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Author SHA1 Message Date
Ricardo Wurmus 09ad7636e5 gnu: ant-bootstrap: Add hack to build on i686.
* gnu/packages/java-bootstrap.scm (ant-bootstrap)[arguments]: Conditionally
patch isFile checks.

Change-Id: If09594e301dc4691f564e197499acc7d7af71706
2026-04-16 14:18:34 +02:00
Ricardo Wurmus 425cb40fc2 gnu: r-seurat: Conditionally skip a test on 32-bit platforms.
* gnu/packages/cran.scm (r-seurat)[arguments]: On 32-bit platforms skip a
test.

Change-Id: I9c5eb3faed4bd3695fe81200447f201aa8081228
2026-04-16 14:18:34 +02:00
Ricardo Wurmus 508e4bafa6 gnu: r-bpcells: Build with SSE2 for on x86 32-bit platforms.
* gnu/packages/bioinformatics.scm (r-bpcells)[arguments]: Conditionally add
phase 'require-sse2.

Change-Id: I4927d9701e47dc34cc435d24c64a3043ad984f0d
2026-04-16 14:18:34 +02:00
Ricardo Wurmus c1ddc90bdf gnu: r-bpcells: Update to 0.3.1.
* gnu/packages/bioinformatics.scm (r-bpcells): Update to 0.3.1.
[arguments]: Do not patch r/configure.

Change-Id: Ia16297dc02bfecaf353de04452026df98ea5c826
2026-04-16 14:18:34 +02:00
Ricardo Wurmus fef2bae2b5 gnu: r-actuar: Conditionally skip some tests on 32-bit platforms.
* gnu/packages/cran.scm (r-actuar)[arguments]: On 32-bit platforms skip some
tests.

Change-Id: Iad305e0819f919ace9ab9fe7d20357981e2a226a
2026-04-16 14:18:33 +02:00
Ricardo Wurmus 60d405928e gnu: r-expint: Conditionally skip test on 32-bit platforms.
* gnu/packages/cran.scm (r-expint)[arguments]: On 32-bit platforms skip one
test.

Change-Id: Ifa97d90cfcf65fbdb9c920515f32c383c61d1ae6
2026-04-16 14:18:33 +02:00
Ricardo Wurmus 39c975659f gnu: r-lme4: Conditionally skip test on 32-bit platforms.
This is really questionable.  The test suite freezes in several places on
i686-linux, and it's not clear why.  It would be preferable to identify the
cause and fix that for good, but perhaps we can revisit this once the state of
R on i686-linux has improved.

* gnu/packages/cran.scm (r-lme4)[arguments]: On 32-bit platforms skip several
tests.

Change-Id: I67e963ec29cb00f66c122817898f0c6db330307f
2026-04-16 14:18:33 +02:00
Ricardo Wurmus 1129b721bd gnu: r-universalmotif: Conditionally skip test on 32-bit platforms.
* gnu/packages/bioconductor.scm (r-universalmotif)
[arguments]: On 32-bit platforms skip one test.

Change-Id: I66c046c20b0eefbaeb90c5fbf86233c175c096b4
2026-04-16 14:18:33 +02:00
Ricardo Wurmus 163d288dcf gnu: r-ballgown: Adjust for testthat compatibility.
* gnu/packages/bioconductor.scm (r-ballgown)[arguments]: Add phase
'testthat-compatibility.

Change-Id: Id8d931ee79b55b82e977eb3822537f80b55108bf
2026-04-16 14:18:33 +02:00
Ricardo Wurmus f2f6acc0c0 gnu: r-s2: Conditionally skip tests on 32-bit platforms.
* gnu/packages/cran.scm (r-s2)[arguments]: On 32-bit platforms skip some
tests.

Change-Id: Ie1ce57ad4def078c58f33ceec21338b3fb1176f7
2026-04-16 14:18:33 +02:00
Ricardo Wurmus cc58bae6e3 gnu: r-collapse: Conditionally skip tests on 32-bit platforms.
* gnu/packages/cran.scm (r-collapse)[arguments]: On 32-bit platforms skip some
tests.

Change-Id: Idd64fe930fba5b4599324ac0757bad7b0cba695f
2026-04-16 14:18:33 +02:00
Ricardo Wurmus b18d485cb5 gnu: r-cards: Conditionally skip one test.
* gnu/packages/cran.scm (r-cards)[arguments]: On 32-bit platforms skip one
test.

Change-Id: I7f0ade42f51290a862412dd3e280b6c42a81f654
2026-04-16 14:18:33 +02:00
Ricardo Wurmus d30e6043e7 gnu: r-ggplot2: Conditionally skip one test.
* gnu/packages/cran.scm (r-ggplot2)[arguments]: On 32-bit platforms skip one
test.

Change-Id: Icc6d0d6046a18ed24e91e15294c49fb28b4cc12e
2026-04-16 14:18:32 +02:00
Ricardo Wurmus 34c4e062e3 gnu: r-biocstyle: Do not build self-contained reports on 32-bit platforms.
* gnu/packages/bioconductor.scm (r-biocstyle)[arguments]: Conditionally add
phase 'prevent-pandoc-segfault.

Change-Id: I84ea57c44ceedb21e03050b4c48c9c05beedc7d7
2026-04-16 14:18:32 +02:00
Ricardo Wurmus 53dd0b21f4 gnu: proj-9.3: Fix build on 32-bit platforms.
* gnu/packages/geo.scm (proj-9.3)[arguments]: Conditionally add phase
'patch-tests to skip broken tests on 32-bit platforms.

Change-Id: I953489a7ac6a6c577d898e677df77d4acf4499c8
2026-04-16 14:18:32 +02:00
Ricardo Wurmus f7f133f29d gnu: proj: Fix build on 32-bit platforms.
* gnu/packages/geo.scm (proj)[arguments]: Conditionally add phase
'patch-tests to skip broken tests on 32-bit platforms.

Change-Id: Idf6339181f9bad128b060c2178a07735abba1e0b
2026-04-16 14:18:32 +02:00
Ricardo Wurmus e259e9401f gnu: netcdf: Fix build on 32-bit platforms.
* gnu/packages/maths.scm (netcdf)[arguments]: Conditionally pass CFLAGS to
ignore incompatible pointer types; conditionally update 'fix-tests phase to
skip two broken tests on 32-bit platforms.

Change-Id: Id5d149038275c152bbb30f0b155a2c2f7e05a76e
2026-04-16 14:18:32 +02:00
Ricardo Wurmus 26bf944f93 gnu: geos: Conditionally skip tests.
* gnu/packages/geo.scm (geos)[arguments]: Conditionally add phase
'disable-broken-tests on 32-bit platforms.

Change-Id: I9367519716ef309cb6f33e7455d4472ff5293478
2026-04-16 14:18:32 +02:00
Ricardo Wurmus c767b89d53 gnu: r-coro: Conditionally skip one test.
* gnu/packages/cran.scm (r-coro)[arguments]: On 32-bit platforms skip one
test.

Change-Id: I828ec4eae53df79ed476bd761905b78ae12e45ee
2026-04-16 14:18:32 +02:00
Ricardo Wurmus e5bc38ed46 gnu: r-timechange: Conditionally skip one test.
* gnu/packages/cran.scm (r-timechange)[arguments]: On 32-bit platforms skip one
test.

Change-Id: Idb8298941382bc2447f780e17a125ed39fe889f5
2026-04-16 14:18:32 +02:00
Ricardo Wurmus a5889682ea gnu: r-bit64: Conditionally skip two tests.
* gnu/packages/cran.scm (r-bit64)[arguments]: On 32-bit platforms skip two
tests.

Change-Id: Iac69d9b9ab479e3756977b6669e4a9f2802233a0
2026-04-16 14:18:31 +02:00
Ricardo Wurmus 771d3a8237 gnu: r-data-table: Fix a test on 32 bit machines.
* gnu/packages/cran.scm (r-data-table)[arguments]: Conditionally add phase
'fix-bad-test.

Change-Id: Iad9887debcb8a3e65e8495faae778266e42f1ead
2026-04-16 14:18:31 +02:00
Ricardo Wurmus 2c15d5dd96 gnu: r-bit64: Update home-page field.
The home page here was for the ff package, not bit64.

* gnu/packages/cran.scm (r-bit64)[home-page]: Update to CRAN project page.

Change-Id: Idcc1972bfe594185cdee29d8b4e4e0259941e784
2026-04-16 14:18:31 +02:00
Ricardo Wurmus 6038ca0133 gnu: r-accept: Update to 1.0.2.
* gnu/packages/cran.scm (r-accept): Update to 1.0.2.
[propagated-inputs]: Add r-hardhat, r-tibble, r-tidyselect, r-vctrs, and r-vetiver.
[native-inputs]: Add r-spelling and r-testthat.

Change-Id: I6b4782f8beb8e23f5e8987e1f00f34edec59c4b5
2026-04-16 14:18:31 +02:00
Ricardo Wurmus a0445cebab gnu: Add r-vetiver.
* gnu/packages/cran.scm (r-vetiver): New variable.

Change-Id: Ia60cb1ca09daf342a2b8df826ed5306ea51a284f
2026-04-16 14:18:31 +02:00
Ricardo Wurmus 682c9758ab gnu: Add r-rapidoc.
* gnu/packages/cran.scm (r-rapidoc): New variable.

Change-Id: Ia43f969774fbaf1bdff69767d872ab113583c5db
2026-04-16 14:18:31 +02:00
Ricardo Wurmus e8ea5be38b gnu: Add r-pins.
* gnu/packages/cran.scm (r-pins): New variable.

Change-Id: Ie69fde0b4252d7086a6dadab4645b7885b11f18f
2026-04-16 14:18:31 +02:00
Ricardo Wurmus 8e24b5c554 gnu: Add r-bundle.
* gnu/packages/cran.scm (r-bundle): New variable.

Change-Id: I7694f43e4aa4ebc421a0e946d5d3ddafd30aa3ef
2026-04-16 14:18:31 +02:00
Ricardo Wurmus f4d6e90ef0 gnu: r-bbotk: Update to 1.10.0.
* gnu/packages/cran.scm (r-bbotk): Update to 1.10.0.
[native-inputs]: Remove r-processx, r-redux, and r-rush.

Change-Id: I3add7f5c00d752277dfae3199a9b37509869485c
2026-04-16 14:18:31 +02:00
Ricardo Wurmus 46197b7631 gnu: Add r-embed.
* gnu/packages/cran.scm (r-embed): New variable.

Change-Id: I33d35f8c58545f53c346cd656782c4ed526d17b4
2026-04-16 14:18:30 +02:00
Ricardo Wurmus 8bfc6bcf6c gnu: r-yardstick: Update to 1.4.0.
* gnu/packages/cran.scm (r-yardstick): Update to 1.4.0.
[properties]: Record updater-ignored-native-inputs.
[native-inputs]: Add r-epir, r-handtill2001, and r-orf.

Change-Id: I27ce3c780b776ff985df7eb72473011cbd5e93d3
2026-04-16 14:18:30 +02:00
Ricardo Wurmus 0c1b7a1bc5 gnu: Add r-orf.
* gnu/packages/cran.scm (r-orf): New variable.

Change-Id: I422f1fa4341b6835d2fd57057c1e1df49a0ec335
2026-04-16 14:18:30 +02:00
Ricardo Wurmus cfb1e1e1ce gnu: Add r-epir.
* gnu/packages/cran.scm (r-epir): New variable.

Change-Id: Ic2eba444f2f3cdac8420bfa6b391e763f62c7b4d
2026-04-16 14:18:30 +02:00
Ricardo Wurmus dd4fdcf78b gnu: Add r-handtill2001.
* gnu/packages/cran.scm (r-handtill2001): New variable.

Change-Id: I09e71b5286356b8c6d0cda0b6914e6af07074145
2026-04-16 14:18:30 +02:00
Ricardo Wurmus 48ba359b1e gnu: Add r-cereal.
* gnu/packages/cran.scm (r-cereal): New variable.

Change-Id: I3b5c8854f49c732cc003529e8a82f4a37bd6c5bf
2026-04-16 14:18:30 +02:00
Ricardo Wurmus a0d0ebe117 gnu: r-s4vectors: Update to 0.48.1.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.48.1.

Change-Id: I8b856c0e0679262ec5be2a1ae655fd2aa9f6d263
2026-04-16 14:18:30 +02:00
Ricardo Wurmus c72541ebf1 gnu: r-biocviews: Update to 1.78.2.
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.78.2.

Change-Id: I3aa91454ea13045bb4f4ebe36700c5c36ee28816
2026-04-16 14:18:30 +02:00
Ricardo Wurmus 7e9aa9b851 gnu: r-wiggleplotr: Update to 1.34.1.
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.34.1.

Change-Id: I3e9df308ff374a62d2ae41eed6df7297411ee665
2026-04-16 14:18:29 +02:00
Ricardo Wurmus 6784e48652 gnu: r-enmix: Update to 1.46.2.
* gnu/packages/bioconductor.scm (r-enmix): Update to 1.46.2.

Change-Id: I04675d3351d71cf7132918f3840a236ba64ad2c0
2026-04-16 14:18:29 +02:00
Ricardo Wurmus 577348891d gnu: r-delayedarray: Update to 0.36.1.
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.36.1.

Change-Id: I36e6c48575213cbdac4c7351bfd5fc49d2ca1faf
2026-04-16 14:18:29 +02:00
Ricardo Wurmus 87cd5dab52 gnu: r-stars: Update to 0.7-2.
* gnu/packages/cran.scm (r-stars): Update to 0.7-2.

Change-Id: If5583378486a10f644dd7b9098c332f290d4a765
2026-04-16 14:18:29 +02:00
Ricardo Wurmus f887d7f5a7 gnu: r-pbdmpi: Update to 0.5-5.
* gnu/packages/cran.scm (r-pbdmpi): Update to 0.5-5.

Change-Id: I34ade16a4af9530a59aaf0698c1baf82262a1a9f
2026-04-16 14:18:29 +02:00
Ricardo Wurmus 4640210f65 gnu: r-mlr3: Update to 1.6.0.
* gnu/packages/cran.scm (r-mlr3): Update to 1.6.0.

Change-Id: I553b49832b9c56d43501edce7858abbd5c1062e7
2026-04-16 14:18:29 +02:00
Ricardo Wurmus 9e1463d608 gnu: r-lobstr: Update to 1.2.1.
* gnu/packages/cran.scm (r-lobstr): Update to 1.2.1.

Change-Id: If088ac344520b04407c7b6f0e32fa4fb02a4cda8
2026-04-16 14:18:29 +02:00
Ricardo Wurmus ab0c33e246 gnu: r-igraph: Update to 2.2.3.
* gnu/packages/cran.scm (r-igraph): Update to 2.2.3.

Change-Id: I23dfd5b2a7685014b7aa86cf46b0a999081cce3e
2026-04-16 14:18:29 +02:00
Ricardo Wurmus f3b5ecb37f gnu: r-cpp11: Update to 0.5.4.
* gnu/packages/cran.scm (r-cpp11): Update to 0.5.4.

Change-Id: Ib0f6d7898c26fa5b5a38a2da27161cd6e954f7cd
2026-04-16 14:18:28 +02:00
Ricardo Wurmus 6d7da84ecb gnu: r-spatstat: Update to 3.6-0.
* gnu/packages/cran.scm (r-spatstat): Update to 3.6-0.

Change-Id: I05e18e899f11b9ed3227fd0234d97274dfa8b291
2026-04-16 14:18:28 +02:00
Ricardo Wurmus 0df03cd67b gnu: r-hardhat: Update to 1.4.3.
* gnu/packages/cran.scm (r-hardhat): Update to 1.4.3.

Change-Id: I92526d995ef4913a20ff879e99b079e27c7d0ef4
2026-04-16 14:18:28 +02:00
Ricardo Wurmus 20b277789b gnu: r-quanteda: Update to 4.4.
* gnu/packages/cran.scm (r-quanteda): Update to 4.4.

Change-Id: I72e65e0d8a40b9a46a3353a87663c85b2dc7e4fb
2026-04-16 14:18:28 +02:00
Ricardo Wurmus d0f30763af gnu: r-sccore: Update to 1.0.7.
* gnu/packages/cran.scm (r-sccore): Update to 1.0.7.
[propagated-inputs]: Remove r-seurat.

Change-Id: Ib8b66b4c26c2f06965d64f14ac561b319a422b2f
2026-04-16 14:18:28 +02:00
Ricardo Wurmus 9215c2e4fe gnu: r-spamm: Update to 4.6.65.
* gnu/packages/cran.scm (r-spamm): Update to 4.6.65.

Change-Id: Id033c8d33ca69a7f44a7b6dd9806e534778b4cd0
2026-04-16 14:18:28 +02:00
Ricardo Wurmus 4bc5e6b7a0 gnu: r-rio: Update to 1.3.0.
* gnu/packages/cran.scm (r-rio): Update to 1.3.0.
[native-inputs]: Remove r-jpeg.

Change-Id: Ie60d8e73148286b9cb0f1f5f2405f76aa3d8d22b
2026-04-16 14:18:28 +02:00
Ricardo Wurmus 32bdc39622 gnu: r-nanonext: Update to 1.8.2.
* gnu/packages/cran.scm (r-nanonext): Update to 1.8.2.

Change-Id: I2587c0be9c892de4379e9f8b50eb9ec33df97f2f
2026-04-16 14:18:27 +02:00
Ricardo Wurmus 43cf547c88 gnu: r-ucminf: Update to 1.2.3.
* gnu/packages/cran.scm (r-ucminf): Update to 1.2.3.

Change-Id: I486976827be08ec03c45fef94b745befde3f6907
2026-04-16 14:18:27 +02:00
Ricardo Wurmus 8a258c6d3d gnu: r-statsexpressions: Update to 1.7.4.
* gnu/packages/cran.scm (r-statsexpressions): Update to 1.7.4.

Change-Id: I0b79a241393d26a8c026088b0e424b38e4472c9e
2026-04-16 14:18:27 +02:00
Ricardo Wurmus 0186ba19ff gnu: r-recipes: Update to 1.3.2.
* gnu/packages/cran.scm (r-recipes): Update to 1.3.2.

Change-Id: Id2e16bce4db896983b3185c1c5b2e23196a793b5
2026-04-16 14:18:27 +02:00
Ricardo Wurmus baea13f534 gnu: r-cvxr: Update to 1.8.2.
* gnu/packages/cran.scm (r-cvxr): Update to 1.8.2.

Change-Id: I2e8bda89edb439a667eb199abf7ae15b593b3071
2026-04-16 14:18:27 +02:00
Ricardo Wurmus c74520f47a gnu: r-circlize: Update to 0.4.18.
* gnu/packages/cran.scm (r-circlize): Update to 0.4.18.

Change-Id: I161c5eef8f7db52620ff87fc298ed5771cc914f8
2026-04-16 14:18:27 +02:00
Ricardo Wurmus 602cd07f0d gnu: r-geosphere: Update to 1.6-8.
* gnu/packages/cran.scm (r-geosphere): Update to 1.6-8.
[propagated-inputs]: Remove r-sp.

Change-Id: Ibb73b0b53cd78de120c604d75a0549820eb3200e
2026-04-16 14:18:27 +02:00
Ricardo Wurmus 1217281391 gnu: r-magrittr: Update to 2.0.5.
* gnu/packages/cran.scm (r-magrittr): Update to 2.0.5.
[native-inputs]: Add r-rlang.

Change-Id: Icd245b27401f4f0ba1c591ae1dd7a8e651201405
2026-04-16 14:18:27 +02:00
Ricardo Wurmus fa167200ac gnu: r-ellipsis: Update to 0.3.3.
* gnu/packages/cran.scm (r-ellipsis): Update to 0.3.3.

Change-Id: I098570b2c7e05c2a67c3a91e4be4e222cb7deb15
2026-04-16 14:18:26 +02:00
Ricardo Wurmus 8a96d0e080 gnu: r-lazyeval: Update to 0.2.3.
* gnu/packages/cran.scm (r-lazyeval): Update to 0.2.3.
[propagated-inputs]: Add r-rlang.

Change-Id: I29e122307aa6b2e67258af2ca96cfc873fca973d
2026-04-16 14:18:26 +02:00
Ricardo Wurmus a5c7de10dd gnu: r-fpeek: Update to 0.2.1.
* gnu/packages/cran.scm (r-fpeek): Update to 0.2.1.

Change-Id: I65cec23ef7def6a4dd07b10345a33ed87465be90
2026-04-16 14:18:26 +02:00
Ricardo Wurmus b7eb596b75 gnu: r-fingerprint: Update to 3.5.10.
* gnu/packages/cran.scm (r-fingerprint): Update to 3.5.10.

Change-Id: Id7412db399a6bf6254f2ee154e3150c78486acab
2026-04-16 14:18:26 +02:00
Ricardo Wurmus cfb14a79ef gnu: r-rush: Update to 1.0.1.
* gnu/packages/cran.scm (r-rush): Update to 1.0.1.

Change-Id: I8862fb80bbace1718d50a326220665519449d556
2026-04-16 14:18:26 +02:00
Ricardo Wurmus 77741f8a3d gnu: r-rlang: Update to 1.2.0.
* gnu/packages/cran.scm (r-rlang): Update to 1.2.0.

Change-Id: Ibc781c6de7a2e3c0bb0ca4e0b1242f6dd68ac590
2026-04-16 14:18:26 +02:00
Ricardo Wurmus eabb9f6b9f gnu: r-ggstatsplot: Update to 0.13.6.
* gnu/packages/cran.scm (r-ggstatsplot): Update to 0.13.6.

Change-Id: If4bf6c55a2bde9d629f7a9fc33456f256da8302d
2026-04-16 14:18:26 +02:00
Ricardo Wurmus d0a7a1f1f1 gnu: r-dplyr: Update to 1.2.1.
* gnu/packages/cran.scm (r-dplyr): Update to 1.2.1.

Change-Id: I3821473e4964b0d367915ad85c5b47927e35ee48
2026-04-16 14:18:26 +02:00
Ricardo Wurmus 00ccd3eeea gnu: r-cftime: Update to 1.7.3.
* gnu/packages/cran.scm (r-cftime): Update to 1.7.3.

Change-Id: I621d2a7cc6646369e963db137f089a0236b16199
2026-04-16 14:18:26 +02:00
Ricardo Wurmus f518b950c1 gnu: r-backports: Update to 1.5.1.
* gnu/packages/cran.scm (r-backports): Update to 1.5.1.

Change-Id: Ia363be468b5888a4d1b5d390a8a7c7eb07ea9cc1
2026-04-16 14:18:25 +02:00
Ricardo Wurmus 42a1a2172e gnu: r-ggplot2: Disable one failing test.
* gnu/packages/cran.scm (r-ggplot2)[arguments]: Disable a failing test.

Change-Id: I41c5ec8790148f7ffe1397d3b9694f1cd8e0c739
2026-04-16 14:18:25 +02:00
Ricardo Wurmus 9c11c794d8 gnu: Add r-timereg.
* gnu/packages/cran.scm (r-timereg): New variable.

Change-Id: Ifb43c8f624ac79bb16361912ccf9cbdb623356ab
2026-04-16 14:18:25 +02:00
Ricardo Wurmus 42ac4eb3fa gnu: r-lava: Update to 1.9.0.
* gnu/packages/cran.scm (r-lava): Update to 1.9.0.
[native-inputs]: Add r-vdiffr.
[arguments]: Disable some failing tests.

Change-Id: I6025e511e46f8d7aa6b3864b411e5aacd86a06d0
2026-04-16 14:18:25 +02:00
Ricardo Wurmus 1bf6dde0d8 gnu: r-flames: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-flames)[arguments]: Remove
phase 'disable-some-tests; specify #:skipped-tests instead.

Change-Id: I75024c6b9c5316e1b4bef80c5e60d77699b71e9b
2026-04-16 14:18:25 +02:00
Ricardo Wurmus c8c2f12858 gnu: r-ncdfflow: Enable all tests.
* gnu/packages/bioconductor.scm (r-ncdfflow)[arguments]: Remove phase
'delete-bad-tests.

Change-Id: I5c4c64f992b33af1ecaa42b833a8f2cb3f2b47d6
2026-04-16 14:18:25 +02:00
Ricardo Wurmus 83a6b8589e gnu: r-flowclust: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-flowclust)[arguments]: Remove
phase 'delete-bad-tests; specify #:skipped-tests instead; disable one more
test.

Change-Id: I18369d410ad9cff4db7afcb15fd5292b3c6c0177
2026-04-16 14:18:25 +02:00
Ricardo Wurmus bad269b657 gnu: r-variantfiltering: Enable all tests.
* gnu/packages/bioconductor.scm (r-variantfiltering)[arguments]: Remove phase
'delete-bad-tests.

Change-Id: I76ef169743ecbd5c75fb115ab5adf8c46128d068
2026-04-16 14:18:25 +02:00
Ricardo Wurmus 68adb129ed gnu: r-beachmat: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-beachmat)[arguments]: Remove
phase 'delete-bad-tests; specify #:skipped-tests
instead.

Change-Id: I17f4999f3747f4e72015ae64872e2c877a157267
2026-04-16 14:18:25 +02:00
Ricardo Wurmus 6e7ae215a8 gnu: r-rhdf5lib: Use G-expressions and fix test instead of disabling it.
* gnu/packages/bioconductor.scm (r-rhdf5lib)[arguments]: Use G-expressions;
fix library version check instead of disabling the test.

Change-Id: I78e8cfd9d2588517b0911dde5fc8aa53d4f67892
2026-04-16 14:18:24 +02:00
Ricardo Wurmus 321f4a6b8f gnu: r-sgseq: Enable all tests.
* gnu/packages/bioconductor.scm (r-sgseq)[arguments]: Remove phase
'delete-bad-tests.

Change-Id: I25cfd6620b6573057c161200bd5fad99a19e2bdd
2026-04-16 14:18:24 +02:00
Ricardo Wurmus 75c3255f9c gnu: r-metagenomeseq: Enable all tests.
* gnu/packages/bioconductor.scm (r-metagenomeseq)[arguments]: Remove phase
'delete-bad-tests.

Change-Id: I17d0d965b6d7702dfd6eb24eef288a51915aa3f6
2026-04-16 14:18:24 +02:00
Ricardo Wurmus 0b5f9d29ac gnu: r-graph: Enable tests.
* gnu/packages/bioconductor.scm (r-graph)[arguments]: Enable tests.

Change-Id: I9307f27a1e36e439b3d0c5680faa558981dc5d3a
2026-04-16 14:18:24 +02:00
Ricardo Wurmus 267dcb3fac gnu: r-summarizedexperiment: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-summarizedexperiment)[arguments]: Remove
phase 'delete-bad-tests; specify #:test-directory and #:skipped-tests
instead.

Change-Id: I6229ec548d21f30534f9d279b3aae8847e55a77e
2026-04-16 14:18:24 +02:00
Ricardo Wurmus 7ea19ce41b gnu: r-batchelor: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-batchelor)[arguments]: Remove phase
'delete-bad-tests; specify #:skipped-tests instead.

Change-Id: Icd8aaae97130eed2e3c1b1629ac1dd9d18287fee
2026-04-16 14:18:24 +02:00
Ricardo Wurmus 85f2e629ff gnu: r-biocsingular: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-biocsingular)[arguments]: Remove phase
'delete-bad-tests; specify #:skipped-tests instead.

Change-Id: I8b8f91562233c9cca180eeda50f5d6dc4bc1cd37
2026-04-16 14:18:24 +02:00
Ricardo Wurmus 235fc028b6 gnu: r-glmgampoi: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-glmgampoi)[arguments]: Remove phase
'delete-bad-tests; specify #:skipped-tests instead; enable tests.

Change-Id: I5de95bf59482d706bf80bb6fc4cdcf6da89d2afd
2026-04-16 14:18:24 +02:00
Ricardo Wurmus b10183d56c gnu: r-variantannotation: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-variantannotation)[arguments]: Remove phase
'delete-bad-tests; specify #:test-directory and #:skipped-tests instead.

Change-Id: I17532f8a6e23b52591f0593677e8cd88aacbfc23
2026-04-16 14:18:24 +02:00
Ricardo Wurmus fd70593d4d gnu: r-rhdf5: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-rhdf5)[arguments]: Remove phase
'delete-bad-tests; specify #:skipped-tests instead; enable tests.

Change-Id: I2a440a41b6d527c5c91786345db49532fdca5b2c
2026-04-16 14:18:23 +02:00
Ricardo Wurmus b342b5fed2 gnu: r-regioner: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-regioner)[arguments]: Remove phase
'delete-bad-tests; specify #:skipped-tests instead.

Change-Id: Ic90c620653ffa6d2ad6eab4ded05e4bbfe62d279
2026-04-16 14:18:23 +02:00
Ricardo Wurmus c28d458561 gnu: r-msnbase: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-msnbase)[arguments]: Remove phase
'delete-bad-tests; specify #:skipped-tests instead.

Change-Id: Icb2170c300d80dc5f955b4ff1b97f1e33385a7c2
2026-04-16 14:18:23 +02:00
Ricardo Wurmus 43ee8d6607 gnu: r-genomicdatacommons: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-genomicdatacommons)[arguments]: Remove phase
'delete-bad-tests; specify #:skipped-tests instead.

Change-Id: I02a6f73db89104c90e6a4301240a1fd20e35a636
2026-04-16 14:18:23 +02:00
Ricardo Wurmus 07683d78f7 gnu: r-escape: Enable all tests.
* gnu/packages/bioconductor.scm (r-escape)[arguments]: Remove phase
'delete-bad-tests.

Change-Id: I6d0af6daaed7b5c142ccfdfc162ba57968d1ce17
2026-04-16 14:18:23 +02:00
Ricardo Wurmus 9aaf1ee2de gnu: r-category: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-category)[arguments]: Remove phase
'delete-bad-tests; specify #:test-directory and #:skipped-tests instead.

Change-Id: If573e4ea497fdd1f3654433d2854f0a821455bd6
2026-04-16 14:18:23 +02:00
Ricardo Wurmus e2a7eded3f gnu: r-treeio: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-treeio)[arguments]: Remove phase
'delete-bad-tests; specify #:skipped-tests instead; enable more tests.

Change-Id: I55fccf144c233bfd4115b9201c1550e9d477e6a4
2026-04-16 14:18:23 +02:00
Ricardo Wurmus f9b627d13d gnu: r-derfinder: Enable all tests.
* gnu/packages/bioconductor.scm (r-derfinder)[arguments]: Remove phase
'delete-bad-tests.

Change-Id: Ib4e5e8557209b5a46b48e77c52c6355676b3e577
2026-04-16 14:18:23 +02:00
Ricardo Wurmus 2069c7f09e gnu: r-bumphunter: Disable tests instead of patching them.
After patching we didn't run any tests anyway.

* gnu/packages/bioconductor.scm (r-bumphunter)[arguments]: Remove phase
'delete-bad-tests; disable tests instead.

Change-Id: I6ba13013c6038b272204ae4191111714d835be05
2026-04-16 14:18:23 +02:00
Ricardo Wurmus 2b41447efd gnu: r-txdbmaker: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-txdbmaker)[arguments]: Remove phase
'delete-bad-tests; specify #:skipped-tests instead.

Change-Id: I35e1fb2dce920cb0a59a063eb2b511b636e46546
2026-04-16 14:18:22 +02:00
Ricardo Wurmus 6e7d1b5e4c gnu: r-scrapper: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-scrapper)[arguments]: Remove phase
'disable-bad-tests; specify #:skipped-tests instead.

Change-Id: I25b29604508732e64a7efb72b9635e7bc8685356
2026-04-16 14:18:22 +02:00
Ricardo Wurmus fb45558493 gnu: r-plyranges: Enable all tests.
* gnu/packages/bioconductor.scm (r-plyranges)[arguments]: Remove phase
'disable-bad-tests.

Change-Id: I7539e3c6f8ed26a66bf9d4ef65ecb11bee74421d
2026-04-16 14:18:22 +02:00
Ricardo Wurmus c2f81ec3cb gnu: r-transcriptr: Enable all tests.
* gnu/packages/bioconductor.scm (r-transcriptr)[arguments]: Remove phase
'disable-bad-tests.

Change-Id: Ic0781089808a2468797d03e968aa696553409801
2026-04-16 14:18:22 +02:00
Ricardo Wurmus 2aa8e98b8c gnu: r-tcgautils: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-tcgautils)[arguments]: Remove phase
'disable-bad-tests; specify #:skipped-tests instead.

Change-Id: I29a788dc229c599207d89d7f4dbd49c3c9f06f1e
2026-04-16 14:18:22 +02:00
Ricardo Wurmus 2dccc15f1d gnu: r-screpertoire: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-screpertoire)[arguments]: Remove phase
'disable-bad-tests; specify #:skipped-tests instead.

Change-Id: Ieac662ca919889a71861cb6b1f08febab2487f54
2026-04-16 14:18:22 +02:00
Ricardo Wurmus eb32d1bb83 gnu: r-chippeakanno: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-chippeakanno)[arguments]: Remove phase
'disable-bad-tests; specify #:skipped-tests instead.

Change-Id: Id7e7cd02d1b0b02f62022b9d55e69c867200e213
2026-04-16 14:18:22 +02:00
Ricardo Wurmus 16f703f4f3 gnu: r-msnid: Enable all tests.
* gnu/packages/bioconductor.scm (r-msnid)[arguments]: Remove phase
'disable-bad-tests.

Change-Id: Iaf459f89d1f6d82a486a0dcd860cff746ee140a0
2026-04-16 14:18:22 +02:00
Ricardo Wurmus 7118c74599 gnu: r-mosdef: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-mosdef)[arguments]: Remove phase
'disable-bad-tests; specify #:skipped-tests instead.

Change-Id: Iadf53cbebf8e30b1cd8a4a793a7853b01318de39
2026-04-16 14:18:22 +02:00
Ricardo Wurmus 96d10fcf05 gnu: r-h5mread: Enable all tests.
* gnu/packages/bioconductor.scm (r-h5mread)[arguments]: Remove phase
'disable-bad-tests.

Change-Id: I8a20a311a4c8c2177c07ab5d0b59c8ea5e369c73
2026-04-16 14:18:21 +02:00
Ricardo Wurmus 025efb94b5 gnu: r-immapex: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-immapex)[arguments]: Remove phase
'skip-bad-tests; specify #:skipped-tests instead.

Change-Id: Icb90decad077e6e2b9f68b618a983b8251954791
2026-04-16 14:18:21 +02:00
Ricardo Wurmus eb8e45a644 gnu: r-rcas: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-rcas)[arguments]: Remove phase
'skip-bad-tests; specify #:skipped-tests instead.

Change-Id: Ib4497fa70e0b61267b61d4fdf70e3e5abd0c1af9
2026-04-16 14:18:21 +02:00
Ricardo Wurmus c81b2b1e2f gnu: r-karyoploter: Enable all tests.
* gnu/packages/bioconductor.scm (r-karyoploter)[arguments]: Remove phase
'disable-bad-tests.

Change-Id: I3d5727327d1da4ba30bd8cd8d9251100329e4cac
2026-04-16 14:18:21 +02:00
Ricardo Wurmus 67c8823b19 gnu: r-sanssouci: Update to 0.16.2-1.fcd60da.
* gnu/packages/bioconductor.scm (r-sanssouci): Update to 0.16.2-1.fcd60da.
[arguments]: Remove phase 'delete-bad-tests.
[propagated-inputs]: Remove r-rcpp and r-rcpparmadillo; add r-matrixtests and
r-rlang.
[native-inputs]: Remove r-ggplot2; add r-knitr.

Change-Id: I30fa708d0a1873d78fa2350e5933e807ccaae821
2026-04-16 14:18:21 +02:00
Ricardo Wurmus 004fe76b40 gnu: r-cicero-monocle3: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-cicero-monocle3)[arguments]: Remove phase
'skip-bad-tests; specify #:skipped-tests instead.

Change-Id: I3ab92000982c97e95e4b157dcf3cfe1d49f056f3
2026-04-16 14:18:21 +02:00
Ricardo Wurmus c36844c511 gnu: r-mutationalpatterns: Enable all tests.
* gnu/packages/bioconductor.scm (r-mutationalpatterns)[arguments]: Remove
phase 'skip-bad-tests.

Change-Id: I51ee4d02fd12e34100a6823a8ba71e117bc618a1
2026-04-16 14:18:21 +02:00
Ricardo Wurmus 3fef246625 gnu: r-bamsignals: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-bamsignals)[arguments]: Remove phase
'disable-bad-tests; specify #:skipped-tests instead.

Change-Id: Ifbb26ef31debc2ad43eb1265c7916b24bfa140ae
2026-04-16 14:18:21 +02:00
Ricardo Wurmus 014493dac3 gnu: r-biomart: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-biomart)[arguments]: Remove phase
'delete-bad-tests; specify #:skipped-tests instead.

Change-Id: I98c167685c07453fd8fa8b8c7700c21591d043af
2026-04-16 14:18:21 +02:00
Ricardo Wurmus 9afe3041c7 gnu: r-biocset: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-biocset)[arguments]: Remove phase
'delete-bad-tests; specify #:skipped-tests instead.

Change-Id: Ibcdfdca6e35869e260a8f02deddacaa59002c7f1
2026-04-16 14:18:20 +02:00
Ricardo Wurmus e74e74a2c5 gnu: r-zellkonverter: Enable tests by bypassing Conda.
* gnu/packages/bioconductor.scm (r-zellkonverter)[arguments]: Enable all tests
but one; add phase 'basilisk-configuration.
[inputs]: Add python-anndata, python-h5py, python-natsort, python-numpy,
python-pandas, python-scipy, and python-wrapper.

Change-Id: I4eb5e34ab540bdeea64f6b8629bb8f17d24c3663
2026-04-16 14:18:20 +02:00
Ricardo Wurmus fa64b9d32f gnu: r-hdf5array: Update comment.
* gnu/packages/bioconductor.scm (r-hdf5array)[arguments]: Update comment on
why we delete a test.

Change-Id: Ibefbe960a12969337a63329d511d6c0891895c94
2026-04-16 14:18:20 +02:00
Ricardo Wurmus dfcf958b81 gnu: r-basilisk: Patch to bypass Conda.
* gnu/packages/bioconductor.scm (r-basilisk)[arguments]: Add phase
'patch-for-guix.

Change-Id: I8bcfd78da0818235a3ab1c00aae8dafdc8aa57aa
2026-04-16 14:18:20 +02:00
Ricardo Wurmus a6451cbd8b gnu: r-decoupler: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-decoupler)[arguments]: Remove phase
'disable-bad-tests; specify #:skipped-tests instead.

Change-Id: I40e3ba1539ee4dc5d471c547a5208317f2a7600e
2026-04-16 14:18:20 +02:00
Ricardo Wurmus 38967414c8 gnu: r-cner: Remove custom phases, enable all tests.
* gnu/packages/bioconductor.scm (r-cner)[arguments]: Remove phases
'disable-bad-tests and 'fix-gcc-14-strictness.

Change-Id: I116538acce4dacad5550727dba14bb72bb8905f4
2026-04-16 14:18:20 +02:00
Ricardo Wurmus c37180cda7 gnu: r-chromvar: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-chromvar)[arguments]: Remove phase
'disable-bad-tests; specify #:skipped-tests instead.

Change-Id: Ia5419e9be986c9600372de103c0ee5353a194346
2026-04-16 14:18:20 +02:00
Ricardo Wurmus 64713e8899 gnu: r-mscoreutils: Enable all tests.
* gnu/packages/bioconductor.scm (r-mscoreutils)[arguments]: Remove phase
'disable-bad-tests.

Change-Id: I6fa331a8110d3923f7f1394023cfa81aa2a1b837
2026-04-16 14:18:20 +02:00
Ricardo Wurmus e115142ef4 gnu: r-abn: Enable all tests.
* gnu/packages/bioconductor.scm (r-abn)[arguments]: Remove phase
'delete-bad-tests.

Change-Id: I78978dfc6e606c90d24c6ef6b4cf0ed5f1af3492
2026-04-16 14:18:20 +02:00
Ricardo Wurmus 870a1e0f53 gnu: r-posterior: Update to 1.7.0.
* gnu/packages/cran.scm (r-posterior): Update to 1.7.0.

Change-Id: I7053e29e54d42cbb82a45d19831accc849df796a
2026-04-16 14:18:19 +02:00
Ricardo Wurmus 22cc7ac54a gnu: r-processx: Update to 3.8.7.
* gnu/packages/cran.scm (r-processx): Update to 3.8.7.

Change-Id: I69d8e6a7d8627f851b066b00e4e74340767facfb
2026-04-16 14:18:19 +02:00
Ricardo Wurmus b50b65cf1b gnu: r-pkgload: Update to 1.5.1.
* gnu/packages/cran.scm (r-pkgload): Update to 1.5.1.

Change-Id: Ib774f4e6a77be5d7358673485337248e47388700
2026-04-16 14:18:19 +02:00
Ricardo Wurmus 99bd3c90c5 gnu: r-ps: Update to 1.9.2.
* gnu/packages/cran.scm (r-ps): Update to 1.9.2.

Change-Id: I44542f83ac5880a79f940ab6702805812d3414e1
2026-04-16 14:18:19 +02:00
Ricardo Wurmus b7383c7929 gnu: r-conos: Update to 1.5.3.
* gnu/packages/bioconductor.scm (r-conos): Update to 1.5.3.

Change-Id: I1f2b0773ab03051dd4c82f991196c0c7ac77063f
2026-04-16 14:18:19 +02:00
Ricardo Wurmus f185250466 gnu: r-barcodetrackr: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-barcodetrackr)[arguments]: Remove phase
'disable-bad-tests; specify #:skipped-tests instead.

Change-Id: Ibe719fb6a2395c31c67788255d7df95988962b4c
2026-04-16 14:18:19 +02:00
Ricardo Wurmus f81dbc1d9d gnu: r-basics: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-basics)[arguments]: Remove phase
'disable-bad-tests; specify #:skipped-tests instead.

Change-Id: I2948991cebaab753c496ec272a9f82c5f359ca2d
2026-04-16 14:18:16 +02:00
Peter Polidoro 0cd40ba2ab gnu: freecad: Update to 1.1.1.
* gnu/packages/engineering.scm (freecad): Update to 1.1.1.

Change-Id: I0b6d872a907f46979a5d102c244835d7af7f11ec
Signed-off-by: Andreas Enge <andreas@enge.fr>
2026-04-16 12:43:38 +02:00
Andreas Enge 857540e6cb gnu: python-geventhttpclient: Update to 2.3.9.
* gnu/packages/python-web.scm (python-geventhttpclient): Update to 2.3.9.

Change-Id: I83ff865b8ae052d24f9920b3d5c029e7c91373cc
2026-04-16 12:43:38 +02:00
Hilton Chain 0d16098802 gnu: fcitx5: Add GUIX_GTK2_IM_MODULE_FILE search path.
* gnu/packages/fcitx5.scm (fcitx5) [native-search-paths]: Add
GUIX_GTK2_IM_MODULE_FILE.

Merges guix/guix!7826
Change-Id: I1ab296cfa7b424196bd7383fd86e69c8fed0355f
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2026-04-16 18:37:11 +08:00
Sharlatan Hellseher eb2482a352 gnu: libftdi: Fix build on python-3.12.
* gnu/packages/libftdi.scm (libftdi)[native-inputs]: Remove swig-4.0;
add python-setuptools and swig.

Change-Id: Idd7c1c616191778c7176ef50007404d1628c914e
2026-04-16 10:35:42 +01:00
Sharlatan Hellseher 3ffa9e2742 gnu: fdroidserver: Update to 2.4.3.
* gnu/packages/android.scm (fdroidserver): Update to 2.4.3.
[source]: Switch to git-fetch.
[propagated-inputs]: Remove python-argcomplete, python-docker,
python-mwclient, python-pyasn1, and python-pyasn1-modules.

Change-Id: I5f184eb4df48ee160091ffa55bb1e9a0ca8c0c40
2026-04-16 10:35:10 +01:00
Sharlatan Hellseher 7a4e3229f7 gnu: sdkmanager: Adjust inputs and test backend.
* gnu/packages/android.scm (sdkmanager):
[arguments] <test-backend>: Use unittest.
[phases]{check}: Use default phase.
[inputs]:  Move from here ...
[propagated-inputs]: ... to here.

Change-Id: I6d976dbf7cee39beda89ea9719dcc1e340da66d9
2026-04-16 10:35:10 +01:00
Sharlatan Hellseher a8103c1b7c gnu: python-asyncinject: Update to 0.6.1.
* gnu/packages/python-xyz.scm (python-asyncinject): Update to 0.6.1.
[source]: Switch to git-fetch.
[native-inputs]: Remove python-wheel.

Change-Id: I097308d486aa6dc0a60f696389413dba2fd79b09
2026-04-16 10:34:50 +01:00
John Kehayias f77bbf8016 gnu: steam-devices-udev-rules: Update to 1.0.0.61-2.7dde9ec.
* gnu/packages/games.scm (steam-devices-udev-rules): Update to 1.0.0.61-2.7dde9ec.

Change-Id: If5931e836978b27d09e128cb5b581292eebcde96
2026-04-15 23:47:42 -04:00
Ian Eure c26c3d0f53 gnu: autofs-service: Fix computing Shepherd requirements.
Handling of non-NFS/SMB mounts was buggy and did not work at all.

* gnu/services/nfs.scm (autofs-configuration->requirements): Add an `else' to
prevent losing the accumulator in the fold.
(autofs-configuration->requirements): Call `delete-duplicates' on the input,
not the output.

Fixes #7927.

Change-Id: I0cccde431d0bd19dc63be8754fb6dfa35a6f8a49
2026-04-15 15:06:05 -07:00
jgart 0d11c221b8 guix: scripts: gc: Give better error reporting when attempting to vacuum.
* guix/scripts/gc.scm (%options): Error out when a non-root user tries
to vacuum the database.

Change-Id: Iee7d626c43980640aa91a3ceeb95675016932c55
Signed-off-by: jgart <jgart@dismail.de>
2026-04-15 17:56:23 -04:00
bdunahu 6abb7bc422 gnu: emacs-xelb: Patch call to xauth with store path.
This ensures login cookies used to authenticate with the X server can be found
at runtime without requiring xauth be in the user's profile.

* gnu/packages/emacs-xyz.scm (emacs-xelb)[#:phases]: Add ‘patch-xauth-path’.
[inputs]: Add xauth.

Change-Id: Ic24cb12d6103a3f6dc24c89f2dd43c1e1f7dc95c
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2026-04-15 23:11:05 +02:00
Liliana Marie Prikler 03937c8724 gnu: Add papers.
* gnu/packages/gnome.scm (papers): New variable.
* gnu/packages/rust-crates.scm (rust-ashpd-0.12.1)
(rust-float-next-after-1.0.0, rust-formatx-0.2.4, rust-geo-0.30.0)
(rust-geo-types-0.7.18, rust-geographiclib-rs-0.2.5, rust-i-float-1.7.0)
(rust-i-key-sort-0.2.0, rust-i-overlay-2.0.5, rust-i-shape-1.7.0)
(rust-i-tree-0.8.3, rust-ink-stroke-modeler-rs-0.1.0, rust-oo7-0.5.0)
(rust-robust-1.2.0): New variables.
(lookup-cargo-inputs): Add ‘papers’.
2026-04-15 23:10:35 +02:00
Liliana Marie Prikler 7ff2ca1b5c gnu: Add poppler-next.
* gnu/packages/pdf.scm (poppler-next): New variable.
2026-04-15 23:10:25 +02:00
λx.x 380efb7408 gnu: emacs-bqn-mode: Update to 2026-02-08
* gnu/packages/emacs-xyz.scm (emacs-bqn-mode): Update to 2026-02-08.

Change-Id: I6e52ba929ba962832c96422f48e8b1aed447a3cf
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2026-04-15 23:10:25 +02:00
Nguyễn Gia Phong 589f4cc655 gnu: Add libfossil.
* gnu/packages/version-control.scm (libfossil): New variable.
* gnu/packages/patches/libfossil-skip-amalgamation.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.

Change-Id: I6e19c074587e17446ac213386a9143d503ebba57
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2026-04-15 23:10:25 +02:00
Nguyễn Gia Phong 05e669ac50 guix: Implement fossil-download.
* guix/fossil-download.scm: New file.
* guix/build/fossil.scm: New file.
* Makefile.am (MODULES): Add them.
* etc/teams.scm (core)[#:scope]: Add "guix/fossil-download.scm".
(vcs)[#:scope]: Add "guix/build/fossil.scm".
* CODEOWNERS: Regenerate file.
* doc/guix.texi (origin Reference): Document fossil-fetch
and fossil-reference.
* NEWS: Add entry about fossil-fetch.

Change-Id: Ia252bcbbb417159a842d5092a937e2aad55a1656
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2026-04-15 23:10:25 +02:00
coopi 08341ec277 gnu: Add emacs-nerd-icons-mode-line.
* gnu/packages/emacs-xyz.scm (emacs-nerd-icons-mode-line): New variable.

Change-Id: Id3f80fe2c094b1e0e3eead99cb9e3083b062319b
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2026-04-15 23:10:25 +02:00
coopi b725619636 gnu: Add emacs-nerd-icons-corfu.
* gnu/packages/emacs-xyz.scm (emacs-nerd-icons-corfu): New variable.

Change-Id: I487dc25bad6d0536a670c13626c1e18f4364c147
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2026-04-15 23:10:24 +02:00
coopi a3f6d396cd gnu: Add emacs-nerd-icons-completion.
* gnu/packages/emacs-xyz.scm (emacs-nerd-icons-completion): New variable.

Change-Id: Ib5b07704689f8a1af6e0dec7e0370d3afde4f7d6
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2026-04-15 23:10:24 +02:00
coopi 7d67cacad1 gnu: Add emacs-nerd-icons-ibuffer.
* gnu/packages/emacs-xyz.scm (emacs-nerd-icons-ibuffer): New variable.

Change-Id: Ia25dd10b7d3950cefec3ad4301cfebacdd4b8c74
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2026-04-15 23:10:24 +02:00
coopi 333d61cf5b gnu: Add emacs-nerd-icons-ivy-rich.
* gnu/packages/emacs-xyz.scm (emacs-nerd-icons-ivy-rich): New variable.

Change-Id: I2266c559c225d1f0bb499734eb6eef4a613436e9
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2026-04-15 23:10:24 +02:00
coopi 21a4d649b2 gnu: Add emacs-nerd-icons-dired.
* gnu/packages/emacs-xyz.scm (emacs-nerd-icons-dired): New variable.

Change-Id: Ib8b192a07e7acbd52cb1705f237ec5a1976b3060
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2026-04-15 23:10:24 +02:00
coopi 5ff9ca0339 gnu: emacs-nerd-icons: Patch out font installer.
* gnu/packages/emacs-xyz.scm (emacs-nerd-icons)[#:phases]: Add
‘disable-font-installer’.

Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2026-04-15 23:10:24 +02:00
Artyom V. Poptsov c4657c774b gnu: guile-pnm: Update to 0.2.0.
* gnu/packages/guile-xyz.scm (guile-pnm): Update to 0.2.0.

Change-Id: Icc2c71565e0100f82d22f57bfed3bba8d36ba353
2026-04-16 00:00:42 +03:00
Cayetano Santos b559fd6938 gnu: Add fsviewer.
* gnu/packages/gnustep.scm (fsviewer): New variable.

Merges guix/guix!7829

Change-Id: Ie9bc5f3eaed7a507c9aa031ab96e65ddaf69e6ad
2026-04-15 16:17:15 +02:00
Andreas Enge fa38888348 gnu: libnl: Update to 3.12.0.
* gnu/packages/linux.scm (libnl): Update to 3.12.0.

Change-Id: I3bfc0e8b6e63f43addf28966abd49fd42588888c
2026-04-15 13:52:09 +02:00
32 changed files with 2198 additions and 733 deletions
+2
View File
@@ -68,6 +68,7 @@ guix/discovery\.scm @guix/core
guix/docker\.scm @guix/core
guix/download\.scm @guix/core
guix/elf\.scm @guix/core
guix/fossil-download\.scm @guix/core
guix/ftp-client\.scm @guix/core
guix/gexp\.scm @guix/core
guix/git-authenticate\.scm @guix/core
@@ -484,6 +485,7 @@ gnu/services/version-control\.scm @guix/vcs
gnu/tests/version-control\.scm @guix/vcs
guix/build/bzr\.scm @guix/vcs
guix/build/cvs\.scm @guix/vcs
guix/build/fossil\.scm @guix/vcs
guix/build/git\.scm @guix/vcs
guix/build/hg\.scm @guix/vcs
guix/build/svn\.scm @guix/vcs
+2
View File
@@ -104,6 +104,7 @@ MODULES = \
guix/discovery.scm \
guix/android-repo-download.scm \
guix/bzr-download.scm \
guix/fossil-download.scm \
guix/git-download.scm \
guix/hg-download.scm \
guix/hash.scm \
@@ -236,6 +237,7 @@ MODULES = \
guix/build/asdf-build-system.scm \
guix/build/bzr.scm \
guix/build/copy-build-system.scm \
guix/build/fossil.scm \
guix/build/git.scm \
guix/build/hg.scm \
guix/build/glib-or-gtk-build-system.scm \
+3
View File
@@ -20,6 +20,9 @@ Please send Guix bug reports to bug-guix@gnu.org.
*** New service for Fossil SCM
*** TeX Live updated to 2026.1
** Programming interfaces
*** New (guix fossil-download) module, for fetching Fossil repositories
* Changes in 1.5.0 (since 1.4.0)
** Package management
*** New rpm format for the guix pack command
+46
View File
@@ -8737,6 +8737,52 @@ The example below denotes a version of gnu-standards to fetch:
@end deftp
For Fossil repositories, the module @code{(guix fossil-download)} defines
the @code{fossil-fetch} origin method and @code{fossil-reference} data type
for support of the Fossil @abbr{SCM, software configuration management} system.
@deffn {Procedure} fossil-fetch ref hash-algo hash [name]
Return a fixed-output derivation that fetches @var{ref}, a
@code{<fossil-reference>} object. The output is expected to have recursive
hash @var{hash} of type @var{hash-algo} (a symbol). Use @var{name} as
the file name, or a generic name if @code{#f}.
@end deffn
@deftp {Data Type} fossil-reference
This data type represents a Fossil reference
for @code{fossil-fetch} to retrieve.
@table @asis
@item @code{uri} (type: string)
The URI of a Fossil repository to clone, in one of the following forms,
in which @code{[...]} denotes optional elements:
@table @code
@item http[s]://[userid[:password]@@]host[:port][/path]
A HTTP/HTTPS URL.
@item [file://]path/to/repo.fossil
A file URI, where the path must have an extra leading @code{/}
to use an absolute path (without the URI scheme, the repository
is opened directly without cloning).
@end table
@item @code{check-in} (type: string)
A @url{https://fossil-scm.org/home/doc/trunk/www/checkin_names.wiki,
name of the check-in} to fetch, e.g.@: its canonical hexadecimal identifier,
associated tag and/or timestamp.
@end table
The example below denotes the @code{version-3.51.1} tag
of the SQLite repository:
@lisp
(fossil-reference
(uri "https://sqlite.org/src")
(check-in "version-3.51.1"))
@end lisp
@end deftp
@node Defining Package Variants
@section Defining Package Variants
+2
View File
@@ -565,6 +565,7 @@ challenges"))
"guix/docker.scm"
"guix/download.scm"
"guix/elf.scm"
"guix/fossil-download.scm"
"guix/ftp-client.scm"
"guix/gexp.scm"
"guix/git-authenticate.scm"
@@ -1214,6 +1215,7 @@ the \"texlive\" importer."
"gnu/tests/version-control.scm"
"guix/build/bzr.scm"
"guix/build/cvs.scm"
"guix/build/fossil.scm"
"guix/build/git.scm"
"guix/build/hg.scm"
"guix/build/svn.scm")))
+1
View File
@@ -1698,6 +1698,7 @@ dist_patch_DATA = \
%D%/packages/patches/libcss-check-format.patch \
%D%/packages/patches/libeb-gcc-14.patch \
%D%/packages/patches/libextractor-tidy-support.patch \
%D%/packages/patches/libfossil-skip-amalgamation.patch \
%D%/packages/patches/libftdi-fix-paths-when-FTDIPP-set.patch \
%D%/packages/patches/libgeotiff-fix-tests-with-proj-9.1.1.patch \
%D%/packages/patches/libgeotiff-fix-tests-with-proj-9.3.0.patch \
+12 -20
View File
@@ -765,7 +765,7 @@ file system.")
(sha256
(base32 "0r3xwk8xsfxvmxyw3d57sy2i9by24g0l1jl40735jiac9mypcg7n"))))
(build-system pyproject-build-system)
(inputs (list python-requests python-argcomplete python-urllib3
(propagated-inputs (list python-requests python-argcomplete python-urllib3
python-looseversion gnupg))
(native-inputs (list python-setuptools python-wheel python-requests-cache
python-defusedxml))
@@ -773,8 +773,7 @@ file system.")
(list $SSL_CERT_FILE))
(arguments
(list
#:test-flags
#~(list "-k" "test_*")
#:test-backend #~'unittest
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'patch-tests
@@ -793,11 +792,7 @@ file system.")
(lambda _
(substitute* "sdkmanager.py"
(("gpgv")
(string-append #$(this-package-input "gnupg") "/bin/gpgv")))))
(replace 'check
(lambda* (#:key tests? test-flags #:allow-other-keys)
(when tests?
(apply invoke "python" "-m" "unittest" test-flags)))))))
(string-append #$(this-package-input "gnupg") "/bin/gpgv"))))))))
(home-page "https://gitlab.com/fdroid/sdkmanager")
(synopsis "Replacement for Android sdkmanager written in Python")
(description
@@ -1182,14 +1177,16 @@ for communicating with Xiaomi smart appliances over miIO and MIoT protocols.")
(define-public fdroidserver
(package
(name "fdroidserver")
(version "2.4.2")
(version "2.4.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "fdroidserver" version))
(method git-fetch)
(uri (git-reference
(url "https://gitlab.com/fdroid/fdroidserver")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32
"06xybginrwi5c7bw000wz5s5hzi0aqrxskzwh8qc6wv463w2djax"))))
(base32 "1745fqxr2qfrls4wr6x9w1262b9pxmw9yvzd9b71ya2qmj74q17n"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -1200,22 +1197,17 @@ for communicating with Xiaomi smart appliances over miIO and MIoT protocols.")
(lambda _
(setenv "HOME" "/tmp"))))))
(propagated-inputs
(list python-androguard
(list python-platformdirs
python-androguard
python-apache-libcloud
python-argcomplete
python-asn1crypto
python-clint
python-defusedxml
python-docker
python-gitpython
python-mwclient
python-oscrypto
python-paramiko
python-pillow
python-platformdirs
python-puremagic
python-pyasn1
python-pyasn1-modules
python-pyyaml
python-qrcode
python-requests
File diff suppressed because it is too large Load Diff
+10 -8
View File
@@ -913,7 +913,7 @@ suite native in R.")
(define-public r-bpcells
(package
(name "r-bpcells")
(version "0.3.0")
(version "0.3.1")
(source
(origin
(method git-fetch)
@@ -922,7 +922,7 @@ suite native in R.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "12h1di45fg06nhsliii7v0h1z567pkpis1xm4ar1qr8ns1n8iljw"))
(base32 "0yqgcajq83g25mznwcngaw7pi6vcqxqdnynpgb95yci57k3wrp6j"))
(modules '((guix build utils)))
(snippet
'(delete-file-recursively "r/src/vendor/highway"))))
@@ -931,13 +931,15 @@ suite native in R.")
(arguments
(list
#:phases
'(modify-phases %standard-phases
`(modify-phases %standard-phases
(add-after 'unpack 'chdir
(lambda _
(substitute* "r/configure"
(("tools/hwy-test.cpp" m)
(string-append m " $HWY_LIBS $HWY_CFLAGS")))
(chdir "r"))))))
(lambda _ (chdir "r")))
,@(if (target-x86-32?)
'((add-after 'chdir 'require-sse2
;; This avoids falling back to the scalar backend in
;; highway, which fails to build.
(lambda _ (setenv "CFLAGS" "-msse2"))))
'()))))
(propagated-inputs
(list r-dplyr
r-ggplot2
+625 -101
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File diff suppressed because it is too large Load Diff
+198 -3
View File
@@ -784,7 +784,7 @@ reading the extensive documentation about BookmarkPlus on the Emacs Wiki.")
(package
(name "emacs-bqn-mode")
;; Upstream releases are tagged by date.
(version "2025-07-06")
(version "2026-02-08")
(source
(origin
(method git-fetch)
@@ -793,7 +793,7 @@ reading the extensive documentation about BookmarkPlus on the Emacs Wiki.")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32 "1b25k66nn4qa4ryhm8mzc53qvsvhgjzdngisw28cpdh109627iz3"))))
(base32 "1m9l4if3a9i6r76v370gh6azgj2lwqcnpavfv2bkvm9ad56f3pa8"))))
(build-system emacs-build-system)
(arguments
(list #:tests? #f)) ;No tests found in source.
@@ -24580,6 +24580,13 @@ Meows motions.")
#:tests? #f ; no test suite
#:phases
#~(modify-phases %standard-phases
(add-before 'patch-el-files 'patch-xauth-path
;; Uses xauth directly at runtime to authenticate with the X server.
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "xcb.el"
(("xauth list")
(string-append (search-input-file inputs "/bin/xauth")
" list")))))
(add-after 'expand-load-path 'regenerate-el-files
(lambda* (#:key inputs native-inputs #:allow-other-keys)
(substitute* "xelb-gen"
@@ -24587,6 +24594,7 @@ Meows motions.")
(invoke "make"
(format #f "PROTO_PATH=~a/share/xcb"
#$(this-package-native-input "xcb-proto"))))))))
(inputs (list xauth))
(native-inputs (list xcb-proto))
(propagated-inputs (list emacs-compat))
(home-page "https://github.com/emacs-exwm/xelb")
@@ -35412,12 +35420,199 @@ files are easily readable and they work nicely with version control systems.")
(build-system emacs-build-system)
(arguments
(list #:include #~(cons "^data\\/" %default-include)
#:tests? #f)) ; no tests
#:tests? #f ; no tests
#:phases
#~(modify-phases %standard-phases
;; The nerd-icons-install-fonts function would otherwise
;; download fonts from the network. Replace it with a stub
;; that instructs the user to install the font via Guix.
(add-after 'unpack 'disable-font-installer
(lambda _
(emacs-batch-edit-file "nerd-icons.el"
'(progn
(search-forward "(defun nerd-icons-install-fonts")
(beginning-of-line)
(kill-sexp)
(insert "\
(defun nerd-icons-install-fonts (&optional pfx)
(interactive \"P\")
(message \"To use nerd-icons fonts, install `font-nerd-symbols' using
`guix package -i font-nerd-symbols' or add it to your manifest or home config.
Remember, that you may have to run `fc-cache -rv' to refresh the font cache.\
\"))")
(basic-save-buffer))))))))
(synopsis "Library for easily using nerd font icons inside Emacs")
(description "Nerd-icons an alternative to all-the-icons. It works on both
GUI and terminal, and requires a nerd font installed on your system.")
(license license:gpl3+))))
(define-public emacs-nerd-icons-dired
;; No tags provided upstream
(let ((commit "adf9a2bb5f3f13be7a676923639337f3fcc5d8c3")
(revision "0"))
(package
(name "emacs-nerd-icons-dired")
(version (git-version "0.0.1" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/rainstormstudio/nerd-icons-dired")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "0x1xmwlfjgbk5kk4bxvgz4ykwwgiwmdbzhgsw49kpzz678a3qzrp"))))
(build-system emacs-build-system)
(arguments
(list
#:tests? #f)) ;no tests
(propagated-inputs (list emacs-nerd-icons))
(home-page "https://github.com/rainstormstudio/nerd-icons-dired")
(synopsis "Icons for Dired via Nerd Icons")
(description
"This package adds icons to Dired, using the @code{nerd-icons} package.")
(license license:gpl3+))))
(define-public emacs-nerd-icons-ivy-rich
;; Tagged release is not up-to-date, according to the "Version:" keyword in
;; main file.
(let ((commit "5006f91b49e86e232cdc1a628501b76124c41dac")
(revision "0"))
(package
(name "emacs-nerd-icons-ivy-rich")
(version (git-version "1.0.1" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/seagle0128/nerd-icons-ivy-rich")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "0m62l4cl9j3ssd25rz40vgrv99bmwn6l4ig2sf8zzi0fpzm8axgh"))))
(build-system emacs-build-system)
(arguments
(list
#:tests? #f)) ;tests require Cask
(propagated-inputs
(list emacs-ivy-rich
emacs-nerd-icons))
(home-page "https://github.com/seagle0128/nerd-icons-ivy-rich")
(synopsis "Icons for Ivy via Nerd Icons")
(description
"This package adds icons to Ivy, using the @code{ivy-rich} and
@code{nerd-icons} packages.")
(license license:gpl3+))))
(define-public emacs-nerd-icons-ibuffer
(package
(name "emacs-nerd-icons-ibuffer")
(version "1.0.0")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/seagle0128/nerd-icons-ibuffer")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "1wj6kcgvh700maj9i5pmgzc48lbj0dbxx849a8w519m4anr7b23s"))))
(build-system emacs-build-system)
(arguments
(list
#:tests? #f)) ;tests require Cask
(propagated-inputs
(list emacs-nerd-icons))
(home-page "https://github.com/seagle0128/nerd-icons-ibuffer")
(synopsis "Icons for Ibuffer via Nerd Icons")
(description
"This package adds icons to ibuffer in Emacs, using the @code{nerd-icons}
package.")
(license license:gpl3+)))
(define-public emacs-nerd-icons-completion
;; No tags provided upstream
(let ((commit "63a6b3f1eb98bb381c86a1658ac401c8967079b8")
(revision "0"))
(package
(name "emacs-nerd-icons-completion")
(version (git-version "0.0.1" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/rainstormstudio/nerd-icons-completion")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "08p361rh5mv3ng10av1381kzl9s4msdjyca96hsgsh05qwq5pdrf"))))
(build-system emacs-build-system)
(arguments
(list
#:tests? #f)) ;no tests
(propagated-inputs (list emacs-nerd-icons))
(home-page "https://github.com/rainstormstudio/nerd-icons-completion")
(synopsis "Icons for Emacs minibuffer completion via Nerd Icons")
(description
"This package adds icons to minibuffer completion in Emacs, using the
@code{nerd-icons} package. It supports @code{vertico} and @code{marginalia}.")
(license license:gpl3+))))
(define-public emacs-nerd-icons-corfu
(package
(name "emacs-nerd-icons-corfu")
(version "1.0.0")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/LuigiPiucco/nerd-icons-corfu")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "036p45wqwrqhn5xv5sn3gsm2mb79gj6fk24zpkfa7wrv45qqgb21"))))
(build-system emacs-build-system)
(arguments
(list
#:tests? #f)) ;no tests
(propagated-inputs
(list emacs-corfu
emacs-nerd-icons))
(home-page "https://github.com/LuigiPiucco/nerd-icons-corfu")
(synopsis "Icons for Corfu via Nerd Icons")
(description
"This package adds icons to @code{corfu}, using the @code{nerd-icons}
package.")
(license license:gpl3+)))
(define-public emacs-nerd-icons-mode-line
;; No tags provided upstream
(let ((commit "23eca8e16799524889d661f4140355e81b8f929c")
(revision "0"))
(package
(name "emacs-nerd-icons-mode-line")
(version (git-version "0.0.1" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/grolongo/nerd-icons-mode-line")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "0l2bg22cllab9wz5wxd6zhrywavqrlvv1a6y49ij63qhlsfncy6s"))))
(build-system emacs-build-system)
(arguments
(list
#:tests? #f)) ;no tests
(propagated-inputs (list emacs-nerd-icons))
(home-page "https://github.com/grolongo/nerd-icons-mode-line")
(synopsis "Icons for the Emacs modeline via Nerd Icons")
(description
"This package adds icons to the modeline in Emacs, using the
@code{nerd-icons} package.")
(license license:gpl3+))))
(define-public emacs-all-the-icons
;; The latest release was on 3 June 2021.
(let ((commit "4778632b29c8c8d2b7cd9ce69535d0be01d846f9")
+2 -2
View File
@@ -2730,7 +2730,7 @@ dynamics is used by FreeCAD 1.0.0 for its new Assembly workbench.")
(define-public freecad
(package
(name "freecad")
(version "1.1.0")
(version "1.1.1")
(source
(origin
(method git-fetch)
@@ -2740,7 +2740,7 @@ dynamics is used by FreeCAD 1.0.0 for its new Assembly workbench.")
(recursive? #t))) ;needed for the AddonManager
(file-name (git-file-name name version))
(sha256
(base32 "029ndw1dypx0xhs4fyiinf7gpk8am0vm9b24idvdsx9x7ghrqz4j"))
(base32 "05dx7ifx33705mxb0vc82j0mzzkazakgadfgq5bws30qrxp49xgg"))
(snippet
#~(begin
(use-modules (guix build utils))
+5
View File
@@ -148,6 +148,11 @@ client.")
(list (search-path-specification
(variable "FCITX_ADDON_DIRS")
(files '("lib/fcitx5")))
(search-path-specification
(variable "GUIX_GTK2_IM_MODULE_FILE")
(file-type 'regular)
(separator #f)
(files '("lib/gtk-2.0/2.10.0/immodules-gtk2.cache")))
(search-path-specification
(variable "GUIX_GTK3_IM_MODULE_FILE")
(file-type 'regular)
+3 -3
View File
@@ -13508,8 +13508,8 @@ rules to solve permissions issues.")
(define-public steam-devices-udev-rules
;; Last release from 2019-04-10
(let ((commit "13443480a64fe8f10676606bd57da6de89f8ccb1")
(revision "1"))
(let ((commit "7dde9ecb3c386363ecd9bd0a3b77e4756d200704")
(revision "2"))
(package
(name "steam-devices-udev-rules")
(version (git-version "1.0.0.61" revision commit))
@@ -13521,7 +13521,7 @@ rules to solve permissions issues.")
(file-name (git-file-name name version))
(sha256
(base32
"0i086gmnk93q76sw1laa9br6b7zj2r6nrrw7d64y4q9wcrlxw2bi"))))
"0w0xkgi9fpvdbpl57f8fy2nwy2icm6iag39b8ifpkijlxgclx1p3"))))
(build-system copy-build-system)
(arguments
'(#:install-plan '(("./" "lib/udev/rules.d"
+74 -9
View File
@@ -425,14 +425,29 @@ hierarchical hexagonal geospatial indexing system")
(base32
"00qdk9a4048pzfj2rhzkfw3lvm642znf6kr4x29i3d94494pxsnn"))))
(build-system cmake-build-system)
(arguments `(#:phases
(modify-phases %standard-phases
(add-after
'unpack 'patch-test-shebangs
(lambda _
(substitute* '("tests/xmltester/testrunner.sh"
"tests/xmltester/safe_to_xml.sh")
(("/bin/sh") (which "sh"))))))))
(arguments
`(#:phases
(modify-phases %standard-phases
,@(if (or (target-x86-32?) (target-arm32?))
'((add-after 'unpack 'disable-broken-tests
(lambda _
;; This test fails due to limited accuracy.
(delete-file "tests/xmltester/tests/general/TestCentroid.xml")
(with-directory-excursion "tests/unit"
;; These also fail due to limited accuracy.
(delete-file "algorithm/MinimumAreaRectangleTest.cpp")
(delete-file "capi/GEOSMinimumRotatedRectangleTest.cpp")
;; It is unclear why these fail, but I'm guessing:
;; limited accuracy.
(delete-file "linearref/LengthIndexedLineTest.cpp")
(delete-file "math/DDTest.cpp")))))
'())
(add-after
'unpack 'patch-test-shebangs
(lambda _
(substitute* '("tests/xmltester/testrunner.sh"
"tests/xmltester/safe_to_xml.sh")
(("/bin/sh") (which "sh"))))))))
(inputs
(list glib))
(home-page "https://libgeos.org/")
@@ -955,6 +970,29 @@ hydrology and waste deposition.")
(base32
"03r6mspfv22fs4x4jcgv25v9gsj5k6zy8incvyf94qf50g47s2bc"))))
(build-system cmake-build-system)
(arguments
(if (target-32bit?)
(list
#:phases
'(modify-phases %standard-phases
(add-after 'unpack 'patch-tests
(lambda _
;; These regression tests fail due to accuracy problems.
(substitute* "test/unit/test_factory.cpp"
(("^TEST\\(factory, AuthorityFactory_createUnitOfMeasure_linear_us_survey_foot\\) \\{" m)
(string-append m "\nGTEST_SKIP();\n")))
(substitute* "test/unit/test_grids.cpp"
(("^TEST_F\\(GridTest, VerticalShiftGridSet_gtx\\) \\{" m)
(string-append m "\nGTEST_SKIP();\n")))
(substitute* "test/unit/test_defmodel.cpp"
(("^TEST\\(defmodel, evaluator_horizontal_unit_metre\\) \\{" m)
(string-append m "\nGTEST_SKIP();\n")))
;; These regression tests fail due to accuracy problems.
(substitute* "test/CMakeLists.txt"
(("proj_add_gie_test\\(\"4D-API-cs2cs-style\".+") "")
(("proj_add_gie_test\\(\"Builtins\".+") "")
(("proj_add_gie_test\\(\"peirce_q\".+") ""))))))
'()))
(native-inputs (list googletest pkg-config))
(propagated-inputs (list curl libtiff sqlite)) ;required by proj.pc
(home-page "https://proj.org/")
@@ -984,7 +1022,34 @@ lets developers use the functionality of Proj in their own software.")
version ".tar.gz"))
(sha256
(base32
"1g0hkpiablvhsmw0kn5frwgdir3q7avc45p6lc1zhhhzkv5ikydh"))))))
"1g0hkpiablvhsmw0kn5frwgdir3q7avc45p6lc1zhhhzkv5ikydh"))))
(arguments
(if (target-32bit?)
(list
#:phases
'(modify-phases %standard-phases
(add-after 'unpack 'patch-tests
(lambda _
;; These regression tests fail due to accuracy problems.
(substitute* "test/unit/test_factory.cpp"
(("^TEST\\(factory, AuthorityFactory_createUnitOfMeasure_linear_us_survey_foot\\) \\{" m)
(string-append m "\nGTEST_SKIP();\n")))
(substitute* "test/unit/test_grids.cpp"
(("^TEST_F\\(GridTest, VerticalShiftGridSet_gtx\\) \\{" m)
(string-append m "\nGTEST_SKIP();\n")))
(substitute* "test/unit/test_defmodel.cpp"
(("^TEST\\(defmodel, evaluator_horizontal_unit_metre\\) \\{" m)
(string-append m "\nGTEST_SKIP();\n")))
;; These regression tests fail due to accuracy problems.
(substitute* "test/CMakeLists.txt"
(("proj_add_gie_test\\(\"4D-API-cs2cs-style\".+") "")
(("proj_add_gie_test\\(\"Builtins\".+") "")
(("proj_add_gie_test\\(\"peirce_q\".+") "")
(("proj_add_gie_test\\(\"adams_ws2\".+") ""))
(substitute* "test/cli/CMakeLists.txt"
(("proj_add_test_script_sh\\(\"testvarious\" CS2CS_BIN\\)") ""))))))
'()))))
(define-public python-obspy
(package
+86
View File
@@ -2598,6 +2598,92 @@ of Evince is to replace the multiple document viewers that exist
on the GNOME Desktop with a single simple application.")
(license license:gpl2+)))
(define-public papers
(package
(name "papers")
(version "50.0")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/papers/"
(version-major version) "/"
"papers-" version ".tar.xz"))
(sha256
(base32 "01dws72fb19i9jwp3r0khr7ym2ns51fifdzafb5dcr5w8vmj06rh"))))
(build-system meson-build-system)
(arguments
(list
#:glib-or-gtk? #t
#:configure-flags
#~(list (string-append "-Dc_link_args=-Wl,-rpath=" #$output "/lib"))
#:imported-modules `(,@%meson-build-system-modules
,@%cargo-build-system-modules)
#:modules `(((guix build cargo-build-system) #:prefix cargo:)
(guix build meson-build-system)
(guix build utils))
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'prepare-for-build
(lambda _
(substitute* "meson.build"
(("gtk_update_icon_cache: true")
"gtk_update_icon_cache: false")
(("update_desktop_database: true")
"update_desktop_database: false"))
(substitute* "meson.build"
(("'Cargo.lock',")
""))
(delete-file "Cargo.lock")))
(add-after 'configure 'prepare-cargo-build-system
(lambda args
(for-each
(lambda (phase)
(format #t "Running cargo phase: ~a~%" phase)
(apply (assoc-ref cargo:%standard-phases phase)
#:vendor-dir "vendor"
#:cargo-target #$(cargo-triplet)
args))
'(unpack-rust-crates
configure
check-for-pregenerated-files
patch-cargo-checksums))
(setenv "RUSTFLAGS"
(string-append (or (getenv "RUSTFLAGS") "")
" -C link-arg=-Wl,-rpath,"
#$output "/lib")))))))
(native-inputs
(cons* blueprint-compiler
gettext-minimal
`(,glib "bin")
gobject-introspection
gi-docgen
itstool
pkg-config
rust
`(,rust "cargo")
(or (and=> (%current-target-system)
(compose list make-rust-sysroot))
'())))
(inputs
(cons* appstream
djvulibre
exempi
gtk
libadwaita
libarchive
libspelling
libtiff
nautilus ; for nautilus extension
poppler-next
zlib
(cargo-inputs 'papers)))
(home-page "https://apps.gnome.org/Papers")
;; TODO: drop “new” when updating to GNOME 49 or newer.
(synopsis "GNOME's new document viewer")
(description "Papers is a document viewer capable of displaying multiple
and single page document formats like PDF and DejaVu.")
(license license:gpl2+)))
(define-public gsettings-desktop-schemas
(package
(name "gsettings-desktop-schemas")
+28
View File
@@ -48,6 +48,34 @@
#:use-module (gnu packages xml)
#:use-module (ice-9 match))
(define-public fsviewer
(package
(name "fsviewer")
(version "0.2.7")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/roblillack/fsviewer")
(commit (string-append "v" version))))
(sha256
(base32
"067fvbq7b4lbnn1flmwf8lm0vq4n6qz5yz6hhab30l4gksfk51cg"))
(file-name (git-file-name name version))))
(build-system cmake-build-system)
(arguments (list #:tests? #f)) ;no tests
(inputs
(list windowmaker libxmu libxpm))
(native-inputs
(list pkg-config))
(home-page "https://github.com/roblillack/fsviewer")
(synopsis "File viewer for Window Maker")
(description "FSViewer is a NeXT FileViewer lookalike for Window
Maker supporting browser mode and list mode. This version is a fork of
FSViewer.app originally written by George Clernon (1998-99) and later
maintained by Guido Scholz (2002-07).")
(license license:gpl2)))
(define-public gnustep-make
(package
(name "gnustep-make")
+2 -2
View File
@@ -5790,7 +5790,7 @@ processing filters.")
(define-public guile-pnm
(package
(name "guile-pnm")
(version "0.1.0")
(version "0.2.0")
(source
(origin
(method git-fetch)
@@ -5799,7 +5799,7 @@ processing filters.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "1yvsni4hll20g99zq4wl734f9i8gpjr1sqsnk3a93k2dd7b6ymac"))))
(base32 "06kgp1gh8hdj1j6w7i981prx93wfjpayrnjlydlzs7l5j04l4m3a"))))
(build-system gnu-build-system)
(arguments
(list
+13 -1
View File
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019, 2021 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2014-2019, 2021, 2026 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2021, 2026 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2017 Leo Famulari <leo@famulari.name>
;;; Copyright © 2017, 2022 Marius Bakke <marius@gnu.org>
@@ -226,6 +226,18 @@ JNI.")
(setenv "JAVACMD" (search-input-file inputs "/bin/jamvm"))
(setenv "JAVAC" (search-input-file inputs "/bin/jikes"))
(setenv "CLASSPATH" (search-input-file inputs "/lib/rt.jar"))))
,@(if (target-x86-32?)
;; XXX: On i686 isFile() always seems to return true. Patching
;; this here is very ugly, but the effects are limited. None
;; of these changes remain by the time we've built Icedtea and
;; the other JDKs.
'((add-after 'unpack 'disable-isFile-checks
(lambda _
(substitute* "src/main/org/apache/tools/ant/util/ResourceUtils.java"
(("destFile = \\(\\(FileProvider\\).*") ""))
(substitute* "src/main/org/apache/tools/ant/taskdefs/Mkdir.java"
(("dir.isFile\\(\\)") "false")))))
'())
(replace 'build
(lambda* (#:key inputs outputs #:allow-other-keys)
;; Ant complains if this file doesn't exist.
+2 -1
View File
@@ -33,6 +33,7 @@
#:use-module (gnu packages libusb)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
#:use-module (gnu packages python-build)
#:use-module (gnu packages swig)
#:use-module (gnu packages textutils))
@@ -95,7 +96,7 @@
"/html"))))))
#:tests? #f)) ; tests fail without access to USB
(native-inputs
(list doxygen graphviz pkg-config python swig-4.0))
(list doxygen graphviz pkg-config python python-setuptools swig))
(inputs
(list boost libconfuse))
(propagated-inputs
+3 -3
View File
@@ -4914,7 +4914,7 @@ transparently through a bridge.")
(define-public libnl
(package
(name "libnl")
(version "3.7.0")
(version "3.12.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -4923,7 +4923,7 @@ transparently through a bridge.")
"/libnl-" version ".tar.gz"))
(sha256
(base32
"0faryrbvp0x4s2zhg5d78vd5q4w34lrr736gpm9wcwpaxv5krr4z"))))
"066xq01y2mx0xi7bwa5y6ciw1ygla15qdlzzyvyzb8zijrqwllgw"))))
(build-system gnu-build-system)
(native-inputs
`(("bison" ,bison)
@@ -4938,7 +4938,7 @@ transparently through a bridge.")
(string-join (string-split version #\.) "_")
"/libnl-doc-" version ".tar.gz"))
(sha256
(base32 "1ra8xdf06q9hlsrnc1yz67xkp4kd9sd27ff02mlixixnyyjp32sp"))))))
(base32 "18f14pdycghy6fcd27faqgh19zpam6b45s8bgsk85kb9wwzq3yd4"))))))
(outputs `("out" "doc"))
(arguments
`(#:phases
+12 -1
View File
@@ -2475,6 +2475,9 @@ similar to MATLAB, GNU Octave or SciPy.")
;; "--enable-doxygen"
"--enable-dot"
"--enable-netcdf-4"
#$@(if (or (target-x86-32?) (target-arm32?))
'("CFLAGS=-Wno-error=incompatible-pointer-types")
'())
(string-append "--with-plugin-dir=" #$output "/lib/hdf5-plugins"))
#:phases
#~(modify-phases %standard-phases
@@ -2486,7 +2489,15 @@ similar to MATLAB, GNU Octave or SciPy.")
(("testurl.sh") ""))
(substitute* "nczarr_test/Makefile.in"
(("/bin/bash")
(search-input-file inputs "bin/bash")))))
(search-input-file inputs "bin/bash")))
;; This test fails on 32 bit platforms.
#$@(if (or (target-x86-32?) (target-arm32?))
'((substitute* '("ncdump/tst_netcdf4_4.sh"
"ncdump/tst_nccopy4.sh")
(("#!/bin/sh" m) (string-append m "\nexit 0\n")))
(substitute* "ncdump/Makefile.in"
(("tst_netcdf4_4.log") "")))
'())))
(add-before 'configure 'fix-source-date
(lambda _
;; As we ${SOURCE_DATE_EPOCH} evaluates to "1" in the build
@@ -0,0 +1,43 @@
--- a/Makefile.in
+++ b/Makefile.in
@@ -265,15 +265,11 @@
amal.flags = -nc
amal.run = TOPDIR="$(DIR.top)" $(SHELL.bash) $(bin.make-amal) --quiet
libfossil.c: $(amal.deps)
$(amal.run) $(amal.flags)
-libfossil.h: libfossil.c
-all: libfossil.c
@if ENABLE_CXX
-libfossil.hpp: libfossil.c
-libfossil.c++: libfossil.c
amal.flags += -c++
@endif
.PHONY: amal
amal: libfossil.c
@@ -287,19 +283,16 @@
fossil uv sync
@endif
@endif
install: install-headers
-install-headers: libfossil.h $(install-dir.include)
- $(INSTALL.noexec) libfossil.h $(install-dir.include)
+install-headers: include/libfossil.h $(install-dir.include)
+ $(INSTALL.noexec) $< $(install-dir.include)
@if ENABLE_CXX
-libfossil++.hpp: libfossil.h
-libfossil++.cpp: libfossil++.hpp
-all: libfossil++.cpp
install-headers: install-headers++
-install-headers++: libfossil++.hpp $(install-dir.include)
- $(INSTALL.noexec) libfossil++.hpp $(install-dir.include)
+install-headers++: include/libfossil.hpp $(install-dir.include)
+ $(INSTALL.noexec) $< $(install-dir.include)
@endif # ENABLE_CXX
clean: clean-amalgamation
clean-amalgamation:
rm -f libfossil.c libfossil.h libfossil++.cpp libfossil++.hpp
rm -f libfossil-config.h libfossil-amalgamation.zip VERSION.h
+28
View File
@@ -472,6 +472,34 @@ Poppler gives access to the following binary programs:
(license license:gpl2+)
(home-page "https://poppler.freedesktop.org/")))
(define-public poppler-next
(package
(inherit poppler)
(name "poppler-next")
(version "26.04.0")
(source (origin
(method url-fetch)
(uri (string-append "https://poppler.freedesktop.org/poppler-"
version ".tar.xz"))
(sha256
(base32
"14q69q6ipy3m4ywdhlr48qlscwzrv8jcns3g2306pyaa25im35dh"))))
(arguments (substitute-keyword-arguments arguments
((#:configure-flags flags)
#~(cons*
"-DENABLE_GPGME=OFF"
"-DENABLE_QT5=OFF"
"-DENABLE_QT6=OFF"
#$flags))
((#:phases phases)
#~(modify-phases #$phases
(add-after 'install 'sanitize-pkg-config-files
(lambda _
(substitute* (find-files #$output "\\.pc$")
(("^Requires.private:.*" all)
(string-append "# " all)))))))))
(inputs (modify-inputs inputs (prepend curl)))))
(define-public poppler-data
(package
(name "poppler-data")
+2 -2
View File
@@ -7883,7 +7883,7 @@ basic TCP/IP protocols.")
(define-public python-geventhttpclient
(package
(name "python-geventhttpclient")
(version "2.3.3")
(version "2.3.9")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -7893,7 +7893,7 @@ basic TCP/IP protocols.")
(file-name (git-file-name name version))
(sha256
(base32
"1ya0i0fbx054mfx5d1k75fcf64xzp7vva8lkwwzan41xbnc56nyj"))))
"1diq6n9sr92rsqbpxlbhbn1d22hrlzp6swykz9bfzh7sxpywa6j8"))))
(build-system pyproject-build-system)
(arguments
(list
+11 -6
View File
@@ -23055,16 +23055,21 @@ completes.")
(define-public python-asyncinject
(package
(name "python-asyncinject")
(version "0.6")
(version "0.6.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "asyncinject" version))
(method git-fetch)
(uri (git-reference
(url "https://github.com/simonw/asyncinject")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32 "0x57idiy19lzyn32klgm06r223z8gr2aqqk91gysbshq7jg8g3pf"))))
(base32 "127ahb32x2qqjk17a667adrvrl63ima8khifq6dfm0q3vlfslxnn"))))
(build-system pyproject-build-system)
(native-inputs (list python-pytest python-pytest-asyncio
python-setuptools python-wheel))
(native-inputs
(list python-pytest
python-pytest-asyncio
python-setuptools))
(home-page "https://github.com/simonw/asyncinject")
(synopsis
"Run async workflows using pytest-fixtures-style dependency injection")
+321
View File
@@ -9353,6 +9353,10 @@
(crate-source "form_urlencoded" "1.2.2"
"1kqzb2qn608rxl3dws04zahcklpplkd5r1vpabwga5l50d2v4k6b"))
(define rust-formatx-0.2.4
(crate-source "formatx" "0.2.4"
"02m0alndynacid8j6hx7iwpliq13szfhj6xfldzwhgzm72n6z1nq"))
(define rust-four-cc-0.4.0
(crate-source "four-cc" "0.4.0"
"0acnincbs26yjzkmdhw3q22c9dx5v56m1dybgkj7r6j1dp2vyp3r"))
@@ -10040,6 +10044,18 @@
(crate-source "genetlink" "0.2.5"
"17q7zlmp95fx28zjkzh69g6d5q6rm2a3dkj7yy5jk8gsq5v0128z"))
(define rust-geo-0.30.0
(crate-source "geo" "0.30.0"
"1q82kvy988axk2jndfd9xblj42phyha9gnbs7sd7x6fqf5v3j5j4"))
(define rust-geo-types-0.7.18
(crate-source "geo-types" "0.7.18"
"0b58y1467yvxbqsvzgcpzbl0n0zgqr965mbwlhfs2pq0yix69y14"))
(define rust-geographiclib-rs-0.2.5
(crate-source "geographiclib-rs" "0.2.5"
"0hbqkaxb2hld74kswrkf1cza0y53j8g8s4lalwlslzmk5c5084gn"))
(define rust-get-size-derive2-0.6.2
(crate-source "get-size-derive2" "0.6.2"
"1q3l3q3x3nas1qfkglccm9v49rgg0cn7hq7d9llyickqchi7m8bm"))
@@ -14479,6 +14495,26 @@
(crate-source "hyprland-macros" "0.3.4"
"1sz4yhwi7d1s2wfpk9ql43dgmiq0j3j8skmrijpi55lp5vax6hf9"))
(define rust-i-float-1.7.0
(crate-source "i_float" "1.7.0"
"0hw33gz4441yl9x2q7vkipmdrj406svwf5i4vigrbfr9d10kmpw5"))
(define rust-i-key-sort-0.2.0
(crate-source "i_key_sort" "0.2.0"
"1kczb6y1523izrdf0mriaw46y5kb7c9wxjclmy5s58a88wxjaz1l"))
(define rust-i-overlay-2.0.5
(crate-source "i_overlay" "2.0.5"
"0jgfbk1jm95210d4p5qv7svpy55n4l3cqgd0fhhx9zaa33pxyhh5"))
(define rust-i-shape-1.7.0
(crate-source "i_shape" "1.7.0"
"1khv16yyvkp43pvrilpfd9vjkcbr1r56skwjzwc6fwkq4sjgaf0a"))
(define rust-i-tree-0.8.3
(crate-source "i_tree" "0.8.3"
"0f8ic0myw6k6jvkl5rjviqmfk7m1309aaza7z4f1hw6pjyy82l8m"))
(define rust-i18n-config-0.4.7
(crate-source "i18n-config" "0.4.7"
"1j89hnd1d2zqfb1s9jgcd5vzf5a9iisfc18v324mpgn06540g24f"))
@@ -15210,6 +15246,10 @@
(crate-source "inherent" "1.0.13"
"19zv61fmn71kwmdd33nq1c1l5qpw9dpmpw6j10jnwv2az85zh9y7"))
(define rust-ink-stroke-modeler-rs-0.1.0
(crate-source "ink-stroke-modeler-rs" "0.1.0"
"1mmxi6w0b6r6imiggzdk0bi77cwpadpgf57xzkl45kdbsmk3077x"))
(define rust-inkwell-0.2.0
(crate-source "inkwell" "0.2.0"
"1hb9wdh6hfr8shdnx3hda2mrb2vgglqyc94f2ysggf509x5cnkrz"))
@@ -25251,6 +25291,10 @@
"0yqy3h6c13c73519bnwzmiv9nzxyl7sajl6n4q3lvnc4l77x5s0r"
#:snippet '(delete-file-recursively "tests")))
(define rust-robust-1.2.0
(crate-source "robust" "1.2.0"
"0fcqw67hgs1k9parr6rbkhzkjbd1my9n44fb1v7sv80wp65yw9sf"))
(define rust-rocket-0.5.1
(crate-source "rocket" "0.5.1"
"0gypf9z6s0kshv33qq1vf16raw8xnr1p03ii0kfgf7d3jrr905m5"))
@@ -25418,6 +25462,10 @@
(crate-source "rsqlite-vfs" "0.1.0"
"0kap86yzwl355byfs891185h723nxvl746fdp8gnpvrna0qz58d8"))
(define rust-rstar-0.12.2
(crate-source "rstar" "0.12.2"
"1fsx2z2l6nq2fd95g9yvw1a9qvypllq9q6aqb3x6vlng7k8h0522"))
(define rust-rstest-0.19.0
(crate-source "rstest" "0.19.0"
"0c43nsxpm1b74jxc73xwg94is6bwqvfzkrr1xbqyx7j7l791clwx"))
@@ -67177,6 +67225,279 @@
rust-zstd-0.13.3
rust-zstd-safe-7.2.4
rust-zstd-sys-2.0.15+zstd.1.5.7))
(papers =>
(list rust-adler2-2.0.1
rust-aes-0.8.4
rust-aho-corasick-1.1.4
rust-allocator-api2-0.2.21
rust-anstream-0.6.21
rust-anstyle-1.0.13
rust-anstyle-parse-0.2.7
rust-anstyle-query-1.1.5
rust-anstyle-wincon-3.0.11
rust-approx-0.5.1
rust-ashpd-0.12.1
rust-async-broadcast-0.7.2
rust-async-channel-2.5.0
rust-async-executor-1.13.3
rust-async-fs-2.2.0
rust-async-io-2.6.0
rust-async-lock-3.4.2
rust-async-net-2.0.0
rust-async-process-2.5.0
rust-async-recursion-1.1.1
rust-async-signal-0.2.13
rust-async-task-4.7.1
rust-async-trait-0.1.89
rust-atomic-waker-1.1.2
rust-autocfg-1.5.0
rust-bitflags-2.10.0
rust-block-0.1.6
rust-block-buffer-0.10.4
rust-block-padding-0.3.3
rust-blocking-1.6.2
rust-bumpalo-3.19.1
rust-bytemuck-1.24.0
rust-byteorder-1.5.0
rust-byteorder-lite-0.1.0
rust-cairo-rs-0.21.5
rust-cairo-sys-rs-0.21.5
rust-cbc-0.1.2
rust-cc-1.2.54
rust-cfg-expr-0.20.6
rust-cfg-if-1.0.4
rust-cipher-0.4.4
rust-colorchoice-1.0.4
rust-concurrent-queue-2.5.0
rust-cpufeatures-0.2.17
rust-crc32fast-1.5.0
rust-crossbeam-utils-0.8.21
rust-crypto-common-0.1.7
rust-digest-0.10.7
rust-displaydoc-0.2.5
rust-endi-1.1.1
rust-enumflags2-0.7.12
rust-enumflags2-derive-0.7.12
rust-env-filter-0.1.4
rust-env-logger-0.11.8
rust-equivalent-1.0.2
rust-errno-0.3.14
rust-event-listener-5.4.1
rust-event-listener-strategy-0.5.4
rust-fastrand-2.3.0
rust-fdeflate-0.3.7
rust-field-offset-0.3.6
rust-find-msvc-tools-0.1.8
rust-flate2-1.1.8
rust-float-next-after-1.0.0
rust-foldhash-0.2.0
rust-form-urlencoded-1.2.2
rust-formatx-0.2.4
rust-futures-0.3.31
rust-futures-channel-0.3.31
rust-futures-core-0.3.31
rust-futures-executor-0.3.31
rust-futures-io-0.3.31
rust-futures-lite-2.6.1
rust-futures-macro-0.3.31
rust-futures-sink-0.3.31
rust-futures-task-0.3.31
rust-futures-util-0.3.31
rust-gdk-pixbuf-0.21.5
rust-gdk-pixbuf-sys-0.21.5
rust-gdk4-0.10.3
rust-gdk4-sys-0.10.3
rust-generic-array-0.14.7
rust-geo-0.30.0
rust-geo-types-0.7.18
rust-geographiclib-rs-0.2.5
rust-getrandom-0.2.17
rust-getrandom-0.3.4
rust-gettext-rs-0.7.7
rust-gettext-sys-0.26.0
rust-gio-0.21.5
rust-gio-sys-0.21.5
rust-git-version-0.3.9
rust-git-version-macro-0.3.9
rust-glib-0.21.5
rust-glib-macros-0.21.5
rust-glib-sys-0.21.5
rust-gobject-sys-0.21.5
rust-graphene-rs-0.21.5
rust-graphene-sys-0.21.5
rust-gsk4-0.10.3
rust-gsk4-sys-0.10.3
rust-gtk4-0.10.3
rust-gtk4-macros-0.10.3
rust-gtk4-sys-0.10.3
rust-hash32-0.3.1
rust-hashbrown-0.16.1
rust-heapless-0.8.0
rust-heck-0.5.0
rust-hermit-abi-0.5.2
rust-hex-0.4.3
rust-hkdf-0.12.4
rust-hmac-0.12.1
rust-i-float-1.7.0
rust-i-key-sort-0.2.0
rust-i-overlay-2.0.5
rust-i-shape-1.7.0
rust-i-tree-0.8.3
rust-icu-collections-2.1.1
rust-icu-locale-core-2.1.1
rust-icu-normalizer-2.1.1
rust-icu-normalizer-data-2.1.1
rust-icu-properties-2.1.2
rust-icu-properties-data-2.1.2
rust-icu-provider-2.1.1
rust-idna-1.1.0
rust-idna-adapter-1.2.1
rust-image-0.25.9
rust-indexmap-2.13.0
rust-ink-stroke-modeler-rs-0.1.0
rust-inout-0.1.4
rust-is-terminal-polyfill-1.70.2
rust-jiff-0.2.18
rust-jiff-static-0.2.18
rust-js-sys-0.3.85
rust-lazy-static-1.5.0
rust-libadwaita-0.8.1
rust-libadwaita-sys-0.8.1
rust-libc-0.2.180
rust-libm-0.2.16
rust-linux-raw-sys-0.11.0
rust-litemap-0.8.1
rust-locale-config-0.3.0
rust-log-0.4.29
rust-lru-0.16.3
rust-malloc-buf-0.0.6
rust-md-5-0.10.6
rust-memchr-2.7.6
rust-memoffset-0.9.1
rust-miniz-oxide-0.8.9
rust-moxcms-0.7.11
rust-num-0.4.3
rust-num-bigint-0.4.6
rust-num-bigint-dig-0.8.6
rust-num-complex-0.4.6
rust-num-integer-0.1.46
rust-num-iter-0.1.45
rust-num-rational-0.4.2
rust-num-traits-0.2.19
rust-objc-0.2.7
rust-objc-foundation-0.1.1
rust-objc-id-0.1.1
rust-once-cell-1.21.3
rust-once-cell-polyfill-1.70.2
rust-oo7-0.5.0
rust-ordered-stream-0.2.0
rust-pango-0.21.5
rust-pango-sys-0.21.5
rust-parking-2.2.1
rust-pbkdf2-0.12.2
rust-percent-encoding-2.3.2
rust-pin-project-lite-0.2.16
rust-pin-utils-0.1.0
rust-piper-0.2.4
rust-pkg-config-0.3.32
rust-png-0.18.0
rust-polling-3.11.0
rust-portable-atomic-1.13.0
rust-portable-atomic-util-0.2.4
rust-potential-utf-0.1.4
rust-ppv-lite86-0.2.21
rust-proc-macro-crate-3.4.0
rust-proc-macro2-1.0.106
rust-pxfm-0.1.27
rust-quote-1.0.44
rust-r-efi-5.3.0
rust-rand-0.8.5
rust-rand-0.9.2
rust-rand-chacha-0.3.1
rust-rand-chacha-0.9.0
rust-rand-core-0.6.4
rust-rand-core-0.9.5
rust-regex-1.12.2
rust-regex-automata-0.4.13
rust-regex-syntax-0.8.8
rust-robust-1.2.0
rust-rstar-0.12.2
rust-rustc-version-0.4.1
rust-rustix-1.1.3
rust-rustversion-1.0.22
rust-semver-1.0.27
rust-serde-1.0.228
rust-serde-core-1.0.228
rust-serde-derive-1.0.228
rust-serde-repr-0.1.20
rust-serde-spanned-1.0.4
rust-sha2-0.10.9
rust-shell-words-1.1.1
rust-shlex-1.3.0
rust-signal-hook-registry-1.4.8
rust-simd-adler32-0.3.8
rust-slab-0.4.11
rust-smallvec-1.15.1
rust-spin-0.9.8
rust-stable-deref-trait-1.2.1
rust-subtle-2.6.1
rust-syn-2.0.114
rust-synstructure-0.13.2
rust-system-deps-7.0.7
rust-target-lexicon-0.13.3
rust-temp-dir-0.1.16
rust-tempfile-3.24.0
rust-thiserror-2.0.18
rust-thiserror-impl-2.0.18
rust-tinystr-0.8.2
rust-toml-0.9.11+spec-1.1.0
rust-toml-datetime-0.7.5+spec-1.1.0
rust-toml-edit-0.23.10+spec-1.0.0
rust-toml-parser-1.0.6+spec-1.1.0
rust-toml-writer-1.0.6+spec-1.1.0
rust-tracing-0.1.44
rust-tracing-attributes-0.1.31
rust-tracing-core-0.1.36
rust-typenum-1.19.0
rust-uds-windows-1.1.0
rust-unicode-ident-1.0.22
rust-url-2.5.8
rust-utf8-iter-1.0.4
rust-utf8parse-0.2.2
rust-uuid-1.20.0
rust-version-compare-0.2.1
rust-version-check-0.9.5
rust-wasi-0.11.1+wasi-snapshot-preview1
rust-wasip2-1.0.1+wasi-0.2.4
rust-wasm-bindgen-0.2.108
rust-wasm-bindgen-macro-0.2.108
rust-wasm-bindgen-macro-support-0.2.108
rust-wasm-bindgen-shared-0.2.108
rust-winapi-0.3.9
rust-winapi-i686-pc-windows-gnu-0.4.0
rust-winapi-x86-64-pc-windows-gnu-0.4.0
rust-windows-link-0.2.1
rust-windows-sys-0.61.2
rust-winnow-0.7.14
rust-wit-bindgen-0.46.0
rust-writeable-0.6.2
rust-yoke-0.8.1
rust-yoke-derive-0.8.1
rust-zbus-5.14.0
rust-zbus-macros-5.14.0
rust-zbus-names-4.3.1
rust-zerocopy-0.8.35
rust-zerocopy-derive-0.8.35
rust-zerofrom-0.1.6
rust-zerofrom-derive-0.1.6
rust-zeroize-1.8.2
rust-zeroize-derive-1.4.3
rust-zerotrie-0.2.3
rust-zerovec-0.11.5
rust-zerovec-derive-0.11.2
rust-zvariant-5.10.0
rust-zvariant-derive-5.10.0
rust-zvariant-utils-3.3.0))
(parinfer-rust =>
(list rust-addr2line-0.24.2
rust-adler2-2.0.0
+71
View File
@@ -68,6 +68,7 @@
;;; Copyright © 2025 Matthew Elwin <elwin@northwestern.edu>
;;; Copyright © 2025 Roman Scherer <roman@burningswell.com>
;;; Copyright © 2026 Ingar <ingar@onionmail.info>
;;; Copyright © 2026 Nguyễn Gia Phong <cnx@loang.net>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -91,6 +92,7 @@
#:use-module (guix deprecation)
#:use-module (guix gexp)
#:use-module (guix download)
#:use-module (guix fossil-download)
#:use-module (guix git-download)
#:use-module (guix hg-download)
#:use-module (guix build-system cargo)
@@ -111,6 +113,7 @@
#:use-module (gnu packages bash)
#:use-module (gnu packages bison)
#:use-module (gnu packages boost)
#:use-module (gnu packages build-tools)
#:use-module (gnu packages check)
#:use-module (gnu packages crypto)
#:use-module (gnu packages curl)
@@ -3519,6 +3522,74 @@ output of the @code{git} command.")
modification time.")
(license license:bsd-2)))
(define-public libfossil
(let ((ci "914ed6dcaff13bf7209c9f27ccfb77c2d8fdf36b8d2133aa1590258b0708f035")
(revision "0"))
(package
(name "libfossil")
(version (fossil-version "0.6.0" revision ci))
(source
(origin
(method fossil-fetch)
(uri (fossil-reference
(uri "https://fossil.wanderinghorse.net/r/libfossil")
(check-in ci)))
(file-name (fossil-file-name name version))
(sha256
(base32 "0a0ycnnba2izmiqjj8hgvjgjdwhpn0x36lhy3vmw4j7bhny0df52"))
(patches (search-patches "libfossil-skip-amalgamation.patch"))
(modules '((guix build utils)
(ice-9 ftw)
(srfi srfi-26)))
(snippet
#~(begin
(define (delete-all-but directory . preserve)
(with-directory-excursion directory
(let* ((pred (negate (cut member <>
(cons* "." ".." preserve))))
(items (scandir "." pred)))
(for-each (cut delete-file-recursively <>) items))))
(delete-all-but "autosetup" "proj.tcl" "wh-common.tcl")
(delete-file-recursively "extsrc")
;; Re-create Fossil check-out manifests,
;; whose content does not affect in semantics.
(for-each
(lambda (file)
(call-with-output-file file (const #t)))
'("manifest" "manifest.uuid"))))))
(build-system gnu-build-system)
(arguments
(list #:configure-flags
#~(list "--no-debug" "--no-fnc" ;TODO: C++ and Tcl binding?
(string-append "--with-sqlite="
#$(this-package-input "sqlite"))
(string-append "--soname=libfossil.so"))
#:phases
#~(modify-phases %standard-phases
(replace 'configure
(lambda* (#:key configure-flags #:allow-other-keys)
(apply invoke "autosetup"
(string-append "--prefix=" #$output)
configure-flags)))
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
(substitute* "sanity-checks.sh"
;; FIXME: these tests requires a Fossil checkout.
(("\\./f-sanity.*") "")
(("\\./f-parseparty.*") ""))
(setenv "LD_LIBRARY_PATH" (getcwd))
(invoke "./sanity-checks.sh")))))))
(native-inputs (list autosetup))
(inputs (list sqlite-next zlib))
(home-page "https://fossil.wanderinghorse.net/r/libfossil")
(synopsis "Unofficial Fossil SCM Library API")
(description
"@code{libfossil} is an alternative interface into Fossil repositories,
as opposed to a replacement for the core fossil application,
intended for new ways to access and manipulate fossil repositories.")
(license license:bsd-2))))
(define-public fnc
(package
(name "fnc")
+12 -10
View File
@@ -895,16 +895,18 @@ requirements.
If @var{config} contains SMB mounts, adds samba-nmbd and samba-winbindd to the
service requirements.
"
(delete-duplicates
(fold
(lambda (fs-type acc)
(cond
((string= "nfs" fs-type)
(append acc '(rpc.statd)))
((string= "smb" fs-type)
(append acc '(samba-nmbd samba-winbindd)))))
'()
(map autofs-map-entry-type (autofs-configuration->raw-entries config)))))
(fold
(lambda (fs-type acc)
(cond
((string= "nfs" fs-type)
(append acc '(rpc.statd)))
((string= "smb" fs-type)
(append acc '(samba-nmbd samba-winbindd)))
(else acc)))
'()
(delete-duplicates
(map autofs-map-entry-type
(autofs-configuration->raw-entries config)))))
(define (autofs-shepherd-service config)
(match-record config <autofs-configuration> (autofs timeout)
+59
View File
@@ -0,0 +1,59 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2025 Nguyễn Gia Phong <cnx@loang.net>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
;;;
;;; Commentary:
;;;
;;; This is the build-side support code of (guix fossil-download).
;;; It allows a Fossil repository to be opened at a specific revision.
;;;
;;; Code:
(define-module (guix build fossil)
#:use-module (guix build utils)
#:use-module (ice-9 match)
#:use-module (srfi srfi-26)
#:use-module (srfi srfi-34)
#:use-module (srfi srfi-35)
#:use-module (web uri)
#:export (fossil-fetch))
(define* (fossil-fetch uri check-in file #:key (fossil-command "fossil"))
"Fetch CHECK-IN from URI into DIRECTORY. CHECK-IN must be a valid
Fossil check-in name. Return #t on success, else raise an exception."
(setenv "FOSSIL_HOME" "/tmp")
(invoke fossil-command
"tarball" check-in file "-R"
(case (uri-scheme (string->uri-reference uri))
((file https) ;clone the repository first
(match-let ((repository (simple-format #f "/tmp/~a.fossil"
(basename file ".tar.gz")))
((input . output) (pipe)))
;; Trust the TLS certificate of the server,
;; since we'll later verify the tarball's checksum.
(display "y" output)
(close-port output)
(with-input-from-port input
(cut invoke fossil-command "clone"
"--no-open" "--once" uri repository))
(close-port input)
repository))
((ssh) ;TODO: authentication for SSH
(let ((message (string-append "fetching a Fossil repository through SSH"
" is not supported: " uri)))
(raise (condition (&message (message message))))))
((#f) uri)))) ;local file
+125
View File
@@ -0,0 +1,125 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2025 Nguyễn Gia Phong <cnx@loang.net>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
;;;
;;; Commentary:
;;;
;;; An <origin> method that open Fossil checkout at a specific version.
;;; The repository URI and version are specified
;;; with a <fossil-reference> object.
;;;
;;; Code:
(define-module (guix fossil-download)
#:use-module (guix build-system)
#:use-module (guix gexp)
#:use-module (guix modules)
#:use-module (guix monads)
#:use-module (guix packages)
#:use-module (guix records)
#:use-module (guix store)
#:use-module (ice-9 match)
#:use-module (srfi srfi-34)
#:use-module (srfi srfi-35)
#:use-module (web uri)
#:export (fossil-reference
fossil-reference?
fossil-reference-uri
fossil-reference-check-in
fossil-fetch
fossil-version
fossil-file-name))
(define-record-type* <fossil-reference>
fossil-reference make-fossil-reference fossil-reference?
(uri fossil-reference-uri)
(check-in fossil-reference-check-in))
(define (fossil-version version revision check-in)
"Return the version string for packages using fossil-download."
;; fossil-version is almost exclusively executed while modules
;; are being loaded, leading to any errors hiding their backtrace.
;; Avoid the mysterious error "Value out of range 0 to N: 10"
;; when the check-in ID is too short, which can happen, for example,
;; when the user swapped the revision and check-in arguments by mistake.
(when (< (string-length check-in) 10)
(raise
(condition
(&message (message "fossil-version: check-in ID unexpectedly short")))))
(string-append version "-" revision "." (string-take check-in 10)))
(define (fossil-file-name name version)
"Return the file-name for packages using fossil-download."
(string-append name "-" version ".tar.gz"))
(define* (fossil-fetch ref hash-algo hash
#:optional name
#:key (system (%current-system))
(guile (default-guile))
(fossil (@* (gnu packages version-control)
fossil)))
"Return a fixed-output derivation that fetches REF, a <fossil-reference>
object. The output is expected to have recursive hash HASH of type
HASH-ALGO (a symbol). Use NAME as the file name, or a generic name if #f."
(let* ((modules (source-module-closure '((guix build fossil)
(guix build download)
(guix build download-nar))))
(uri (fossil-reference-uri ref))
(scheme-of-uri (uri-scheme (string->uri-reference uri)))
(check-in (fossil-reference-check-in ref))
(tarball-name (or name (fossil-file-name (basename uri) check-in)))
(tarball-url (and (eq? 'https scheme-of-uri)
(simple-format #f "~a/tarball/~a/~a"
uri check-in tarball-name)))
(guile-json (@* (gnu packages guile) guile-json-4))
(gnutls (@* (gnu packages tls) guile-gnutls))
(guile-lzlib (@* (gnu packages guile) guile-lzlib))
(build
(with-imported-modules modules
(with-extensions (list guile-json gnutls ;for (guix swh)
guile-lzlib)
#~(begin
(use-modules (guix build fossil)
((guix build download)
#:select (download-method-enabled? url-fetch))
(guix build download-nar))
(or (and (download-method-enabled? 'upstream)
(or (and #$tarball-url
(url-fetch #$tarball-url #$output))
(fossil-fetch
#$(if scheme-of-uri uri (local-file uri))
#$check-in
#$output
#:fossil-command
#+(file-append fossil "/bin/fossil"))))
(and (download-method-enabled? 'nar)
(download-nar #$output))))))))
(mlet %store-monad ((guile (package->derivation guile system)))
(gexp->derivation tarball-name build
#:leaked-env-vars '("http_proxy" "https_proxy"
"COLUMNS" "USER")
#:env-vars (match (getenv "GUIX_DOWNLOAD_METHODS")
(#f '())
(value
`(("GUIX_DOWNLOAD_METHODS" . ,value))))
#:system system
#:hash-algo hash-algo
#:hash hash
#:recursive? #t
#:guile-for-build guile
#:local-build? #t))))
+4
View File
@@ -2,6 +2,7 @@
;;; Copyright © 2012-2013, 2015-2020, 2022, 2025 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2022 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2022 Remco van 't Veer <remco@remworks.net>
;;; Copyright © 2026 jgart <jgart@dismail.de>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -140,6 +141,9 @@ current one."
(option '("vacuum-database") #f #f
(lambda args
(unless (zero? (getuid))
(leave
(G_ "vacuuming the database can only be used by root~%")))
(vacuum-database)
(exit 0)))