managing network connections")
     (description "This package provides Plasma applet for managing network

gnu/packages/kubernetes.scm

@@ -0,0 +1,99 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2026 Arthur Rodrigues <arthurhdrodrigues@proton.me>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages kubernetes)
+  #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (guix build-system go)
+  #:use-module (guix gexp)
+  #:use-module (guix git-download)
+  #:use-module (guix packages)
+  #:use-module (gnu packages golang-build)
+  #:use-module (gnu packages golang-check)
+  #:use-module (gnu packages golang-web)
+  #:use-module (gnu packages golang-xyz)
+  #:use-module (gnu packages prometheus))
+
+
+;;;
+;;; Libraries:
+;;;
+
+(define-public go-k8s-io-component-base
+  (package
+    (name "go-k8s-io-component-base")
+    (version "0.34.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/kubernetes/component-base")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "090ghb66zh4mln9fvp89vfq0g4pysm5y4lrp5n6801491mngyndm"))))
+    (build-system go-build-system)
+    (arguments
+     (list
+      #:test-flags
+      #~(list "-skip" "Tracing")
+      #:import-path "k8s.io/component-base"))
+    (native-inputs
+     (list go-github-com-stretchr-testify))
+    (propagated-inputs
+     (list go-github-com-blang-semver-v4
+           go-github-com-go-logr-logr
+           go-github-com-go-logr-zapr
+           go-github-com-google-go-cmp
+           go-github-com-moby-term
+           go-github-com-prometheus-client-golang
+           go-github-com-prometheus-client-model
+           go-github-com-prometheus-common
+           go-github-com-prometheus-procfs
+           go-github-com-spf13-cobra
+           go-github-com-spf13-pflag
+           go-go-opentelemetry-io-contrib-instrumentation-net-http-otelhttp
+           go-go-opentelemetry-io-otel
+           go-go-opentelemetry-io-otel-exporters-otlp-otlptrace
+           go-go-opentelemetry-io-otel-exporters-otlp-otlptrace-otlptracegrpc
+           go-go-opentelemetry-io-otel-sdk
+           go-go-opentelemetry-io-otel-trace
+           go-go-uber-org-zap
+           go-go-yaml-in-yaml-v2
+           go-golang-org-x-sys
+           go-golang-org-x-text
+           go-k8s-io-apimachinery
+           go-k8s-io-client-go
+           go-k8s-io-klog-v2
+           go-k8s-io-utils
+           go-sigs-k8s-io-json))
+    (home-page "https://github.com/kubernetes/component-base")
+    (synopsis "Kubernetes core components Golang source code")
+    (description
+     "This package contains shared code for Kubernetes core components.")
+    (license license:asl2.0)))
+
+
+;;;
+;;; Executables:
+;;;
+
+;;;
+;;; Avoid adding new packages to the end of this file. To reduce the chances
+;;; of a merge conflict, place them above in alphabetic order:
+;;; guix import --insert=gnu/packages/python-xyz.scm pypi <package-name>.
+;;;

gnu/packages/language.scm

@@ -282,16 +282,18 @@ Random Cage Fighting Birds, Cool Music etc.")
 (define-public libchewing
   (package
     (name "libchewing")
-    (version "0.9.1")
+    (version "0.11.0")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
              (url "https://github.com/chewing/libchewing")
-             (commit (string-append "v" version))))
+             (commit (string-append "v" version))
+             ;; Also libchewing-data
+             (recursive? #t)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0gh64wvrk5pn0fhmpvj1j99d5g7f7697rk96zbkc8l72yjr819z5"))))
+        (base32 "08734i3xyq3wv5vimki7cz438v56ywk3x3assgfjlrngj1ijw0y8"))))
     (build-system cmake-build-system)
     (arguments
      (list
@@ -875,7 +877,7 @@ noun phrases, verb phrases, etc.).")
 (define-public praat
   (package
     (name "praat")
-    (version "6.4.61")
+    (version "6.4.62")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -884,7 +886,7 @@ noun phrases, verb phrases, etc.).")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0lxg0h07cgz5fjhpsihvf8dk6g03fp4a7ar8x70pm2s5lbfr1amy"))))
+                "0jplas35yrhh1csdiw2mim4cgmj5iz5c3b87908smd0r528v75a6"))))
     (build-system gnu-build-system)
     (arguments
      (list #:make-flags #~(list (string-append "CC="
@@ -927,7 +929,7 @@ and manipulation.")
 (define-public libskk
   (package
     (name "libskk")
-    (version "1.0.5")
+    (version "1.1.1")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -936,15 +938,10 @@ and manipulation.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0y279pcgs3jrsi9vzx086xhz9jbz23dqqijp4agygc9ackp9sxy5"))
-              (patches
-               (search-patches
-                "libskk-fix-invalid-escape.patch"))))
+                "0x2fswxybc5ii821ydmm7bjn8cyr35zi3mdld2zmaqc7863hzhqq"))))
     (build-system gnu-build-system)
     (arguments
      (list #:parallel-tests? #f        ;Concurrency issues in tests.
-           ;; relax gcc 14 strictness
-           #:configure-flags #~(list "CFLAGS=-g2 -O2 -Wno-error=int-conversion")
            #:phases
            #~(modify-phases %standard-phases
                (add-after 'install 'symlink-skk-jisyo
@@ -959,7 +956,8 @@ and manipulation.")
                          libtool
                          pkg-config
                          vala))
-    (inputs (list libgee json-glib libxkbcommon skk-jisyo))
+    (inputs (list json-glib libxkbcommon skk-jisyo))
+    (propagated-inputs (list glib libgee)) ;required by libskk.pc
     (home-page "https://github.com/ueno/libskk")
     (synopsis "Dealing with Japanese kana-to-kanji conversion")
     (description

gnu/packages/lean.scm

@@ -70,7 +70,7 @@
            python-wrapper
            tzdata-for-tests))
     (inputs
-     (list cadical gmp libuv llvm))
+     (list cadical-2.1 gmp libuv llvm))
     (arguments
      (list
       #:make-flags

gnu/packages/less.scm

@@ -26,6 +26,7 @@
   #:use-module (guix gexp)
   #:use-module (guix licenses)
   #:use-module (gnu packages)
+  #:use-module (gnu packages base)
   #:use-module (gnu packages ncurses)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages perl-compression)
@@ -98,6 +99,7 @@ text editors.")
             ;; dependencies which might never ever be used.
             (lambda* (#:key inputs #:allow-other-keys)
               (let ((file (search-input-file inputs "/bin/file"))
+                    (locale (search-input-file inputs "/bin/locale"))
                     (tput (search-input-file inputs "/bin/tput")))
                 (substitute* "sxw2txt"
                   (("^use warnings;" line)
@@ -107,13 +109,14 @@ text editors.")
                 (substitute* "lesscomplete"
                   (("file -") (string-append file " -")))
                 (substitute* "lesspipe.sh"
-                  (("tput colors")
-                   (string-append tput " colors"))
+                  (("\\<tput\\>") tput)
+                  (("\\<locale\\>") locale)
                   (("file -")
                    (string-append file " -")))))))))
     (inputs
      (list file
            ncurses                      ; for tput
+           glibc                        ; for locale
            perl-archive-zip))
     (native-inputs (list perl))
     (home-page "https://github.com/wofr06/lesspipe")

gnu/packages/linux.scm

@@ -81,7 +81,7 @@
 ;;; Copyright © 2024 Gabriel Wicki <gabriel@erlikon.ch>
 ;;; Copyright © 2024 Sharlatan Hellseher <sharlatanus@gmail.com>
 ;;; Copyright © 2024 Arun Isaac <arunisaac@systemreboot.net>
-;;; Copyright © 2024, 2025 Ashish SHUKLA <ashish.is@lostca.se>
+;;; Copyright © 2024-2026 Ashish SHUKLA <ashish.is@lostca.se>
 ;;; Copyright © 2025 Nigko Yerden <nigko.yerden@gmail.com>
 ;;; Copyright © 2025 Mathieu Laparie <mlaparie@disr.it>
 ;;; Copyright © 2025 John Kehayias <john.kehayias@protonmail.com>
@@ -531,7 +531,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
 ;; The current "stable" kernels. That is, the most recently released major
 ;; versions that are still supported upstream.
 
-(define-public linux-libre-6.19-version "6.19.9")
+(define-public linux-libre-6.19-version "6.19.12")
 (define-public linux-libre-6.19-gnu-revision "gnu")
 (define deblob-scripts-6.19
   (linux-libre-deblob-scripts
@@ -541,12 +541,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
    (base32 "05jpciyypvmy6byaxjl49b1fvzxcnlhknf0xabrdj5152iznrzkh")))
 (define-public linux-libre-6.19-pristine-source
   (let ((version linux-libre-6.19-version)
-        (hash (base32 "1gsmklhqpx5k9wca3gr8j439q8khr9byy7ivxqyr9qqjmyinhq61")))
+        (hash (base32 "1md8b270pdyk9d8cq0qyr8qmymcijmj3gc39nn394wpr0l94yp6f")))
    (make-linux-libre-source version
                             (%upstream-linux-source version hash)
                             deblob-scripts-6.19)))
 
-(define-public linux-libre-6.18-version "6.18.19")
+(define-public linux-libre-6.18-version "6.18.22")
 (define-public linux-libre-6.18-gnu-revision "gnu")
 (define deblob-scripts-6.18
   (linux-libre-deblob-scripts
@@ -556,7 +556,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
    (base32 "0qlih8w8wg4v5cwbmd34rbhb6mjgbx69i9rx3s2vxw7h42q9l0ai")))
 (define-public linux-libre-6.18-pristine-source
   (let ((version linux-libre-6.18-version)
-        (hash (base32 "0309xd8ifsy9pa19s8qnsyxkmcqq4z3p16jckjnnhz6h3hkpibza")))
+        (hash (base32 "0nazlm6j5blyd4qgl0z6xc3qk00vz3cfvx5mqv18awv5ygx94g52")))
    (make-linux-libre-source version
                             (%upstream-linux-source version hash)
                             deblob-scripts-6.18)))
@@ -565,47 +565,47 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
 ;; Here are the support timelines:
 ;; <https://www.kernel.org/category/releases.html>
 
-(define-public linux-libre-6.12-version "6.12.77")
+(define-public linux-libre-6.12-version "6.12.81")
 (define-public linux-libre-6.12-gnu-revision "gnu")
 (define deblob-scripts-6.12
   (linux-libre-deblob-scripts
    linux-libre-6.12-version
    linux-libre-6.12-gnu-revision
    (base32 "168aykyvyyp34549hqhlprl0n052q8wdb2y3vyxqw40wpf2vw3ln")
-   (base32 "1v6glxf94p9z0yq5m102jwcpyh6anpbp3h8wwff9hxlfy2wdlzzk")))
+   (base32 "1x48hpmvajz7v5wn1vdd7l5r14mq4ngzh5npz3pj81z4f1g61i0a")))
 (define-public linux-libre-6.12-pristine-source
   (let ((version linux-libre-6.12-version)
-        (hash (base32 "0rzz5hdixa5xmr99gja3xr9nxgpmrpxyg4llmvkl3vyawpmkd21m")))
+        (hash (base32 "0iw84bqdbh9dlaqd1bqgldg50riw2b5is7ipqnbp0sll8cv9rc62")))
    (make-linux-libre-source version
                             (%upstream-linux-source version hash)
                             deblob-scripts-6.12)))
 
-(define-public linux-libre-6.6-version "6.6.129")
+(define-public linux-libre-6.6-version "6.6.134")
 (define-public linux-libre-6.6-gnu-revision "gnu")
 (define deblob-scripts-6.6
   (linux-libre-deblob-scripts
    linux-libre-6.6-version
    linux-libre-6.6-gnu-revision
    (base32 "0y3lawljby2rl0mb0yjdyaasci4pl935y8xa0dnmbzff23knkxlw")
-   (base32 "0z47f6mkllk1fgpq04x73djl5gh3mj50bxj2rpg4jlzm0rcirrag")))
+   (base32 "0xp9b2vkrb0g0rn4i33b59rhp4sgh1dbwzk28vwz7kwac6l5rcpi")))
 (define-public linux-libre-6.6-pristine-source
   (let ((version linux-libre-6.6-version)
-        (hash (base32 "12j42awg44w97zq8fzifpm300jm9q9ya7qkpn7xbnkr2480qz86a")))
+        (hash (base32 "1grp1wqgzjsk6xyl0nvd2hxlxjj0wgz04x544zkz8srp6rxnjy33")))
    (make-linux-libre-source version
                             (%upstream-linux-source version hash)
                             deblob-scripts-6.6)))
 
-(define-public linux-libre-6.1-version "6.1.166")
+(define-public linux-libre-6.1-version "6.1.168")
 (define-public linux-libre-6.1-gnu-revision "gnu")
 (define deblob-scripts-6.1
   (linux-libre-deblob-scripts
    linux-libre-6.1-version
    linux-libre-6.1-gnu-revision
    (base32 "10gcbkd5jxfspa712kvb3qmsjgsapd9cz47pmpfk03bbfzf8ydlv")
-   (base32 "1jiwwl5sgpc16x0v6phbknv94mc46gvwgc2z8s4pdgn4j54yrd8v")))
+   (base32 "1w5pfws6l39dpc3lzazs1n6r4m96f6rdf6vb2scy5fhmrd933ldc")))
 (define-public linux-libre-6.1-pristine-source
   (let ((version linux-libre-6.1-version)
-        (hash (base32 "0jcl12gjlfdf9pwqg1m84rzwnrj3grxxgk5blrq8zlaq45sgr3c1")))
+        (hash (base32 "0vkp75sfnjvfqxjh6gqcx24h2m6qj6xkwlw6b118cja43vjnz1g0")))
    (make-linux-libre-source version
                             (%upstream-linux-source version hash)
                             deblob-scripts-6.1)))
@@ -945,7 +945,11 @@ ARCH and optionally VARIANT, or #f if there is no such configuration."
     ;; Disable the EFI pstore storage backend to avoid causing
     ;; unrecoverable failures on some EFI systems:
     ;; https://lists.gnu.org/archive/html/help-guix/2025-01/msg00173.html
-    ("CONFIG_EFI_VARS_PSTORE_DEFAULT_DISABLE" . #t)))
+    ("CONFIG_EFI_VARS_PSTORE_DEFAULT_DISABLE" . #t)
+    ;; Provide modules for wireguard and netfilter support
+    ("CONFIG_WIREGUARD" . m)
+    ("CONFIG_IP_NF_FILTER" . m)
+    ("CONFIG_NETFILTER_XT_MATCH_ADDRTYPE" . m)))
 
 (define (config->string options)
   (string-join (map (match-lambda
@@ -1290,8 +1294,6 @@ Linux kernel.  It has been modified to remove all non-free binary blobs.")
                      #:extra-version "arm-generic"
                      #:extra-options
                      (append
-                      `(;; needed to fix the RTC on rockchip platforms
-                        ("CONFIG_RTC_DRV_RK808" . #t))
                       (default-extra-linux-options linux-libre-5.10-version))))
 
 (define-public linux-libre-arm-omap2plus
@@ -1302,6 +1304,31 @@ Linux kernel.  It has been modified to remove all non-free binary blobs.")
                      #:defconfig "omap2plus_defconfig"
                      #:extra-version "arm-omap2plus"))
 
+(define pinebook-extra-modules
+  `(;; Pinebook display, battery, charger and usb
+    ("CONFIG_DRM_ANALOGIX_ANX6345" . m)
+    ("CONFIG_CHARGER_AXP20X" . m)
+    ("CONFIG_INPUT_AXP20X_PEK" . m)
+    ("CONFIG_CHARGER_AXP20X" . m)
+    ("CONFIG_BATTERY_AXP20X" . m)
+    ("CONFIG_PINCTRL_AXP209" . m)
+    ("CONFIG_AXP20X_POWER" . m)
+    ("CONFIG_AXP20X_ADC" . m)
+    ;; Pinebook PRO battery and sound support
+    ("CONFIG_BATTERY_CW2015" . m)
+    ("CONFIG_CHARGER_GPIO" . m)
+    ("CONFIG_SND_SOC_ES8316" . m)))
+
+(define arm64-generic-extra-modules
+  (append
+   pinebook-extra-modules
+   `(;; Provide support for ath9k wireless
+     ("CONFIG_ATH9K_HTC" . m)
+     ;; Support Orange Pi R1 Plus LTS ethernet PHY.
+     ("CONFIG_MOTORCOMM_PHY" . m)
+     ;; needed to fix the RTC on rockchip platforms
+     ("CONFIG_RTC_DRV_RK808" . #t))))
+
 (define-public linux-libre-arm64-generic
   (make-linux-libre* linux-libre-version
                      linux-libre-gnu-revision
@@ -1311,25 +1338,7 @@ Linux kernel.  It has been modified to remove all non-free binary blobs.")
                      #:extra-version "arm64-generic"
                      #:extra-options
                      (append
-                      `(;; Provide support for ath9k wireless
-                        ("CONFIG_ATH9K_HTC" . m)
-                        ;; Support Orange Pi R1 Plus LTS ethernet PHY.
-                        ("CONFIG_MOTORCOMM_PHY" . m)
-                        ;; needed to fix the RTC on rockchip platforms
-                        ("CONFIG_RTC_DRV_RK808" . #t)
-                        ;; Pinebook display, battery, charger and usb
-                        ("CONFIG_DRM_ANALOGIX_ANX6345" . m)
-                        ("CONFIG_CHARGER_AXP20X" . m)
-                        ("CONFIG_INPUT_AXP20X_PEK" . m)
-                        ("CONFIG_CHARGER_AXP20X" . m)
-                        ("CONFIG_BATTERY_AXP20X" . m)
-                        ("CONFIG_PINCTRL_AXP209" . m)
-                        ("CONFIG_AXP20X_POWER" . m)
-                        ("CONFIG_AXP20X_ADC" . m)
-                        ;; Pinebook PRO battery and sound support
-                        ("CONFIG_BATTERY_CW2015" . m)
-                        ("CONFIG_CHARGER_GPIO" . m)
-                        ("CONFIG_SND_SOC_ES8316" . m))
+                      arm64-generic-extra-modules
                       (default-extra-linux-options linux-libre-version))))
 
 (define-public linux-libre-lts-arm64-generic
@@ -1347,25 +1356,7 @@ Linux kernel.  It has been modified to remove all non-free binary blobs.")
                          #:extra-version "arm64-generic"
                          #:extra-options
                          (append
-                          `( ;; Provide support for ath9k wireless
-                            ("CONFIG_ATH9K_HTC" . m)
-                            ;; Support Orange Pi R1 Plus LTS ethernet PHY.
-                            ("CONFIG_MOTORCOMM_PHY" . m)
-                            ;; needed to fix the RTC on rockchip platforms
-                            ("CONFIG_RTC_DRV_RK808" . #t)
-                            ;; Pinebook display, battery, charger and usb
-                            ("CONFIG_DRM_ANALOGIX_ANX6345" . m)
-                            ("CONFIG_CHARGER_AXP20X" . m)
-                            ("CONFIG_INPUT_AXP20X_PEK" . m)
-                            ("CONFIG_CHARGER_AXP20X" . m)
-                            ("CONFIG_BATTERY_AXP20X" . m)
-                            ("CONFIG_PINCTRL_AXP209" . m)
-                            ("CONFIG_AXP20X_POWER" . m)
-                            ("CONFIG_AXP20X_ADC" . m)
-                            ;; Pinebook PRO battery and sound support
-                            ("CONFIG_BATTERY_CW2015" . m)
-                            ("CONFIG_CHARGER_GPIO" . m)
-                            ("CONFIG_SND_SOC_ES8316" . m))
+                          arm64-generic-extra-modules
                           (default-extra-linux-options linux-libre-lts-version)))))
 
 (define-public linux-libre-arm64-generic-5.10
@@ -1377,21 +1368,7 @@ Linux kernel.  It has been modified to remove all non-free binary blobs.")
                      #:extra-version "arm64-generic"
                      #:extra-options
                      (append
-                      `(;; needed to fix the RTC on rockchip platforms
-                        ("CONFIG_RTC_DRV_RK808" . #t)
-                        ;; Pinebook display, battery, charger and usb
-                        ("CONFIG_DRM_ANALOGIX_ANX6345" . m)
-                        ("CONFIG_CHARGER_AXP20X" . m)
-                        ("CONFIG_INPUT_AXP20X_PEK" . m)
-                        ("CONFIG_CHARGER_AXP20X" . m)
-                        ("CONFIG_BATTERY_AXP20X" . m)
-                        ("CONFIG_PINCTRL_AXP209" . m)
-                        ("CONFIG_AXP20X_POWER" . m)
-                        ("CONFIG_AXP20X_ADC" . m)
-                        ;; Pinebook PRO battery and sound support
-                        ("CONFIG_BATTERY_CW2015" . m)
-                        ("CONFIG_CHARGER_GPIO" . m)
-                        ("CONFIG_SND_SOC_ES8316" . m))
+                      arm64-generic-extra-modules
                       (default-extra-linux-options linux-libre-5.10-version))))
 
 (define-public linux-libre-arm64-honeycomb
@@ -1453,9 +1430,6 @@ Linux kernel.  It has been modified to remove all non-free binary blobs.")
                         ;; Fixes https://codeberg.org/guix/guix/issues/101
                         ("CONFIG_KEY_DH_OPERATIONS" . #true)
 
-                        ;; For connecting to ci.guix.gnu.org over VPN.
-                        ("CONFIG_WIREGUARD" . m)
-
                         ;; restool support
                         ("CONFIG_FSL_MC_UAPI_SUPPORT" . #t)
                         ("CONFIG_FSL_MC_BUS" . #t)
@@ -1774,8 +1748,6 @@ Linux kernel.  It has been modified to remove all non-free binary blobs.")
                                            ("CONFIG_USB_ETH_RNDIS" . m)
                                            ("CONFIG_USB_ETH_EEM" . m)
                                            ("CONFIG_USB_G_NCM" . m)
-                                           ;; Provide support for wireguard
-                                           ("CONFIG_WIREGUARD" . m)
                                            ;; Provide support for ath9k wireless
                                            ("CONFIG_ATH9K" . m)
                                            ("CONFIG_ATH9K_HTC" . m))
@@ -2088,8 +2060,6 @@ dtb-$(CONFIG_ARCH_ROCKCHIP) += rk3588-mnt-pocket-reform.dtb")))))))))))
                                            ("CONFIG_USB_ETH_RNDIS" . m)
                                            ("CONFIG_USB_ETH_EEM" . m)
                                            ("CONFIG_USB_G_NCM" . m)
-                                           ;; Provide support for wireguard
-                                           ("CONFIG_WIREGUARD" . m)
                                            ;; Provide support for ath9k wireless
                                            ("CONFIG_ATH9K" . m)
                                            ("CONFIG_ATH9K_HTC" . m))
@@ -2423,8 +2393,6 @@ dtb-$(CONFIG_ARCH_ROCKCHIP) += rk3588-mnt-pocket-reform.dtb")))))))))))
                                            ("CONFIG_USB_ETH_RNDIS" . m)
                                            ("CONFIG_USB_ETH_EEM" . m)
                                            ("CONFIG_USB_G_NCM" . m)
-                                           ;; Provide support for wireguard
-                                           ("CONFIG_WIREGUARD" . m)
                                            ;; Provide support for ath9k wireless
                                            ("CONFIG_ATH9K" . m)
                                            ("CONFIG_ATH9K_HTC" . m))
@@ -2690,7 +2658,7 @@ and should be used with caution, especially on untested models.")
 (define-public corefreq
   (package
     (name "corefreq")
-    (version "1.98.4")
+    (version "2.1.0")
     (source
      (origin
        (method git-fetch)
@@ -2699,7 +2667,7 @@ and should be used with caution, especially on untested models.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0mxp5h23y09674syaj5gpdifr53zvgjv7g7hargwg6897883qfln"))))
+        (base32 "054rnrwvkbfmy2maxjk928fh1p346313ixhkbjwcq7qjz3idjixl"))))
     ;; The upstream Makefile is now such a proprietary mess that standard builds
     ;; as performed by our linux-module-build-system are more or less impossible
     ;; without heavy patching.  However, we still keep it as the main build
@@ -2731,14 +2699,12 @@ and should be used with caution, especially on untested models.")
                         (string-append = dir "\n"))
                        (("^([[:space:]]+)(.* modules_install.*)"
                          _ indent command)
-                        (string-append indent "@echo skipping " command))))))
+                        (string-append indent "echo skipping " command))))))
                (add-before 'build 'prepare
-                 (lambda* (#:key source-directory make-flags #:allow-other-keys)
+                 (lambda* (#:key source-directory #:allow-other-keys)
                    ;; Lazily fix another mismatch between what the kernel module
                    ;; build system expects and what this package provides.
-                   (symlink "source/build" source-directory) ;$(BUILD)
-                   ;; Set up symbolic links inside $(BUILD), for some reason.
-                   (apply invoke "make" "prepare" make-flags)))
+                   (symlink "source/build" source-directory)))
                (replace 'build (assoc-ref gnu:%standard-phases 'build))
                (add-before 'install 'resolve-symlink
                  ;; The build system silently fails to install from a symlink.
@@ -5243,14 +5209,20 @@ or kill them altogether.")
                (base32
                 "0b1jp5gp2gv40gv6cvmv86rcr4l0mdh050qbvnxl0xcwya45qffx"))))
     (build-system meson-build-system)
+    (outputs (list "out" "debug" "static"))
     (inputs
      (list bash-minimal util-linux))
     (arguments
      `(#:configure-flags
        ,#~(list
            (string-append "-Dudevrulesdir=" #$output "/udev/rules.d")
-           "-Duseroot=false")
+           "-Duseroot=false"
+           ;; Build static libraries.
+           "--default-library=both")
        #:tests? #f
+       #:modules ((guix build meson-build-system)
+                  (guix build utils)
+                  (ice-9 ftw))
        #:phases
        ,#~(modify-phases %standard-phases
             (add-after 'unpack 'set-file-names
@@ -5288,7 +5260,20 @@ or kill them altogether.")
                           (string-append #$output "/sbin"))
                   (setenv "UDEV_RULES_PATH"
                           (string-append #$output
-                                         "/lib/udev/rules.d"))))))))
+                                         "/lib/udev/rules.d")))))
+            (add-after 'install 'install-static-libraries
+              (lambda* (#:key outputs #:allow-other-keys)
+                (let ((out (assoc-ref outputs "out"))
+                      (static (assoc-ref outputs "static")))
+                  (mkdir-p (string-append static "/lib"))
+                  (for-each
+                   (lambda (static-library)
+                     (rename-file
+                      (string-append out "/lib/" static-library)
+                      (string-append static "/lib/" static-library)))
+                   (scandir (string-append out "/lib")
+                            (lambda (file-name)
+                              (string-suffix? ".a" file-name))))))))))
     (supported-systems (remove target-hurd? %supported-systems))
     (home-page "https://github.com/libfuse/libfuse")
     (synopsis "Support file systems implemented in user space")
@@ -5359,23 +5344,6 @@ user-space processes.")
                (("-DFUSERMOUNT_DIR=[[:graph:]]+")
                 "-DFUSERMOUNT_DIR=\\\"/var/empty\\\"")))))))))
 
-(define-public fuse-for-appimage
-  (package
-    (inherit fuse)
-    (name "fuse")
-    (version "3.16.2")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append "https://github.com/libfuse/libfuse/releases/"
-                           "download/fuse-" version "/fuse-" version ".tar.gz"))
-       (sha256
-        (base32 "11yfl2w2a445hllyzlakq97n32g06972vxpmh7lpbclnj9fhb5zp"))))
-    (arguments
-     (substitute-keyword-arguments arguments
-       ((#:configure-flags original-flags #~(list))
-        #~(append #$original-flags '("--default-library=static")))))))
-
 (define-public unionfs-fuse
   (package
     (name "unionfs-fuse")
@@ -6021,7 +5989,7 @@ devices that can inject events directly into the input subsystem.")
 (define-public interception-dual-function-keys
   (package
     (name "interception-dual-function-keys")
-    (version "1.4.0")
+    (version "1.5.0")
     (home-page "https://gitlab.com/interception/linux/plugins/dual-function-keys")
     (source (origin
               (method git-fetch)
@@ -6031,7 +5999,7 @@ devices that can inject events directly into the input subsystem.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0s49vbg3j4rwh78i8rx8qr7myql09p7b3lhrjl0p7dd98xp6ann6"))))
+                "17jc02wh45yk427qryb0ydyim16607i31wyghbsahahd6mrh9ylv"))))
     (build-system gnu-build-system)
     (inputs
      (list libevdev yaml-cpp))
@@ -7715,7 +7683,15 @@ and copy/paste text in the console and in xterm.")
                         "/etc/security/limits.d")
          ;; Guix does not use systemd.
          "-Dwith-systemd-user-unit=false"
-         "-Dwith-systemd-group=false")))
+         "-Dwith-systemd-group=false")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'patch-references
+            (lambda _
+              (substitute* '("lib/gamemode_client.h"
+                             "data/gamemoderun")
+                (("libgamemode(auto)?\\.so\\.0" lib)
+                 (string-append #$output "/lib/" lib))))))))
     (native-inputs
      (list pkg-config))
     (inputs
@@ -8432,7 +8408,7 @@ from the ntfs-3g package.  It is meant to be used in initrds.")
 (define-public rdma-core
   (package
     (name "rdma-core")
-    (version "60.0")
+    (version "62.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/linux-rdma/rdma-core"
@@ -8440,7 +8416,7 @@ from the ntfs-3g package.  It is meant to be used in initrds.")
                                   version ".tar.gz"))
               (sha256
                (base32
-                "1pi8jf1pibfhh3ps2kvj2y8y6yahpw7jjyp0mpxmvama9qp8j6wv"))))
+                "1802afy4q80zl7qkxlyq71ll5fsksva43f8xfd6vlqj1c47dc2n0"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f                      ;no tests
@@ -10366,7 +10342,7 @@ comparing system environments.")
 (define-public cassini-headers
   (package
     (name "cassini-headers")
-    (version "12.0.1")
+    (version "14.0.0")
     (home-page "https://github.com/HewlettPackard/shs-cassini-headers")
     (source (origin
               (method git-fetch)
@@ -10376,7 +10352,7 @@ comparing system environments.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0fvhk42pssw67zba4zq1b73d1m9ysc4g8sfibjmmhc0fwr92iamp"))))
+                "074r1snc682f1b6vgswyz55n8zjf5rhqnsl31xsswih7q9q38jda"))))
     (build-system copy-build-system)
     (arguments
      (list #:install-plan
@@ -10395,7 +10371,7 @@ software uses @file{cxi_prov_hw.h} from this package.")
 (define-public cxi-driver
   (package
     (name "cxi-driver")
-    (version "13.0.0")
+    (version "14.0.0")
     (home-page "https://github.com/HewlettPackard/shs-cxi-driver")
     (source
      (origin
@@ -10406,7 +10382,7 @@ software uses @file{cxi_prov_hw.h} from this package.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "1md6ammah7ywk5k9gsxix945w5498hpdfwzr603aiirlz2x4m4wh"))))
+         "07dhdm1az9hvy48iq8bn0wypwyml59yr5aqqyf1yhwrf1basry9g"))))
     ;; TODO: Actually build the Linux driver.
     (build-system copy-build-system)
     (arguments
@@ -10444,7 +10420,7 @@ Currently the Linux driver itself is missing from this package.")
 (define-public libcxi
   (package
     (name "libcxi")
-    (version "13.0.0")
+    (version "14.0.0")
     (home-page "https://github.com/HewlettPackard/shs-libcxi")
     (source
      (origin
@@ -10453,7 +10429,7 @@ Currently the Linux driver itself is missing from this package.")
                            (commit (string-append "release/shs-" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1m8mds1h8plhfn2ja9br31xaiy82ky69685cp1rznanl18inaiff"))))
+        (base32 "03czzz6h9jbmfikd85mx93bn84icnia08h69afw40flmpqidp5kh"))))
     (build-system gnu-build-system)
     (arguments
      (list #:configure-flags
@@ -10497,16 +10473,20 @@ known as Slingshot.")
 (define-public libfabric
   (package
     (name "libfabric")
-    (version "2.3.1")
+    (version "2.5.0")
     (source
      (origin
-       (method url-fetch)
-       (uri
-        (string-append "https://github.com/ofiwg/libfabric/releases/download/v"
-                       version "/libfabric-" version ".tar.bz2"))
-       (sha256
-        (base32 "0npkfkkhyir31r2p1zsfi7yrvcam60fp8ps4s2csjc2drqbrz4rf"))))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/ofiwg/libfabric")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256 (base32 "14yhvywbz98yajffq5pmpphhpdr0g8m8a5579dfy56fpxar441an"))))
     (build-system gnu-build-system)
+    (native-inputs
+     (list autoconf
+           automake
+           libtool))
     (inputs
      (let ((if-supported                          ;XXX: modified from openmpi
             (lambda (package . extra)
@@ -10563,15 +10543,16 @@ libraries, which are often integrated directly into libfabric.")
 (define-public libfabric-1                        ;needed by Open MPI 4.x
   (package
     (inherit libfabric)
+    (name "libfabric")
     (version "1.22.0")
     (source
      (origin
-       (method url-fetch)
-       (uri
-        (string-append "https://github.com/ofiwg/libfabric/releases/download/v"
-                       version "/libfabric-" version ".tar.bz2"))
-       (sha256
-        (base32 "1znmw83rmippv0fwz0x7lgylfk17dr9ckll8lrm4z7kclspnqpj8"))))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/ofiwg/libfabric")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256 (base32 "1scwkfdnlg20hld03pdq83jq1q3nmvj1gravpn02pacqq18bv9xk"))))
     (inputs
      (modify-inputs inputs
        (append cxi-driver-for-libfabric-1)))))
@@ -11011,30 +10992,28 @@ compatible with Python's ConfigParser style of .INI files, including RFC
     (license license:bsd-3)))
 
 (define-public simpleini
-  (let ((commit "6048871ea9ee0ec24be5bd099d161a10567d7dc2")
-        (revision "1"))
-    (package
-      (name "simpleini")
-      (version (git-version "4.22" revision commit))
-      (source (origin
-                (method git-fetch)
-                (uri (git-reference
-                      (url "https://github.com/brofield/simpleini")
-                      (commit commit)))
-                (file-name (git-file-name name version))
-                (sha256
-                 (base32
-                  "1szaflnrzw1zx9v5g6mbbiaf9wfglp4n4jjq2793k9ryz3qxil9j"))))
-      (build-system cmake-build-system)
-      (arguments
-       (list #:configure-flags #~(list "-DSIMPLEINI_USE_SYSTEM_GTEST=ON")))
-      (native-inputs (list googletest))
-      (home-page "https://github.com/brofield/simpleini")
-      (synopsis "Simple API to read and write INI-style files")
-      (description
-       "SimpleIni provides a simple API to read and write INI-style
+  (package
+    (name "simpleini")
+    (version "4.25")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                     (url "https://github.com/brofield/simpleini")
+                     (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1v9s0kr5ca1gdbnlkdz7chzypy0wz95f09l0r6jnmff4qy6db56l"))))
+    (build-system cmake-build-system)
+    (arguments
+     (list #:configure-flags #~(list "-DSIMPLEINI_USE_SYSTEM_GTEST=ON")))
+    (native-inputs (list googletest))
+    (home-page "https://github.com/brofield/simpleini")
+    (synopsis "Simple API to read and write INI-style files")
+    (description
+     "SimpleIni provides a simple API to read and write INI-style
 configuration files.  It supports data files in ASCII, MBCS and Unicode.")
-      (license license:expat))))
+    (license license:expat)))
 
 (define-public xfsprogs
   (package
@@ -11627,7 +11606,7 @@ tools for managing PipeWire.")
 (define-public ell
   (package
     (name "ell")
-    (version "0.79")
+    (version "0.83")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -11636,7 +11615,7 @@ tools for managing PipeWire.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0l8pbgnza58ivknzl3nd6y46mfminhnb3iwq82msi6g282wv7np4"))
+                "1ywq84jgvf7f86srqwpq31w2kzdp875fx039x5g4lx486plgf526"))
               (modules '((guix build utils)))
               (snippet
                #~(begin
@@ -12273,7 +12252,7 @@ that avoids the usage of older system-wide @file{/sys} interface.")
 (define-public libtraceevent
   (package
     (name "libtraceevent")
-    (version "1.7.3")
+    (version "1.9.0")
     (source
      (origin
        (method git-fetch)
@@ -12282,7 +12261,7 @@ that avoids the usage of older system-wide @file{/sys} interface.")
              (commit (string-append name "-" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "06mw2f0xnk6dy9w2z0n4dz7lnm02qfsmnmj2h24453qxlw57x0d6"))
+        (base32 "10fklw4znjhm8mlg6hwlipdyk7v3053lnrc5bpqifnsc8gwqbaz0"))
        (modules '((guix build utils)))
        (snippet
         #~(begin

gnu/packages/llvm.scm

@@ -1412,7 +1412,11 @@ Library.")
      (substitute-keyword-arguments arguments
        ((#:configure-flags flags)
         #~(append #$flags
-                  (list "-DLLVM_TARGETS_TO_BUILD=AMDGPU;X86"
+                  (list #$(string-append
+                           "-DLLVM_TARGETS_TO_BUILD=AMDGPU;X86"
+                           (if (string=? "X86" (system->llvm-target))
+                               ""
+                               (string-append ";" (system->llvm-target))))
                         "-DLLVM_VERSION_SUFFIX=")))))
     (properties `((hidden? . #t)
                   ,@(package-properties llvm-base)))

gnu/packages/lua.scm

@@ -26,6 +26,7 @@
 ;;; Copyright © 2025 Zheng Junjie <z572@z572.online>
 ;;; Copyright © 2025 Ashish SHUKLA <ashish.is@lostca.se>
 ;;; Copyright © 2025 Aaron Boyd <aaron.boyd.org@gmail.com>
+;;; Copyright © 2026 Nguyễn Gia Phong <cnx@loang.net>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -81,6 +82,7 @@
   #:use-module (gnu packages readline)
   #:use-module (gnu packages rsync)
   #:use-module (gnu packages ssh)
+  #:use-module (gnu packages sqlite)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages version-control)
   #:use-module (gnu packages vim)
@@ -389,7 +391,7 @@ handy.")
 (define (make-lua-filesystem name lua)
   (package
     (name name)
-    (version "1.7.0.2")
+    (version "1.9.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -400,7 +402,7 @@ handy.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0zmprgkm9zawdf9wnw0v3w6ibaj442wlc6alp39hmw610fl4vghi"))))
+                "0vd1b9rnbjl24bbnk91jrkli81dc1b2kvpjlsx319azjmynlk0y6"))))
     (build-system gnu-build-system)
     (arguments
      `(#:make-flags
@@ -431,6 +433,9 @@ directory structure and file attributes.")
 (define-public lua5.2-filesystem
   (make-lua-filesystem "lua5.2-filesystem" lua-5.2))
 
+(define-public lua5.4-filesystem
+  (make-lua-filesystem "lua5.4-filesystem" lua-5.4))
+
 (define-public lua-bee
   ;; There are no releases; use the commit known to work with the packaged
   ;; luamake.
@@ -1060,13 +1065,14 @@ Notable examples are GTK+, GStreamer and Webkit.")
 (define (make-lua-lpeg name lua)
   (package
     (name name)
-    (version "1.0.2")
+    (version "1.1.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "http://www.inf.puc-rio.br/~roberto/lpeg/lpeg-"
                                   version ".tar.gz"))
               (sha256
-               (base32 "1zjzl7acvcdavmcg5l7wi12jd4rh95q9pl5aiww7hv0v0mv6bmj8"))))
+               (base32
+                "0aimsjpcpkh3kk65f0pg1z2bp6d83rn4dg6pgbx1yv14s9kms5ab"))))
     (build-system gnu-build-system)
     (arguments
      `(#:phases
@@ -1100,6 +1106,9 @@ Grammars (PEGs).")
 (define-public lua5.2-lpeg
   (make-lua-lpeg "lua5.2-lpeg" lua-5.2))
 
+(define-public lua5.4-lpeg
+  (make-lua-lpeg "lua5.4-lpeg" lua-5.4))
+
 (define (make-lua-luv name lua)
   (package
     (name name)
@@ -1201,6 +1210,184 @@ on numbers.")
 (define-public lua5.1-bitop
   (make-lua-bitop "lua5.1-bitop" lua-5.1))
 
+(define (make-lua-djot name lua)
+  (package
+    (name name)
+    (version "0.2.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/jgm/djot.lua")
+             (commit version)))
+       (file-name (git-file-name name version))
+       (sha256 (base32 "0kivx4yyj2zhj23d93h5rr0ab7gkazd3z7r7aqv1bgmigcw47pj2"))
+       (modules '((guix build utils)))
+       (snippet #~(begin
+                    (delete-file-recursively "clib")
+                    (delete-file-recursively "doc/api")
+                    (delete-file "doc/djot.1")))))
+    (build-system gnu-build-system)
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'patch-makefile
+            (lambda _
+              (substitute* "Makefile"
+                (("^all: .*") "all:\n"))))
+          (delete 'configure)
+          (replace 'check
+            (lambda* (#:key tests? #:allow-other-keys)
+              (when tests?
+                (invoke "lua" "test.lua"))))
+          (replace 'install
+            (lambda _
+              (let ((lua-path
+                     (string-append
+                      #$output
+                      "/share/lua/"
+                      #$(version-major+minor (package-version lua)))))
+                (install-file "djot.lua" lua-path)
+                (copy-recursively "djot" (string-append lua-path "/djot"))))))))
+    (native-inputs (list lua))
+    (home-page "https://github.com/jgm/djot.lua")
+    (synopsis "Lua parser for the djot light markup language")
+    (description
+     "This package provides a Lua parser for djot, a light markup syntax.
+It can produce an AST, rendered HTML, or a stream of match tokens
+that identify elements by source position, which could be used
+for syntax highlighting or a linting tool.")
+    (license license:expat)))
+
+(define-public lua5.4-djot
+  (make-lua-djot "lua5.4-djot" lua-5.4))
+
+(define-public lua-djot
+  (make-lua-djot "lua-djot" lua))
+
+(define-public lua5.2-djot
+  (make-lua-djot "lua5.2-djot" lua-5.2))
+
+(define-public lua5.1-djot
+  (make-lua-djot "lua5.1-djot" lua-5.1))
+
+(define-public djot
+  (package
+    (inherit lua5.1-djot)
+    (name "djot")
+    (arguments
+     (substitute-keyword-arguments (package-arguments lua5.1-djot)
+       ((#:phases phases)
+        #~(modify-phases #$phases
+            (replace 'patch-makefile
+              (lambda _
+                (substitute* "Makefile"
+                  (("^all: .*") "all: doc/djot.1\n"))))
+            (replace 'check
+              (lambda* (#:key tests? #:allow-other-keys)
+                (when tests?
+                  (invoke "luajit" "test.lua"))))
+            (add-after 'install 'install-bin-and-man
+              (lambda* (#:key inputs #:allow-other-keys)
+                (let ((out-lua (string-append #$output "/share/lua/5.1"))
+                      (out-bin (string-append #$output "/bin/djot")))
+                  (copy-file "bin/main.lua" "bin/djot")
+                  (substitute* "bin/djot"
+                    (("^local djot = require" all)
+                     (string-append
+                      "#!"
+                      (search-input-file inputs "bin/luajit")
+                      "\n"
+                      all)))
+                  (install-file "bin/djot" (string-append #$output "/bin"))
+                  (chmod out-bin #o755)
+                  (wrap-program out-bin
+                    `("GUIX_LUA_PATH" ";" = (,out-lua))))
+                (install-file "doc/djot.1"
+                              (string-append #$output "/share/man/man1"))))))))
+    (native-inputs (list pandoc))
+    (inputs (list luajit))))
+
+(define (make-lua-scintillua name lua lua-lpeg lua-filesystem)
+  (package
+    (name name)
+    (version "6.6")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/orbitalquark/scintillua")
+             (commit (string-append "scintillua_" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "121ilpy91wyprqp3la4xzbb60i2yp1xpnvjlahzgzg0vck48njm7"))))
+    (build-system gnu-build-system)
+    (arguments
+     (list
+      #:phases
+      #~(let* ((lua-api-version #$(version-major+minor (package-version lua)))
+               (lua-cpath (string-append "/lib/lua/" lua-api-version))
+               (lua-path (string-append "/share/lua/" lua-api-version))
+               (scintillua (string-append #$output lua-path "/scintillua"))
+               (lexers (string-append scintillua "/lexers")))
+          (modify-phases %standard-phases
+            (delete 'configure)
+            (delete 'build)
+            (delete 'check)             ;move after install
+            (replace 'install
+              (lambda _
+                (mkdir-p scintillua)
+                (copy-recursively "lexers" lexers)
+                (substitute* (string-append lexers "/lexer.lua")
+                  (("package\\.path")
+                   (string-append "('" lexers "/?.lua;' .. package.path)")))
+                (with-output-to-file (string-append scintillua "/init.lua")
+                  (lambda ()
+                    (display
+                     "return require'scintillua.lexers.lexer'\n")))))
+            (add-after 'install 'set-lua-path
+              (lambda* (#:key inputs #:allow-other-keys)
+                (let ((input-dirs (map cdr (alist-delete "source" inputs))))
+                  (setenv "GUIX_LUA_CPATH"
+                          (string-join
+                           (map (lambda (prefix)
+                                  (string-append prefix lua-cpath))
+                                input-dirs)
+                           ";"))
+                  (setenv "GUIX_LUA_PATH"
+                          (string-join
+                           (map (lambda (prefix)
+                                  (string-append prefix lua-path))
+                                (cons #$output input-dirs))
+                           ";")))))
+            (add-after 'set-lua-path 'check
+              (lambda _
+                (substitute* "tests.lua"
+                  (("^package\\.path = .*") "")
+                  (("require\\('lexer'\\)") "require'scintillua'")
+                  (("'lexers'") (string-append "'" lexers "'"))
+                  (("test_lua51" all)
+                   (string-append "skip_" all)))
+                (invoke "lua" "tests.lua")))))))
+      (native-inputs (list lua))
+      (propagated-inputs (list lua-lpeg lua-filesystem))
+      (home-page "https://orbitalquark.github.io/scintillua/")
+      (synopsis "Collection of LPeg lexer for source code")
+      (description
+       "This Lua library provides LPeg lexers for source code syntax
+highlighting.  It can either be used by itself or as a drop-in replacement
+for Scintilla lexers.")
+      (license license:expat)))
+
+(define-public lua-scintillua
+  (make-lua-scintillua "lua-scintillua" lua
+                       lua-lpeg lua-filesystem))
+
+(define-public lua5.4-scintillua
+  (make-lua-scintillua "lua5.4-scintillua" lua-5.4
+                       lua5.4-lpeg lua5.4-filesystem))
+
 (define-public lutok
   (package
     (name "lutok")
@@ -1791,3 +1978,119 @@ way, following established lisp conventions.")
  language.")
     (home-page "https://git.sr.ht/~xerool/fennel-ls")
     (license license:expat)))
+
+(define (make-lua-lunitx name lua)
+  (package
+    (name name)
+    (version "0.8.2")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                     ;; Upstream repository name is "lunit", but it provides
+                     ;; both lunit and lunitx modules.
+                     (url "https://github.com/dcurrie/lunit")
+                     (commit version)))
+              (file-name (git-file-name "lua-lunitx" version))
+              (sha256
+               (base32
+                "0y9szbd2g8xk63s8781bjmw8sv3s5m6rnv47kh1sk21ml3mxi69y"))))
+    (build-system trivial-build-system)
+    (arguments
+      (list
+       #:modules '((guix build utils))
+       #:builder
+       #~(begin
+            (use-modules (guix build utils))
+            (let* ((lua (string-append #$lua "/bin/lua"))
+                   (lua-version #$(version-major+minor (package-version lua)))
+                   (lua-dir (string-append #$output "/share/lua/" lua-version)))
+              (when #$(not (%current-target-system))
+                (with-directory-excursion (string-append #$source "/lua")
+                  (invoke lua "../test/selftest.lua")))
+              (mkdir-p lua-dir)
+              (copy-recursively (string-append #$source "/lua") lua-dir)))))
+    (native-inputs (list lua))
+    (home-page "https://github.com/dcurrie/lunit")
+    (synopsis "Unit testing framework for Lua")
+    (description "Lunit is a unit testing framework for Lua.  It includes
+lunitx extensions adding Lua 5.2 compatibility via @code{lunit.module} and
+the @code{lunitx} module for running tests automatically at program exit.")
+    (license license:expat)))
+
+(define-public lua-lunitx
+  (make-lua-lunitx "lua-lunitx" lua))
+
+(define-public lua5.1-lunitx
+  (make-lua-lunitx "lua5.1-lunitx" lua-5.1))
+
+(define-public lua5.2-lunitx
+  (make-lua-lunitx "lua5.2-lunitx" lua-5.2))
+
+(define-public lua5.4-lunitx
+  (make-lua-lunitx "lua5.4-lunitx" lua-5.4))
+
+(define (make-lua-lsqlite3 name lua lua-lunitx)
+  (package
+    (name name)
+    (version "0.9.6")
+    (source (origin
+              (method url-fetch)
+              (uri "https://lua.sqlite.org/home/zip/lsqlite3_v096.zip")
+              (file-name (string-append "lsqlite3-v" version ".zip"))
+              (sha256
+               (base32
+                "10md6bfvbzflrhz4n75jr1ppmz86mwsip85llny23w2ld9iygipc"))))
+    (build-system gnu-build-system)
+    (arguments
+     (list
+      #:tests? (not (%current-target-system))
+      #:phases
+      #~(modify-phases %standard-phases
+          (delete 'configure)
+          (replace 'build
+            (lambda _
+              (invoke #$(cc-for-target) "-fPIC" "-shared" "-O2"
+                      "-o" "lsqlite3.so"
+                      "lsqlite3.c"
+                      "-llua" "-lsqlite3")))
+          (replace 'install
+            (lambda* (#:key outputs #:allow-other-keys)
+              (let* ((out (assoc-ref outputs "out"))
+                     (lua-version
+                      #$(version-major+minor (package-version lua)))
+                     (cmod-dir (string-append out "/lib/lua/" lua-version)))
+                (install-file "lsqlite3.so" cmod-dir))))
+          (delete 'check)
+          (add-after 'install 'check
+            (lambda* (#:key tests? outputs #:allow-other-keys)
+              (when tests?
+                ;; Built only for the upstream test suite (test-dyld.lua).
+                (invoke #$(cc-for-target) "-fPIC" "-shared" "-O2"
+                        "-o" "extras/libsqlitefunctions.so"
+                        "extras/extension-functions.c"
+                        "-lsqlite3")
+                ;; Only test the dynamic lsqlite3 module; lsqlite3complete
+                ;; (SQLite amalgamation) is not built by this package.
+                (invoke "lua" "test/tests-sqlite3.lua" "lsqlite3")
+                (invoke "lua" "test/test.lua")
+                (invoke "lua" "test/test-dyld.lua")))))))
+    (native-inputs (list unzip lua-lunitx))
+    (inputs (list lua sqlite))
+    (home-page "https://lua.sqlite.org/")
+    (synopsis "SQLite3 binding for Lua")
+    (description "LuaSQLite3 is a thin wrapper around the public domain
+SQLite3 database engine.  It provides a complete binding to the SQLite3 C API
+from within Lua programs.")
+    (license license:expat)))
+
+(define-public lua-lsqlite3
+  (make-lua-lsqlite3 "lua-lsqlite3" lua lua-lunitx))
+
+(define-public lua5.1-lsqlite3
+  (make-lua-lsqlite3 "lua5.1-lsqlite3" lua-5.1 lua5.1-lunitx))
+
+(define-public lua5.2-lsqlite3
+  (make-lua-lsqlite3 "lua5.2-lsqlite3" lua-5.2 lua5.2-lunitx))
+
+(define-public lua5.4-lsqlite3
+  (make-lua-lsqlite3 "lua5.4-lsqlite3" lua-5.4 lua5.4-lunitx))

gnu/packages/mail.scm

@@ -67,6 +67,7 @@
 ;;; Copyright © 2025 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2026 Carlos Durán Domínguez <wurt@wurt.eu>
 ;;; Copyright © 2026 Sergey Trofimov <sarg@sarg.org.ru>
+;;; Copyright © 2026 Nguyễn Gia Phong <cnx@loang.net>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -93,6 +94,7 @@
   #:use-module (gnu packages bash)
   #:use-module (gnu packages bison)
   #:use-module (gnu packages boost)
+  #:use-module (gnu packages build-tools)
   #:use-module (gnu packages c)
   #:use-module (gnu packages calendar)
   #:use-module (gnu packages check)
@@ -767,7 +769,7 @@ operating systems.")
 (define-public neomutt
   (package
     (name "neomutt")
-    (version "20250404")
+    (version "20260105")
     (source
      (origin
        (method git-fetch)
@@ -776,8 +778,21 @@ operating systems.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32
-          "1w53g6l98cd3x2a6m0q245fm5gln95vzpgskvg4dz9yysmbki9az"))))
+        (base32 "1sg6ifabci7xyp3zds1w906vx6jsmyjlfr6bqld7m7hj07by9ndd"))
+       (modules '((guix build utils)
+                  (ice-9 ftw)
+                  (srfi srfi-26)))
+       (snippet
+        #~(begin
+            (define (delete-all-but directory . preserve)
+              (with-directory-excursion directory
+                (let* ((pred (negate (cut member <>
+                                          (cons* "." ".." preserve))))
+                       (items (scandir "." pred)))
+                  (for-each (cut delete-file-recursively <>) items))))
+            (delete-all-but "autosetup"
+              "mutt-gettext.tcl"
+              "mutt-iconv.tcl")))))
     (build-system gnu-build-system)
     (inputs
      (list cyrus-sasl
@@ -793,19 +808,19 @@ operating systems.")
            libxml2
            lmdb
            notmuch
+           sqlite
            `(,zstd "lib")))
     (native-inputs
      `(("automake" ,automake)
+       ("autosetup" ,autosetup)
        ("gettext-minimal" ,gettext-minimal)
        ("pkg-config" ,pkg-config)
        ("docbook-xsl" ,docbook-xsl)
        ("docbook-xml" ,docbook-xml-4.2)
        ("w3m" ,w3m)
-       ("tcl" ,tcl)
-
        ;; Test file data for the unit tests included in the neomutt source.
        ("neomutt-test-files"
-        ,(let ((commit "8629adab700a75c54e8e28bf05ad092503a98f75"))
+        ,(let ((commit "c769cdefd45bcdfc4a72664821bd7f67ad4d5f6c"))
            (origin
              (method git-fetch)
              (uri (git-reference
@@ -814,69 +829,62 @@ operating systems.")
              (file-name (git-file-name "neomutt-test-files" commit))
              (sha256
               (base32
-                "1ci04nqkab9mh60zzm66sd6mhsr6lya8wp92njpbvafc86vvwdlr")))))))
+               "0jvy9z2hmpvcxa10k7f68l2lqdxrppj36c4v8nmjrldkwgpkdaq3")))))))
     (arguments
-     `(#:test-target "test"
-       #:configure-flags
-       (list "--gpgme"
+     (list
+      #:test-target "test"
+      #:configure-flags
+      #~(list "--enable-autocrypt"
+              "--gpgme"
+              ;; Database, implies header caching.
+              "--disable-tokyocabinet"
+              "--disable-qdbm"
+              "--disable-bdb"
+              "--lmdb"
+              "--kyotocabinet"
 
-             ;; Database, implies header caching.
-             "--disable-tokyocabinet"
-             "--disable-qdbm"
-             "--disable-bdb"
-             "--lmdb"
-             "--kyotocabinet"
+              "--gdbm"
 
-             "--gdbm"
+              "--gnutls"
+              "--sasl"
+              (string-append "--with-sasl="
+                             #$(this-package-input "cyrus-sasl"))
 
-             "--gnutls"
-             "--ssl=1"
-             "--sasl"
-             (string-append "--with-sasl="
-                            (assoc-ref %build-inputs "cyrus-sasl"))
+              "--smime"
+              "--notmuch"
+              (string-append "--with-notmuch="
+                             #$(this-package-input "notmuch"))
 
-             "--smime"
-             "--notmuch"
-             (string-append "--with-notmuch="
-                            (assoc-ref %build-inputs "notmuch"))
+              "--idn2"
 
-             "--idn2"
-
-             ;; If we do not set this, neomutt wants to check
-             ;; whether the path exists, which it does not
-             ;; in the chroot.
-             "--with-mailpath=/var/mail"
-
-             (string-append "--with-ncurses="
-                            (assoc-ref %build-inputs "ncurses"))
-             (string-append "--prefix="
-                            (assoc-ref %outputs "out"))
-             "--zstd=1")
-       #:phases
-       (modify-phases %standard-phases
-         ;; TODO: autosetup is meant to be included in the source,
-         ;; but we should package autosetup and use our own version of it.
-         (replace 'configure
-           (lambda* (#:key outputs inputs configure-flags #:allow-other-keys)
-             (let* ((out (assoc-ref outputs "out"))
-                    (flags `(,@configure-flags))
-                    (bash (which "bash")))
-               (setenv "SHELL" bash)
-               (setenv "CONFIG_SHELL" bash)
-               (apply invoke bash
-                      (string-append (getcwd) "/configure")
-                      flags))))
-         (add-before 'check 'prepare-test-files
-           (lambda* (#:key inputs #:allow-other-keys)
-             (copy-recursively (assoc-ref inputs "neomutt-test-files") "tests")
-             ;; FIXME: investigate why tests are failing, Nix is also disabling one
-             (substitute* "test/main.c"
-                          (("NEOMUTT_TEST_ITEM\\(test_expando_filter\\)") "")
-                           (("NEOMUTT_TEST_ITEM\\(test_mutt_sig_exit_handler\\)") "")
-                           (("NEOMUTT_TEST_ITEM\\(test_mutt_path_tilde\\)") ""))
-             (with-directory-excursion "tests"
-               (setenv "NEOMUTT_TEST_DIR" (getcwd)) ; must be absolute
-               (invoke "bash" "setup.sh")))))))
+              ;; If we do not set this, neomutt wants to check
+              ;; whether the path exists, which it does not
+              ;; in the chroot.
+              "--with-mailpath=/var/mail"
+              (string-append "--with-ncurses="
+                             #$(this-package-input "ncurses"))
+              (string-append "--prefix=" #$output)
+              "--zstd=1")
+      #:phases
+      #~(modify-phases %standard-phases
+          (replace 'configure
+            (lambda* (#:key configure-flags #:allow-other-keys)
+              (apply invoke "autosetup"
+                     (string-append "--prefix=" #$output)
+                     configure-flags)))
+          (add-before 'check 'prepare-test-files
+            (lambda _
+              (copy-recursively
+               #$(this-package-native-input "neomutt-test-files")
+               "tests")
+              ;; FIXME: investigate why tests are failing, Nix also disables
+              ;; (a different) one: test_expando_node_padding.
+              (substitute* "test/main.c"
+                (("NEOMUTT_TEST_ITEM\\(test_expando_filter\\)") "")
+                (("NEOMUTT_TEST_ITEM\\(test_mutt_path_tilde\\)") ""))
+              (with-directory-excursion "tests"
+                (setenv "NEOMUTT_TEST_DIR" (getcwd)) ; must be absolute
+                (invoke "bash" "setup.sh")))))))
     (home-page "https://neomutt.org/")
     (synopsis "Command-line mail reader based on Mutt")
     (description
@@ -1411,22 +1419,25 @@ attachments, create new maildirs, and so on.")
 (define-public alot
   (package
     (name "alot")
-    (version "v0.12")
+    (version "0.12")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
               (url "https://github.com/pazz/alot")
-              (commit version)))
+              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
         (base32 "018zqpjrl3cggj1myysjj04a054mg890khhdh1qjmd70k8l3w1di"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-      ;; tests: 334 passed, 4 deselected, 9 xfailed, 29 warnings, 11 subtests
+      ;; tests: 299 passed, 39 deselected, 9 xfailed, 29 warnings, 11 subtests
       #:test-flags
       #~(list
+         ;; Randomly fails with FileNotFoundError; does not happen
+         ;; in git checkout though, so no upstream issue.
+         "--deselect=tests/test_crypto.py"
          "-k" (string-join
                ;; alot.settings.errors.ConfigError: failed to read notmuch
                ;; config with command ...
@@ -5248,6 +5259,6 @@ features:
     (home-page "https://github.com/emersion/hydroxide")
     (synopsis "ProtonMail CardDAV, IMAP and SMTP bridge")
     (description
-     "This package implements a functionality to translate standard
-protocols (SMTP, IMAP, CardDAV) into ProtonMail API requests.")
+     "A third-party, open-source ProtonMail bridge.  It is designed to run on a
+server.  It supports CardDAV, IMAP and SMTP.")
     (license license:expat)))

gnu/packages/maths.scm

@@ -30,7 +30,7 @@
 ;;; Copyright © 2018 Eric Brown <brown@fastmail.com>
 ;;; Copyright © 2018, 2021, 2024 Julien Lepiller <julien@lepiller.eu>
 ;;; Copyright © 2018 Amin Bandali <bandali@gnu.org>
-;;; Copyright © 2019, 2021-2025 Nicolas Goaziou <mail@nicolasgoaziou.fr>
+;;; Copyright © 2019, 2021-2026 Nicolas Goaziou <mail@nicolasgoaziou.fr>
 ;;; Copyright © 2019 Steve Sprang <scs@stevesprang.com>
 ;;; Copyright © 2019 Robert Smith <robertsmith@posteo.net>
 ;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
@@ -159,6 +159,7 @@
   #:use-module (gnu packages image-processing)
   #:use-module (gnu packages java)
   #:use-module (gnu packages less)
+  #:use-module (gnu packages libedit)
   #:use-module (gnu packages lisp)
   #:use-module (gnu packages linux)
   #:use-module (gnu packages llvm)
@@ -446,6 +447,67 @@ programming languages.")
     (home-page "https://stcorp.nl/coda")
     (license license:gpl2+)))
 
+(define-public cvc5
+  (package
+    (name "cvc5")
+    (version "1.3.3")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/cvc5/cvc5/")
+             (commit (string-append "cvc5-" version))))
+       (file-name (git-file-name name version))
+       (patches (search-patches "cvc5-reproducible-build.patch"))
+       (sha256
+        (base32 "0ynz7di4dyyiiydgmf0z9dc2jl7nm44xi0amch29rcgznwr4wy5m"))))
+    (build-system cmake-build-system)
+    (arguments
+     (list
+      #:build-type "Production"
+      #:configure-flags
+      ;; Keep the flags in sync with the options set by `./configure --best`.
+      ;; See <https://github.com/cvc5/cvc5/blob/cvc5-1.3.3/configure.sh#L216-L222>.
+      #~(list "-DBUILD_SHARED_LIBS=1"
+              "-DENABLE_GPL=ON"
+              "-DUSE_EDITLINE=ON"
+              "-DUSE_CLN=ON"
+              "-DUSE_POLY=ON"
+              "-DENABLE_IPO=ON"
+              "-DUSE_CRYPTOMINISAT=ON")
+      ;; TODO: The reduce_constant_dup test fails, needs investigation.
+      #:test-exclude "reduce_constants_dup\\.smt2"
+      #:phases
+      #~(modify-phases %standard-phases
+          ;; Guix's libedit package does not require -ltinfo.
+          (add-after 'unpack 'remove-tinfo
+            (lambda _
+              (substitute* "cmake/FindEditline.cmake"
+                ((" tinfo")
+                 ""))))
+          ;; The 'check phase requires test programs build using 'build-tests'.
+          (add-before 'check 'build-tests
+            (lambda _
+              (invoke "cmake" "--build" "." "--target" "build-tests"))))))
+    (inputs (list cadical-2.1
+                  cln
+                  cryptominisat
+                  gmp
+                  libedit
+                  libpoly
+                  symfpu))
+    (native-inputs (list pkg-config
+                         python-minimal
+                         python-tomli
+                         python-pyparsing
+                         python-pexpect))
+    (home-page "https://cvc5.github.io/")
+    (synopsis "Satisfiability modulo theories solver")
+    (description
+     "cvc5 is a solver for @acronym{SMT, satisfiability modulo theories}
+problems.  It processes input in the standard SMT-LIB format.")
+    (license (list license:expat license:bsd-3))))
+
 (define-public qdldl
   (package
     (name "qdldl")
@@ -5015,6 +5077,7 @@ book.")
            (lambda _
              (let ((chuffed #$(this-package-input "chuffed"))
                    (gecode #$(this-package-input "gecode"))
+                   (or-tools #$(this-package-input "or-tools"))
                    (pkgdatadir (string-append #$output
                                               "/share/minizinc")))
                (call-with-output-file (string-append pkgdatadir
@@ -5035,11 +5098,11 @@ book.")
                    (copy-recursively
                      (string-append solver "/share/minizinc/solvers")
                      (string-append pkgdatadir "/solvers")))
-                 (list gecode chuffed))))))))
+                 (list chuffed gecode or-tools))))))))
     (native-inputs
      (list bison flex))
     (inputs
-     (list cbc chuffed gecode zlib))
+     (list cbc chuffed gecode or-tools zlib))
     (home-page "https://www.minizinc.org")
     (synopsis "High-level constraint modeling language")
     (description "MiniZinc is a high-level modeling language for constraint
@@ -9470,7 +9533,7 @@ built on top of DUNE, the Distributed and Unified Numerics Environment.")
 (define-public nauty
   (package
     (name "nauty")
-    (version "2.9.1")
+    (version "2.9.3")
     (source
      (origin
        (method url-fetch)
@@ -9478,7 +9541,7 @@ built on top of DUNE, the Distributed and Unified Numerics Environment.")
              "https://pallini.di.uniroma1.it/"
              "nauty" (string-join (string-split version #\.) "_") ".tar.gz"))
        (sha256
-        (base32 "0gl7rpl2viahrqmjrrgv0iq31xz093p5sk1ns9r2qdqas43ak3s8"))))
+        (base32 "0nqvri1jfi95xswrcvn9dkyriy7pkjry6nwqhdc0z2pq0jpfvi4z"))))
     (build-system gnu-build-system)
     (outputs '("out" "lib"))
     (arguments
@@ -9895,19 +9958,19 @@ also included.")
 (define-public cadical
   (package
     (name "cadical")
-    (version "2.0.0")
+    (version "2.2.1")
     (source (origin
               (method git-fetch)
               (uri (git-reference
                     (url "https://github.com/arminbiere/cadical")
                     (commit (string-append "rel-" version))))
               (file-name (git-file-name name version))
-              (patches (search-patches "cadical-add-shared-library.patch"))
               (sha256
-               (base32 "1dzjah3z34v89ka48hncwqkxrwl4xqn9947p0ipf39lxshrq91xa"))))
+               (base32 "09p4nm8jyvhnsgpmbawzlk8b932k33s922a2rxm77sy8s31mm13m"))))
     (build-system gnu-build-system)
     (arguments
      (list #:test-target "test"
+           #:configure-flags #~(list "-shared")
            #:modules `(((guix build copy-build-system) #:prefix copy:)
                        (guix build gnu-build-system)
                        (guix build utils)
@@ -9915,18 +9978,20 @@ also included.")
            #:imported-modules %copy-build-system-modules
            #:phases
            #~(modify-phases %standard-phases
+               ;; By default, cadical defines the DATE macro to have a $(date)
+               ;; value.  This makes the build not reproducible.  If the macro
+               ;; is not defined it uses __DATE__ and __TIME__, which we patch
+               ;; to return a fixed date.  Thus, achieving a reproducible build.
+               ;;
+               ;; An upstream patch for respecting SOURCE_DATE_EPOCH is pending.
+               ;; See also <https://github.com/arminbiere/cadical/pull/164>.
+               (add-after 'unpack 'no-build-date
+                 (lambda _
+                   (substitute* "scripts/make-build-header.sh"
+                     (("\\[ x\"\\$DATE\" = x\" \" \\]") "true"))))
                (replace 'configure
                  (lambda* (#:key configure-flags #:allow-other-keys)
-                   (setenv "CXXFLAGS" "-DPIC -fPIC")
                    (apply invoke "./configure" configure-flags)))
-               (replace 'check
-                 (lambda args
-                   ;; Tests are incorrectly linked upstream.
-                   ;; Since we don't install them, just work around this in the
-                   ;; check phase.
-                   (setenv "LD_LIBRARY_PATH" (string-append (getcwd) "/build"))
-                   (apply (assoc-ref %standard-phases 'check) args)
-                   (unsetenv "LD_LIBRARY_PATH")))
                (replace 'install
                  (lambda args
                    (apply
@@ -9944,6 +10009,39 @@ also included.")
 clause learning.")
     (license license:expat)))
 
+(define-public cadical-2.1
+  (package
+    (inherit cadical)
+    (name "cadical")
+    (version "2.1.3")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/arminbiere/cadical")
+                    (commit (string-append "rel-" version))))
+              (file-name (git-file-name name version))
+              (patches (search-patches "cadical-add-shared-library.patch"))
+              (sha256 (base32
+                       "1gl0xd6zyxb127w8k0mps9m2izaqb7im7j91by4lkknmm7xhwyav"))))
+    (arguments (substitute-keyword-arguments (package-arguments cadical)
+                 ((#:configure-flags _)
+                  #~(list))
+                 ((#:phases phases)
+                  #~(modify-phases #$phases
+                      (add-before 'configure 'set-shared-flags
+                        (lambda _
+                          (setenv "CXXFLAGS" "-DPIC -fPIC")))
+                      (replace 'check
+                        (lambda args
+                          ;; Tests are incorrectly linked upstream.
+                          ;; Since we don't install them, just work around this in the
+                          ;; check phase.
+                          (setenv "LD_LIBRARY_PATH"
+                                  (string-append (getcwd) "/build"))
+                          (apply (assoc-ref %standard-phases
+                                            'check) args)
+                          (unsetenv "LD_LIBRARY_PATH")))))))))
+
 (define-public cadiback
   (let ((commit "789329d8fcda851085ed72f1b07d8c3f46243b8a")
         (revision "1"))
@@ -10058,7 +10156,20 @@ true in all models.")
                  (add-after 'unpack 'no-tune-native
                    (lambda _
                      (substitute* "CMakeLists.txt"
-                       (("-mtune=native") "")))))))
+                       (("-mtune=native") ""))))
+                 ;; Refer to the library in ${LOUVAIN_COMMUNITIES_LIBRARIES} by
+                 ;; full path.  This ensures that we find references to it in
+                 ;; software using this library via CMake.
+                 ;;
+                 ;; CMake expects module to set this variable to a full path.
+                 ;; See <https://cmake.org/cmake/help/v4.3/module/SelectLibraryConfigurations.html#command:select_library_configurations>.
+                 (add-after 'unpack 'cmake-lib-full-path
+                   (lambda* (#:key outputs #:allow-other-keys)
+                     (substitute* "louvain_communitiesConfig.cmake.in"
+                       (("louvain_communities")
+                        (string-append
+                          (assoc-ref outputs "out")
+                          "/lib/liblouvain_communities.so"))))))))
       (native-inputs (list python))
       (home-page "https://github.com/meelgroup/louvain-community")
       (synopsis "Multi-criteria community detection")

gnu/packages/matrix.scm

@@ -437,7 +437,8 @@ fetch and store media in Amazon S3.")
                  (apply (assoc-ref cargo:%standard-phases phase)
                         #:cargo-target #$(cargo-triplet)
                         args))
-               '(unpack-rust-crates
+               '(prepare-rust-crates
+                 unpack-rust-crates
                  configure
                  check-for-pregenerated-files
                  patch-cargo-checksums))))

gnu/packages/messaging.scm

@@ -101,6 +101,7 @@
   #:use-module (gnu packages golang-check)
   #:use-module (gnu packages golang-compression)
   #:use-module (gnu packages golang-crypto)
+  #:use-module (gnu packages golang-maths)
   #:use-module (gnu packages golang-web)
   #:use-module (gnu packages golang-xyz)
   #:use-module (gnu packages graphviz)
@@ -1183,7 +1184,7 @@ of xmpppy.")
 (define-public gajim
   (package
     (name "gajim")
-    (version "2.4.4")
+    (version "2.4.5")
     (source
      (origin
        (method url-fetch)
@@ -1191,7 +1192,7 @@ of xmpppy.")
                            (version-major+minor version)
                            "/gajim-" version ".tar.gz"))
        (sha256
-         (base32 "0s2jryg8c0ifgf88pfj7k1ifhl1l2fw4w8w80g7xh3qpk5gj7ml0"))
+         (base32 "1rkxzf1pfd29rip5bw4730fl7b2xk12zpiwnfkyzxlkmbh4j3kp2"))
        (patches
          (search-patches "gajim-honour-GAJIM_PLUGIN_PATH.patch"))))
     (build-system pyproject-build-system)
@@ -1261,7 +1262,7 @@ of xmpppy.")
           ;; FIXME: Cannot use this expression as it would
           ;; introduce a circular dependency at the top level.
           ;; (version-major+minor (package-version python))
-          "3.10"
+          "3.11"
           "/site-packages"))))))
     (native-inputs
      (list gettext-minimal
@@ -2356,7 +2357,11 @@ for the Matrix protocol.  It is built on to of @code{Boost.Asio}.")
        (sha256
         (base32 "098jqccwsfbqkdpnhbych2rd076385wb51fx9qyjfiddidxv2mas"))
        (modules '((guix build utils)))
-       (snippet '(delete-file-recursively "third_party"))))
+       (snippet '(delete-file-recursively "third_party"))
+       ;; Release 0.12.1 has a major bug which prevents replies
+       ;; from rendering: https://github.com/Nheko-Reborn/nheko/issues/1944
+       ;; TODO: revaluate for future versions.
+       (patches (search-patches "nheko-0-12-1-fix-rendering-replies.patch"))))
     (arguments
      (list
       #:tests? #f                       ;no test target
@@ -3230,6 +3235,7 @@ share/zulip/integrations or in lib/<...>/site-packages/integrations:
        (snippet '(for-each delete-file-recursively
                   ;; TODO: unbundle the rest as well
                   '("vendor/filippo.io"
+                    "vendor/github.com/apex"
                     "vendor/github.com/blang"
                     "vendor/github.com/d5"
                     "vendor/github.com/davecgh"
@@ -3239,25 +3245,31 @@ share/zulip/integrations or in lib/<...>/site-packages/integrations:
                     "vendor/github.com/go-asn1-ber"
                     "vendor/github.com/golang"
                     "vendor/github.com/golang-jwt"
-                    "vendor/github.com/google/uuid"
-                    "vendor/github.com/gorilla/websocket"
+                    "vendor/github.com/gomarkdown"
+                    "vendor/github.com/google"
+                    "vendor/github.com/gorilla"
                     "vendor/github.com/hashicorp"
+                    "vendor/github.com/Jeffail"
                     "vendor/github.com/jpillora"
                     "vendor/github.com/json-iterator"
                     "vendor/github.com/kballard"
                     "vendor/github.com/klauspost"
+                    "vendor/github.com/labstack/echo"
                     "vendor/github.com/magiconair"
-                    "vendor/github.com/mattn/go-colorable"
-                    "vendor/github.com/mattn/go-isatty"
-                    "vendor/github.com/mattn/go-runewidth"
-                    "vendor/github.com/mgutz/ansi"
+                    "vendor/github.com/matterbridge/gomatrix"
+                    "vendor/github.com/mattn"
+                    "vendor/github.com/mgutz"
+                    "vendor/github.com/minio/md5-simd"
                     "vendor/github.com/minio/sha256-simd"
                     "vendor/github.com/mitchellh"
                     "vendor/github.com/modern-go"
                     "vendor/github.com/opentracing"
+                    "vendor/github.com/pborman"
                     "vendor/github.com/pelletier"
+                    "vendor/github.com/philhofer"
                     "vendor/github.com/pkg"
                     "vendor/github.com/pmezard"
+                    "vendor/github.com/remyoudompheng"
                     "vendor/github.com/rivo"
                     "vendor/github.com/russross"
                     "vendor/github.com/sirupsen"
@@ -3265,15 +3277,24 @@ share/zulip/integrations or in lib/<...>/site-packages/integrations:
                     "vendor/github.com/spf13"
                     "vendor/github.com/stretchr"
                     "vendor/github.com/subosito"
-                    "vendor/github.com/valyala/bytebufferpool"
-                    "vendor/github.com/vmihailenco/tagparser"
+                    "vendor/github.com/tinylib"
+                    "vendor/github.com/valyala"
+                    "vendor/github.com/vmihailenco"
+                    "vendor/go.mau.fi"
                     "vendor/go.uber.org"
                     "vendor/golang.org"
-                    "vendor/google.golang.org/protobuf/"
+                    "vendor/google.golang.org"
                     "vendor/gopkg.in/ini.v1"
                     "vendor/gopkg.in/natefinch"
                     "vendor/gopkg.in/yaml.v2"
-                    "vendor/gopkg.in/yaml.v3")))
+                    "vendor/gopkg.in/yaml.v3"
+                    "vendor/lukechampine.com"
+                    "vendor/modernc.org/cc"
+                    "vendor/modernc.org/mathutil"
+                    "vendor/modernc.org/memory"
+                    "vendor/modernc.org/opt"
+                    "vendor/modernc.org/strutil"
+                    "vendor/modernc.org/token")))
        (sha256
         (base32 "0939fiy7z53izznfhlr7c6vaskbmkbj3ncb09fzx5dmz9cjngy80"))))
     (build-system go-build-system)
@@ -3296,12 +3317,13 @@ share/zulip/integrations or in lib/<...>/site-packages/integrations:
              go-golang-org-x-time
              go-golang-org-x-tools
              ;; google.golang.org
+             go-google-golang-org-appengine
              go-google-golang-org-protobuf
              ;; gopkg.in
              go-gopkg-in-ini-v1
+             go-gopkg-in-natefinch-lumberjack-v2
              go-gopkg-in-yaml-v2
              go-gopkg-in-yaml-v3
-             go-gopkg-in-natefinch-lumberjack-v2
              ;; filippo.io
              go-filippo-io-edwards25519
              ;; uber.org
@@ -3309,6 +3331,7 @@ share/zulip/integrations or in lib/<...>/site-packages/integrations:
              go-go-uber-org-multierr
              go-go-uber-org-zap
              ;; github.com
+             go-github-com-apex-log
              go-github-com-blang-semver
              go-github-com-d5-tengo-v2
              go-github-com-davecgh-go-spew
@@ -3318,32 +3341,43 @@ share/zulip/integrations or in lib/<...>/site-packages/integrations:
              go-github-com-go-asn1-ber-asn1-ber
              go-github-com-golang-jwt-jwt
              go-github-com-golang-protobuf
+             go-github-com-gomarkdown-markdown
+             go-github-com-google-gops
              go-github-com-google-uuid
+             go-github-com-gorilla-schema
              go-github-com-gorilla-websocket
              go-github-com-hashicorp-errwrap
              go-github-com-hashicorp-go-multierror
              go-github-com-hashicorp-golang-lru
              go-github-com-hashicorp-hcl
+             go-github-com-jeffail-gabs
              go-github-com-jpillora-backoff
              go-github-com-json-iterator-go
              go-github-com-kballard-go-shellquote
              go-github-com-klauspost-compress
              go-github-com-klauspost-cpuid-v2
+             go-github-com-labstack-echo-v4
              go-github-com-magiconair-properties
+             go-github-com-matterbridge-gomatrix
              go-github-com-mattn-go-colorable
              go-github-com-mattn-go-isatty
              go-github-com-mattn-go-runewidth
+             go-github-com-mattn-godown
              go-github-com-mgutz-ansi
+             go-github-com-minio-md5-simd
              go-github-com-minio-sha256-simd
              go-github-com-mitchellh-go-homedir
              go-github-com-mitchellh-mapstructure
              go-github-com-modern-go-concurrent
              go-github-com-modern-go-reflect2
              go-github-com-opentracing-opentracing-go
+             go-github-com-pborman-uuid
              go-github-com-pelletier-go-toml
              go-github-com-pelletier-go-toml-v2
+             go-github-com-philhofer-fwd
              go-github-com-pkg-errors
              go-github-com-pmezard-go-difflib
+             go-github-com-remyoudompheng-bigfft
              go-github-com-rivo-uniseg
              go-github-com-russross-blackfriday
              go-github-com-sirupsen-logrus
@@ -3355,8 +3389,23 @@ share/zulip/integrations or in lib/<...>/site-packages/integrations:
              go-github-com-spf13-viper
              go-github-com-stretchr-testify
              go-github-com-subosito-gotenv
+             go-github-com-tinylib-msgp
              go-github-com-valyala-bytebufferpool
-             go-github-com-vmihailenco-tagparser))
+             go-github-com-valyala-fasttemplate
+             go-github-com-vmihailenco-msgpack-v5
+             go-github-com-vmihailenco-tagparser
+             ;; go.mau.fi
+             go-go-mau-fi-libsignal
+             go-go-mau-fi-whatsmeow
+             ;; lukechampine.com
+             go-lukechampine-com-uint128
+             ;; modernc.org
+             go-modernc-org-cc-v3
+             go-modernc-org-mathutil
+             go-modernc-org-memory
+             go-modernc-org-opt
+             go-modernc-org-strutil
+             go-modernc-org-token))
     (synopsis "Bridge together various messaging networks and protocols")
     (description
      "Relays messages between different channels from various

gnu/packages/mpi.scm

@@ -200,7 +200,7 @@ bind processes, and much more.")
     (propagated-inputs
      ;; hwloc.pc lists libze_loader and libxml2 in
      ;; 'Requires.private' in 'hwloc.pc'.
-     (list level-zero libpciaccess libxml2))
+     (list libpciaccess libxml2))
     (arguments
      (list
       #:configure-flags
@@ -421,7 +421,7 @@ software vendors, application developers and computer science researchers.")
 (define-public openmpi-5
   (package
     (inherit openmpi)
-    (version "5.0.9")
+    (version "5.0.10")
     (source
      (origin
        (method url-fetch)
@@ -447,7 +447,7 @@ software vendors, application developers and computer science researchers.")
            ;; documentation.
            (delete-file-recursively "docs/html")))
        (sha256
-        (base32 "02yqfwv2fn9n0glprkk7dzrkrcnpfwfz5874ydx88w0iadi2gdyz"))))
+        (base32 "1ijc6zbxb49a7dvfs59h74lis3vb5hc1v95qpjyxxr8qq97wrkha"))))
 
     (inputs (modify-inputs inputs
               ;; As of Open MPI 5.0.X, PMIx is used to communicate
@@ -470,7 +470,7 @@ software vendors, application developers and computer science researchers.")
                    "--with-sge"
                    "--disable-static"
 
-                   #$@(if (package? (this-package-input "valgrind"))
+                   #$@(if (this-package-input "valgrind")
                           #~("--enable-memchecker"
                              "--with-valgrind")
                           #~("--without-valgrind"))
@@ -488,9 +488,16 @@ software vendors, application developers and computer science researchers.")
                    (string-append "--with-pmix=" #$(this-package-input "openpmix"))
                    (string-append "--with-prrte=" #$(this-package-input "prrte"))
 
+                   ;; Explicitly activate PSM2 when present. This is required
+                   ;; for autotools to add the -L flag to .la files, that
+                   ;; fixes link-time errors when missing.
+                   #$@(if (this-package-input "psm2")
+                          #~((string-append "--with-psm2=" #$(this-package-input "psm2")))
+                          #~())
+
                    ;; Since 5.x, Infiniband support is provided by ucx.
                    ;; See https://docs.open-mpi.org/en/main/release-notes/networks.html#miscellaneous-network-notes
-                   #$@(if (package? (this-package-input "ucx"))
+                   #$@(if (this-package-input "ucx")
                           #~((string-append "--with-ucx=" #$(this-package-input "ucx")))
                           #~()))
 

gnu/packages/networking.scm

@@ -69,7 +69,7 @@
 ;;; Copyright © 2025 B. Wilson <elaexuotee@wilsonb.com>
 ;;; Copyright © 2024 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2024, 2025 Janneke Nieuwenhuizen <janneke@gnu.org>
-;;; Copyright © 2025 Ashish SHUKLA <ashish.is@lostca.se>
+;;; Copyright © 2025, 2026 Ashish SHUKLA <ashish.is@lostca.se>
 ;;; Copyright © 2025 Jared Klingenberger <jkling@noreply.codeberg.org>
 ;;; Copyright © 2026 Carlos Durán Domínguez <wurt@wurt.eu>
 ;;;
@@ -2041,7 +2041,7 @@ of the same name.")
 (define-public wireshark
   (package
     (name "wireshark")
-    (version "4.6.3")
+    (version "4.6.4")
     (source
      (origin
        (method git-fetch)
@@ -2050,7 +2050,7 @@ of the same name.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0j49gnvc1x37sf7dq3wklzlhp5gihi7d926mmfqb1avyb68n7qjn"))))
+        (base32 "05jivnnlmbbhc6b3r7zdahiw22fvb9r6pg4pc83ascnja49xlyq6"))))
     (build-system qt-build-system)
     (arguments
      (list
@@ -3401,6 +3401,54 @@ notations in use for IPv4 and IPv6 addresses and networks.")
 speedtest.net.")
     (license license:asl2.0)))
 
+(define-public librespeed-cli
+  (package
+    (name "librespeed-cli")
+    (version "1.0.12")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/librespeed/speedtest-cli")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "08x09b3j2qvhnwy8lrbfxqh1lbs64wyqlr4jj6m31b5r2zy90dly"))))
+    (build-system go-build-system)
+    (arguments
+     (list
+      #:install-source? #f
+      #:import-path "github.com/librespeed/speedtest-cli"
+      #:build-flags
+      #~(list (format #f "-ldflags=-X ~s -X ~s"
+                      (string-append "github.com/librespeed/speedtest-cli"
+                                     "/defs.ProgName=librespeed-cli")
+                      (string-append "github.com/librespeed/speedtest-cli"
+                                     "/defs.ProgVersion="
+                                     #$version)))
+      #:phases
+      #~(modify-phases %standard-phases
+          ;; Avoid naming conflict with speedtest-cli package
+          (add-after 'install 'rename-executable
+            (lambda _
+              (with-directory-excursion (string-append #$output "/bin")
+                (rename-file "speedtest-cli" "librespeed-cli")))))))
+    (native-inputs
+     (list go-github-com-briandowns-spinner
+           go-github-com-go-ping-ping
+           go-github-com-gocarina-gocsv
+           go-github-com-sirupsen-logrus
+           go-github-com-urfave-cli-v2
+           go-golang-org-x-sys))
+    (home-page "https://github.com/librespeed/speedtest-cli")
+    (synopsis "Command-line internet speed test tool")
+    (description
+     "Command-line interface for LibreSpeed internet bandwidth testing.
+It functions as a command-line alternative to @url{https://librespeed.org/}.
+It features ping, jitter, download, and upload testing, as well as the ability
+to test using multiple servers in a single run.")
+    (license license:lgpl3)))
+
 (define-public atftp
   (package
     (name "atftp")
@@ -4474,7 +4522,7 @@ powerful route filtering syntax and an easy-to-use configuration interface.")
 (define-public iwd
   (package
     (name "iwd")
-    (version "3.10")
+    (version "3.12")
     (source
      (origin
        (method git-fetch)
@@ -4484,7 +4532,7 @@ powerful route filtering syntax and an easy-to-use configuration interface.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "1dxzz99fwyf1ssjgx57z4nik1xk4nr2ryywq8mpzbvxsdhs82fmb"))))
+         "1c05ayakg8kf9bxqf5857lkflk4mrzllmhz01cpyfpcx5pz71ipg"))))
     (build-system gnu-build-system)
     (inputs
      (list dbus

gnu/packages/nss.scm

@@ -398,7 +398,7 @@ taken from the NSS package and thus ultimately from the Mozilla project.")
 (define-public nsncd
   (package
     (name "nsncd")
-    (version "1.5.1")
+    (version "1.5.2")
     (source
      (origin
        (method git-fetch)
@@ -407,7 +407,7 @@ taken from the NSS package and thus ultimately from the Mozilla project.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1qiphwlwbnni2vfqjbdzv2a1qgqv2ycmygmyrbx8pgaak9gl5hfi"))))
+        (base32 "1kzwd5vlz5paal8k79dkamjqczz7k8azyc8zwjyhalcxzsjkdn0w"))))
     (build-system cargo-build-system)
     (arguments
      `(#:cargo-test-flags

gnu/packages/package-management.scm

@@ -21,7 +21,7 @@
 ;;; Copyright © 2021, 2022, 2023, 2025 Maxim Cournoyer <maxim@guixotic.coop>
 ;;; Copyright © 2021 John Kehayias <john.kehayias@protonmail.com>
 ;;; Copyright © 2022, 2023 Zhu Zihao <all_but_last@163.com>
-;;; Copyright © 2023 jgart <jgart@dismail.de>
+;;; Copyright © 2023, 2025-2026 jgart <jgart@dismail.de>
 ;;; Copyright © 2023 Wojtek Kosior <koszko@koszko.org>
 ;;; Copyright © 2023 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
 ;;; Copyright © 2024 Arun Isaac <arunisaac@systemreboot.net>
@@ -31,6 +31,7 @@
 ;;; Copyright © 2025 Tomás Ortín Fernández <quanrong@mailbox.org>
 ;;; Copyright © 2025-2026 Sharlatan Hellseher <sharlatanus@gmail.com>
 ;;; Copyright © 2026 Carlos Durán Domínguez <wurt@wurt.eu>
+;;; Copyright © 2025 unwox <me@unwox.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -797,6 +798,47 @@ with the @command{module} command commonly found on @acronym{HPC,
 high-performance computing} clusters.")
     (license license:gpl3+)))
 
+(define-public toys
+  (package
+    (name "toys")
+    (version "0.1.0")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                     (url "https://git.sr.ht/~whereiseveryone/toys")
+                     (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "169jxh5knp5f2y9wbnc454jjdvvyqb5r0ydv3qkpm332vr0cl6p9"))))
+    (build-system guile-build-system)
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'register-guix-extension
+            (lambda* (#:key outputs #:allow-other-keys)
+              (let ((ext-path (string-append #$output "/share/guix/extensions")))
+                (mkdir-p ext-path)
+                (copy-recursively "guix/extensions" ext-path))))
+          (add-after 'register-guix-extension 'clean-up
+            (lambda* _
+              (delete-file "channels.scm")
+              (delete-file-recursively "guix"))))))
+    (native-inputs (list guile-3.0-latest))
+    (inputs
+     (list guile-json-4
+           guile-readline
+           guile-sqlite3
+           guix))
+    (native-search-paths (list $GUIX_EXTENSIONS_PATH))
+    (home-page "https://toys.whereis.social/")
+    (synopsis "Search engine for Guix channels")
+    (description "Toys is a search engine for collecting and displaying Guix
+channel data found across the internet.  Toys provides a command-line
+interface for interacting with the application.")
+    (license license:gpl3+)))
+
 (define-public guix-xsearch
   (package
     (name "guix-xsearch")
@@ -2578,14 +2620,14 @@ the boot loader configuration.")
 (define-public flatpak
   (package
     (name "flatpak")
-    (version "1.16.3")
+    (version "1.16.5")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://github.com/flatpak/flatpak/releases/download/"
                            version "/flatpak-" version ".tar.xz"))
        (sha256
-        (base32 "0nyg2byczlpw25jm7508g06n7z4247ja6v18hz0803llz3sx6srx"))
+        (base32 "0mn1rf1q0r8bhqkm84f1vj3lvl63ccalnc4p98k6qxj92rcfj853"))
        (patches
         (search-patches "flatpak-fix-fonts-icons.patch"
                         "flatpak-fix-icon-validation.patch"