gnu: v4l-utils-minimal: Deprecate.

* gnu/packages/video.scm (v4l-utils-minimal): Deprecate by the
(up to its name) identical v4l-utils.
* gnu/packages/aidc.scm (zbar)[inputs],
* gnu/packages/gstreamer.scm (libdc1394)[inputs],
(gst-plugins-good)[inputs], (gst-plugins-bad)[inputs]: Replace
v4l-utils-minimal by v4l-utils.

Change-Id: I1157adb6d2f1a36ddf2152ca66ed1aeaf55fe322

CODEOWNERS

@@ -68,7 +68,6 @@ guix/discovery\.scm                                @guix/core
 guix/docker\.scm                                   @guix/core
 guix/download\.scm                                 @guix/core
 guix/elf\.scm                                      @guix/core
-guix/fossil-download\.scm                          @guix/core
 guix/ftp-client\.scm                               @guix/core
 guix/gexp\.scm                                     @guix/core
 guix/git-authenticate\.scm                         @guix/core
@@ -334,7 +333,6 @@ guix/build-system/rakudo\.scm                      @guix/perl
 guix/import/cpan\.scm                              @guix/perl
 guix/scripts/import/cpan\.scm                      @guix/perl
 
-gnu/packages/aux-files/python/.*\.py$              @guix/python
 gnu/packages/django\.scm                           @guix/python
 gnu/packages/jupyter\.scm                          @guix/python
 gnu/packages/python(-.+|)\.scm$                    @guix/python
@@ -486,7 +484,6 @@ gnu/services/version-control\.scm                  @guix/vcs
 gnu/tests/version-control\.scm                     @guix/vcs
 guix/build/bzr\.scm                                @guix/vcs
 guix/build/cvs\.scm                                @guix/vcs
-guix/build/fossil\.scm                             @guix/vcs
 guix/build/git\.scm                                @guix/vcs
 guix/build/hg\.scm                                 @guix/vcs
 guix/build/svn\.scm                                @guix/vcs

Makefile.am

@@ -104,7 +104,6 @@ MODULES =					\
   guix/discovery.scm				\
   guix/android-repo-download.scm		\
   guix/bzr-download.scm            		\
-  guix/fossil-download.scm			\
   guix/git-download.scm				\
   guix/hg-download.scm				\
   guix/hash.scm					\
@@ -237,7 +236,6 @@ MODULES =					\
   guix/build/asdf-build-system.scm		\
   guix/build/bzr.scm				\
   guix/build/copy-build-system.scm		\
-  guix/build/fossil.scm				\
   guix/build/git.scm				\
   guix/build/hg.scm				\
   guix/build/glib-or-gtk-build-system.scm	\
@@ -486,7 +484,6 @@ AUX_FILES =						\
   gnu/packages/aux-files/linux-libre/5.10-x86_64.conf	\
   gnu/packages/aux-files/ovmf/51-edk2-ovmf-2m-raw-x64-nosb.json	\
   gnu/packages/aux-files/pack-audit.c			\
-  gnu/packages/aux-files/python/pytest_guix.py		\
   gnu/packages/aux-files/python/sanity-check.py		\
   gnu/packages/aux-files/python/sitecustomize.py	\
   gnu/packages/aux-files/renpy/renpy.in	\

NEWS

@@ -20,9 +20,6 @@ Please send Guix bug reports to bug-guix@gnu.org.
 *** New service for Fossil SCM
 *** TeX Live updated to 2026.1
 
-** Programming interfaces
-*** New (guix fossil-download) module, for fetching Fossil repositories
-
 * Changes in 1.5.0 (since 1.4.0)
 ** Package management
 *** New ‘rpm’ format for the ‘guix pack’ command

doc/guix.texi

@@ -8737,52 +8737,6 @@ The example below denotes a version of gnu-standards to fetch:
 
 @end deftp
 
-For Fossil repositories, the module @code{(guix fossil-download)} defines
-the @code{fossil-fetch} origin method and @code{fossil-reference} data type
-for support of the Fossil @abbr{SCM, software configuration management} system.
-
-@deffn {Procedure} fossil-fetch ref hash-algo hash [name]
-Return a fixed-output derivation that fetches @var{ref}, a
-@code{<fossil-reference>} object.  The output is expected to have recursive
-hash @var{hash} of type @var{hash-algo} (a symbol).  Use @var{name} as
-the file name, or a generic name if @code{#f}.
-@end deffn
-
-@deftp {Data Type} fossil-reference
-This data type represents a Fossil reference
-for @code{fossil-fetch} to retrieve.
-
-@table @asis
-@item @code{uri} (type: string)
-The URI of a Fossil repository to clone, in one of the following forms,
-in which @code{[...]} denotes optional elements:
-
-@table @code
-@item http[s]://[userid[:password]@@]host[:port][/path]
-A HTTP/HTTPS URL.
-@item [file://]path/to/repo.fossil
-A file URI, where the path must have an extra leading @code{/}
-to use an absolute path (without the URI scheme, the repository
-is opened directly without cloning).
-@end table
-
-@item @code{check-in} (type: string)
-A @url{https://fossil-scm.org/home/doc/trunk/www/checkin_names.wiki,
-name of the check-in} to fetch, e.g.@: its canonical hexadecimal identifier,
-associated tag and/or timestamp.
-@end table
-
-The example below denotes the @code{version-3.51.1} tag
-of the SQLite repository:
-
-@lisp
-(fossil-reference
- (uri "https://sqlite.org/src")
- (check-in "version-3.51.1"))
-@end lisp
-
-@end deftp
-
 @node Defining Package Variants
 @section Defining Package Variants
 

etc/teams.scm

@@ -565,7 +565,6 @@ challenges"))
               "guix/docker.scm"
               "guix/download.scm"
               "guix/elf.scm"
-              "guix/fossil-download.scm"
               "guix/ftp-client.scm"
               "guix/gexp.scm"
               "guix/git-authenticate.scm"
@@ -972,8 +971,7 @@ perl-build-system as well as the rakudo-build-system."
         #:description
         "Python, Python packages, the \"pypi\" importer, and the python-build-system."
         #:scope
-        (list (make-regexp* "^gnu/packages/aux-files/python/.*\\.py$")
+        (list "gnu/packages/django.scm"
-              "gnu/packages/django.scm"
               "gnu/packages/jupyter.scm"
               (make-regexp* "^gnu/packages/python(-.+|)\\.scm$")
               "gnu/packages/sphinx.scm"
@@ -1216,7 +1214,6 @@ the \"texlive\" importer."
                       "gnu/tests/version-control.scm"
                       "guix/build/bzr.scm"
                       "guix/build/cvs.scm"
-                      "guix/build/fossil.scm"
                       "guix/build/git.scm"
                       "guix/build/hg.scm"
                       "guix/build/svn.scm")))

etc/teams/tex/tex-manifest.scm

@@ -26,6 +26,7 @@
 
 (define %sundry-texlive-packages
   (list bibtool
+        dvisvgm
         rubber
         texmaker
         texstudio

gnu/local.mk

@@ -1185,7 +1185,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/date-output-pkg-config-files.patch	\
   %D%/packages/patches/dbacl-include-locale.h.patch		\
   %D%/packages/patches/dbacl-icheck-multiple-definitions.patch	\
-  %D%/packages/patches/dblatex-importlib.patch		\
   %D%/packages/patches/dblatex-inkscape-1.0.patch		\
   %D%/packages/patches/dbus-helper-search-path.patch		\
   %D%/packages/patches/ddd-build.patch				\
@@ -1586,9 +1585,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/gtk3-respect-GUIX_GTK3_PATH.patch	\
   %D%/packages/patches/gtk3-respect-GUIX_GTK3_IM_MODULE_FILE.patch \
   %D%/packages/patches/gtk-doc-respect-xml-catalog.patch	\
-  %D%/packages/patches/gtk-doc-mkhtml-test-fix.patch	        \
+  %D%/packages/patches/gtk-doc-mkhtml-test-fix.patch	\
-  %D%/packages/patches/gtk4-demo-reproducible.patch             \
-  %D%/packages/patches/gtk4-needs-udmabuf.patch                 \
   %D%/packages/patches/gtk4-respect-GUIX_GTK4_PATH.patch    	\
   %D%/packages/patches/gtkglext-disable-disable-deprecated.patch \
   %D%/packages/patches/gtksourceview-2-add-default-directory.patch \
@@ -1701,7 +1698,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/libcss-check-format.patch		\
   %D%/packages/patches/libeb-gcc-14.patch			\
   %D%/packages/patches/libextractor-tidy-support.patch		\
-  %D%/packages/patches/libfossil-skip-amalgamation.patch	\
   %D%/packages/patches/libftdi-fix-paths-when-FTDIPP-set.patch	\
   %D%/packages/patches/libgeotiff-fix-tests-with-proj-9.1.1.patch	\
   %D%/packages/patches/libgeotiff-fix-tests-with-proj-9.3.0.patch	\
@@ -2118,12 +2114,10 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-random2-getrandbits-test.patch		\
   %D%/packages/patches/python-pillow-use-zlib-1.3.patch	\
   %D%/packages/patches/python-pydocstyle-add-support-for-pep701.patch	\
-  %D%/packages/patches/python-pynvim-fix-test-command-error.patch	\
   %D%/packages/patches/python-pypytools-python-3-fixes.patch	\
   %D%/packages/patches/python-pyreadstat-link-libiconv.patch	\
   %D%/packages/patches/python-sip-include-dirs.patch	\
   %D%/packages/patches/python-scikit-build-setuptools-compat.patch	\
-  %D%/packages/patches/python-scikit-image-fix-python-pillow.patch	\
   %D%/packages/patches/python-sgmllib3k-assertions.patch	\
   %D%/packages/patches/python-sphobjinv-defer-ssl-import.patch	\
   %D%/packages/patches/python-sphinx-prompt-docutils-0.19.patch	\
@@ -2392,7 +2386,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/rust-1.70-fix-rustix-build.patch	\
   %D%/packages/patches/rust-1.78-unwinding-fix.patch		\
   %D%/packages/patches/rust-1.81-fix-riscv64-bootstrap.patch	\
-  %D%/packages/patches/rust-candle-0.9.1-add-candle-onnx-to-workspace.patch	\
   %D%/packages/patches/rust-codex-0.98.0-core-remove-self-dep.patch	\
   %D%/packages/patches/rust-codex-0.98.0-test-shebangs.patch	\
   %D%/packages/patches/rust-codex-0.98.0-test-timeout.patch	\
@@ -2502,6 +2495,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/texmacs-wayland-hidpi.patch	\
   %D%/packages/patches/tflite-micro_disable_download.patch 	\
   %D%/packages/patches/thefuck-test-environ.patch		\
+  %D%/packages/patches/thefuck-remove-broken-tests.patch	\
   %D%/packages/patches/tidy-CVE-2015-5522+5523.patch		\
   %D%/packages/patches/timewarrior-time-sensitive-tests.patch	\
   %D%/packages/patches/tinydir-fix-cbehave-test.patch		\
@@ -2526,11 +2520,10 @@ dist_patch_DATA =						\
   %D%/packages/patches/ultrastar-deluxe-no-freesans.patch		\
   %D%/packages/patches/unity-test-set-subdir-correctly.patch		\
   %D%/packages/patches/unity-test-support-int64.patch		\
-  %D%/packages/patches/ungoogled-chromium-custom-compiler.patch 	\
-  %D%/packages/patches/ungoogled-chromium-empty-parsed-rustc-args.patch	\
   %D%/packages/patches/ungoogled-chromium-extension-search-path.patch	\
   %D%/packages/patches/ungoogled-chromium-RUNPATH.patch		\
   %D%/packages/patches/ungoogled-chromium-system-nspr.patch	\
+  %D%/packages/patches/ungoogled-chromium-unbundle-icu-target.patch     \
   %D%/packages/patches/unknown-horizons-python-3.8-distro.patch	\
   %D%/packages/patches/unknown-horizons-python-3.9.patch	\
   %D%/packages/patches/unknown-horizons-python-3.10.patch	\
@@ -2631,17 +2624,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/yggdrasil-extra-config.patch	\
   %D%/packages/patches/ypsilon-Use-GNU-toolchain-as-default.patch	\
   %D%/packages/patches/zabbix-agent2-test-timezone-fix.patch	\
-  %D%/packages/patches/zed-0.225.10-add-message-notification-action.patch \
-  %D%/packages/patches/zed-0.225.10-add-guix-container-support.patch	\
-  %D%/packages/patches/zed-0.225.10-collapse-multiline-git-deps.patch	\
-  %D%/packages/patches/zed-0.225.10-exclude-libwebrtc-from-audio.patch		\
-  %D%/packages/patches/zed-0.225.10-disable-dlopen.patch	\
-  %D%/packages/patches/zed-0.225.10-fix-sqlite-memory-mode.patch	\
-  %D%/packages/patches/zed-0.225.10-fix-test-db-isolation.patch	\
-  %D%/packages/patches/zed-0.225.10-fix-workspace-race.patch	\
-  %D%/packages/patches/zed-0.225.10-keep-regular-file-workspaces.patch	\
-  %D%/packages/patches/zed-0.225.10-remove-patch-crates-io.patch	\
-  %D%/packages/patches/zed-0.225.10-use-mock-livekit-on-linux.patch	\
   %D%/packages/patches/zig-0.9-build-respect-PKG_CONFIG-env-var.patch	\
   %D%/packages/patches/zig-0.9-fix-runpath.patch		\
   %D%/packages/patches/zig-0.9-riscv-support.patch		\

gnu/packages/acl.scm

@@ -37,6 +37,7 @@
   #:use-module (gnu packages)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix utils))
 
 (define-public acl

gnu/packages/admin.scm

@@ -109,6 +109,7 @@
   #:use-module (guix build-system go)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system ruby)
@@ -3916,18 +3917,6 @@ rules is done with the @code{auditctl} utility.")
                 (wrap-program (string-append ndiff "/bin/ndiff")
                   `("GUIX_PYTHONPATH" prefix
                     (,(python-path ndiff)))))))
-          (add-before 'check 'fix-tests-for-python-3.12
-            (lambda _
-              (substitute* "ndiff/ndifftest.py"
-                (("import imp")
-                 "import importlib.util")
-                (("ndiff = imp\\.load_source\\(\"ndiff\", \"ndiff\\.py\"\\)")
-                 (string-join
-                  '("spec = \
-importlib.util.spec_from_file_location(\"ndiff\", \"ndiff.py\")"
-                    "ndiff = importlib.util.module_from_spec(spec)"
-                    "spec.loader.exec_module(ndiff)")
-                  "\n")))))
           ;; These are the tests that do not require network access.
           (replace 'check
             (lambda* (#:key tests? #:allow-other-keys)
@@ -4057,59 +4046,51 @@ plug-in architecture to allow monitoring other system metrics.")
     (license license:gpl2+)))
 
 (define-public thefuck
-  ;; Latest release, 3.32, is not compatible with Python 3.12.
+  (package
-  (let ((revision "0")
+    (name "thefuck")
-        (commit "c7e7e1d884d3bb241ea6448f72a989434c2a35ec"))
+    (version "3.32")
-    (package
+    (source
-      (name "thefuck")
+     (origin
-      (version (git-version "3.32" revision commit))
+       (method git-fetch)
-      (source
+       (uri (git-reference
-       (origin
+             (url "https://github.com/nvbn/thefuck")
-         (method git-fetch)
+             (commit version)))
-         (uri (git-reference
+       (file-name (git-file-name name version))
-                (url "https://github.com/nvbn/thefuck")
+       (sha256
-                (commit commit)))
+        (base32 "18ipa1bm6q1n5drbi8i65726hhqhl1g41390lfqrc11hkbvv443d"))
-         (file-name (git-file-name name version))
+       (patches (search-patches "thefuck-test-environ.patch"
-         (sha256
+                                "thefuck-remove-broken-tests.patch"))))
-          (base32 "1l3i2cpdf3vznpbzqw7b18l23xikqs7andx6yzqvm5415snaqg06"))
+    (build-system pyproject-build-system)
-         (patches (search-patches "thefuck-test-environ.patch"))))
+    (arguments
-      (build-system pyproject-build-system)
+     (list
-      (arguments
+      #:phases
-       (list
+      #~(modify-phases %standard-phases
-        #:test-flags
+          (add-before 'check 'pre-check
-        #~(list
+            (lambda _
-           "--deselect=tests/test_utils.py::TestGetValidHistoryWithoutCurrent"
+              ;; Tests look for installed package
-           "--ignore=tests/functional/conftest.py")
+              ;; Some tests need write access to $HOME.
-        #:phases
+              (setenv "HOME" "/tmp")
-        #~(modify-phases %standard-phases
+              ;; Even with that, this function tries to mkdir /.config.
-            (add-before 'check 'pre-check
+              (substitute* "tests/test_utils.py"
-              (lambda _
+                (("settings\\.init\\(\\)") "")))))))
-                ;; ModuleNotFoundError: No module named 'pytest_docker_pexpect'
+    (native-inputs
-                (delete-file "tests/functional/conftest.py")
+     (list go
-                ;; Tests look for installed package
+           python-mock
-                ;; Some tests need write access to $HOME.
+           python-pytest-8
-                (setenv "HOME" "/tmp")
+           python-pytest-mock
-                ;; Even with that, this function tries to mkdir /.config.
+           python-setuptools
-                (substitute* "tests/test_utils.py"
+           python-wheel))
-                  (("settings\\.init\\(\\)") "")))))))
+    (inputs
-      (native-inputs
+     (list python-colorama
-       (list go
+           python-decorator
-             python-mock
+           python-psutil
-             ;; Uses test markers that are incompatible with pytest 9.
+           python-pyte))
-             python-pytest-8
+    (home-page "https://github.com/nvbn/thefuck")
-             python-pytest-mock
+    (synopsis "Correct mistyped console command")
-             python-setuptools))
+    (description
-      (inputs
+     "The Fuck tries to match a rule for a previous, mistyped command, creates
-       (list python-colorama
-             python-decorator
-             python-psutil
-             python-pyte))
-      (home-page "https://github.com/nvbn/thefuck")
-      (synopsis "Correct mistyped console command")
-      (description
-       "The Fuck tries to match a rule for a previous, mistyped command, creates
 a new command using the matched rule, and runs it.")
-      (license license:x11))))
+    (license license:x11)))
 
 (define-public di
   (package

gnu/packages/algebra.scm

@@ -88,6 +88,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system pyproject)
+  #:use-module ((guix build-system python) #:select (pypi-uri))
   #:use-module (guix build-system r)
   #:use-module (guix download)
   #:use-module (guix gexp)

gnu/packages/android.scm

@@ -41,6 +41,7 @@
   #:use-module (guix build-system emacs)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system go)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system trivial)
@@ -764,7 +765,7 @@ file system.")
        (sha256
         (base32 "0r3xwk8xsfxvmxyw3d57sy2i9by24g0l1jl40735jiac9mypcg7n"))))
     (build-system pyproject-build-system)
-    (propagated-inputs (list python-requests python-argcomplete python-urllib3
+    (inputs (list python-requests python-argcomplete python-urllib3
                   python-looseversion gnupg))
     (native-inputs (list python-setuptools python-wheel python-requests-cache
                          python-defusedxml))
@@ -772,7 +773,8 @@ file system.")
      (list $SSL_CERT_FILE))
     (arguments
      (list
-      #:test-backend #~'unittest
+      #:test-flags
+      #~(list "-k" "test_*")
       #:phases
       #~(modify-phases %standard-phases
           (add-after 'unpack 'patch-tests
@@ -791,7 +793,11 @@ file system.")
             (lambda _
               (substitute* "sdkmanager.py"
                 (("gpgv")
-                 (string-append #$(this-package-input "gnupg") "/bin/gpgv"))))))))
+                 (string-append #$(this-package-input "gnupg") "/bin/gpgv")))))
+          (replace 'check
+            (lambda* (#:key tests? test-flags #:allow-other-keys)
+              (when tests?
+                (apply invoke "python" "-m" "unittest" test-flags)))))))
     (home-page "https://gitlab.com/fdroid/sdkmanager")
     (synopsis "Replacement for Android sdkmanager written in Python")
     (description
@@ -1176,16 +1182,14 @@ for communicating with Xiaomi smart appliances over miIO and MIoT protocols.")
 (define-public fdroidserver
   (package
     (name "fdroidserver")
-    (version "2.4.3")
+    (version "2.4.2")
     (source
      (origin
-       (method git-fetch)
+       (method url-fetch)
-       (uri (git-reference
+       (uri (pypi-uri "fdroidserver" version))
-              (url "https://gitlab.com/fdroid/fdroidserver")
-              (commit version)))
-       (file-name (git-file-name name version))
        (sha256
-        (base32 "1745fqxr2qfrls4wr6x9w1262b9pxmw9yvzd9b71ya2qmj74q17n"))))
+        (base32
+         "06xybginrwi5c7bw000wz5s5hzi0aqrxskzwh8qc6wv463w2djax"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -1196,17 +1200,22 @@ for communicating with Xiaomi smart appliances over miIO and MIoT protocols.")
             (lambda _
               (setenv "HOME" "/tmp"))))))
     (propagated-inputs
-     (list python-platformdirs
+     (list python-androguard
-           python-androguard
            python-apache-libcloud
+           python-argcomplete
            python-asn1crypto
            python-clint
            python-defusedxml
+           python-docker
            python-gitpython
+           python-mwclient
            python-oscrypto
            python-paramiko
            python-pillow
+           python-platformdirs
            python-puremagic
+           python-pyasn1
+           python-pyasn1-modules
            python-pyyaml
            python-qrcode
            python-requests

gnu/packages/astronomy.scm

@@ -37,6 +37,7 @@
 
 (define-module (gnu packages astronomy)
   #:use-module ((guix licenses) #:prefix license:)
+  #:use-module ((guix build-system python) #:select (pypi-uri)) ;to be removed soon
   #:use-module (guix build-system ant)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system copy)
@@ -3789,6 +3790,10 @@ bad pixel tracking throughout the reduction process.")
       #~(list "-m" "not remote_data")
       #:phases
       #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-pytest-config
+            (lambda _
+              (substitute* "pyproject.toml"
+                ((" --cov=cdflib --cov-report=xml") ""))))
           (add-before 'check 'set-home-env
             (lambda _
               (setenv "HOME" (getcwd)))))))
@@ -4420,6 +4425,7 @@ Cesium.")
     (native-inputs
      (list python-pydot
            python-pytest
+           python-pytest-cov
            python-pytest-asdf-plugin
            python-pytest-doctestplus
            python-pytest-filter-subpackage
@@ -4944,6 +4950,7 @@ files.")
     (build-system pyproject-build-system)
     (native-inputs
      (list python-pytest
+           python-pytest-cov
            python-setuptools
            python-setuptools-scm
            python-wheel))
@@ -5505,6 +5512,7 @@ across many files.")
      (list python-mock
            python-objgraph
            python-pytest
+           python-pytest-cov
            ;; python-pytest-faulthandler
            python-setuptools
            python-wheel
@@ -6318,6 +6326,19 @@ files.")
                  (string-append
                   "from astropy.units.core import Unit, UnitBase\n"
                   "from astropy.units.errors import UnitTypeError\n")))))
+          (add-after 'unpack 'relax-requirements
+            (lambda _
+              (substitute* "pyproject.toml"
+                ;; RuntimeError: Unable to detect version control
+                ;; system. Checked: Git. Not installed: Mercurial, Darcs,
+                ;; Subversion, Bazaar, Fossil, Pijul.  See
+                ;; <https://github.com/blacklanternsecurity/bbot/issues/1257>.
+                (("enable = true") "enable = false"))))
+          (add-before 'build 'set-version
+            (lambda _
+              ;; TODO: Include in pyproject-build-system.
+              (setenv "POETRY_DYNAMIC_VERSIONING_BYPASS"
+                      #$(version-major+minor+point version))))
           (add-before 'check 'prepare-test-environment
             (lambda _
               (setenv "HOME" "/tmp"))))))
@@ -9902,7 +9923,13 @@ implemented in the @acronym{JWST, James Webb Space Telescope} and
                             "test_step.py::test_build_config_pipe_kwarg"
                             "test_step.py::test_build_config_step_config_file"
                             "test_step.py::test_build_config_step_kwarg"
-                            "test_step.py::test_step_list_args")))))
+                            "test_step.py::test_step_list_args")))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'set-version
+            (lambda _
+              (setenv "SETUPTOOLS_SCM_PRETEND_VERSION"
+                      #$(version-major+minor+point version)))))))
     (native-inputs
      (list python-pytest
            python-pytest-doctestplus
@@ -10910,6 +10937,7 @@ cosmological simulations.")
     (build-system pyproject-build-system)
     (propagated-inputs (list python-numpy python-scipy))
     (native-inputs (list python-pytest
+                         python-pytest-cov
                          python-pytest-doctestplus
                          python-setuptools-scm
                          python-wheel))

gnu/packages/audio.scm

@@ -62,7 +62,6 @@
 ;;; Copyright © 2026 Luis Guilherme Coelho <lgcoelho@disroot.org>
 ;;; Copyright © 2026 Noé Lopez <noelopez@free.fr>
 ;;; Copyright © 2026 Carlos Durán Domínguez <wurt@wurt.eu>
-;;; Copyright © 2026 Daniel Martins <email@danielfm.me>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -179,6 +178,7 @@
   #:use-module (guix build-system glib-or-gtk)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system trivial)
@@ -3237,27 +3237,30 @@ synchronous execution of all clients, and low latency operation.")
   (package
     (inherit jack-1)
     (name "jack2")
-    ;; 1.9.22 does not compile with Python 3.12, use the latest commit instead.
+    (version "1.9.21")
-    (properties '((commit . "17959465a722225a36a8b612aed26764036f258e")
-                  (revision . "0")))
-    (version (git-version "1.9.22"
-                          (assoc-ref properties 'revision)
-                          (assoc-ref properties 'commit)))
     (source (origin
               (method git-fetch)
               (uri (git-reference
-                     (url "https://github.com/jackaudio/jack2")
+                    (url "https://github.com/jackaudio/jack2")
-                     (commit (assoc-ref properties 'commit))))
+                    (commit (string-append "v" version))))
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "18dbjq9y8mcp27j9aaqdlg4976hrisr7b88lk84ck09gmzlwqalp"))))
+                "0sbrffmdbajvrk7iqvsvrnwnpvmicvbjyq3f52r6ashdsznsz03b"))))
     (build-system waf-build-system)
     (arguments
      `(#:tests? #f                      ; no check target
        #:configure-flags '("--dbus" "--alsa")
        #:phases
        (modify-phases %standard-phases
+         ;; Python 3.11 has removed the 'U' (universal newline) mode.  It has
+         ;; been the default since Python 3.3.
+         (add-after 'unpack 'python-compatibility
+           (lambda _
+             (substitute* '("waflib/Context.py"
+                            "waflib/ConfigSet.py")
+               (("m='rU'") "m='r'")
+               (("read\\('rU'") "read('r'"))))
          (add-before 'configure 'set-linkflags
            (lambda _
              ;; Ensure -lstdc++ is the tail of LDFLAGS or the simdtests.cpp
@@ -3283,7 +3286,7 @@ synchronous execution of all clients, and low latency operation.")
            expat
            libsamplerate
            opus
-           python-dbus
+           python-dbus-1.2
            readline))
     (native-inputs
      (list pkg-config))
@@ -3700,44 +3703,6 @@ compensation, (de)interleaving, and byte-swapping
     ;; original developer.
     (license license:expat)))
 
-(define-public rtcqs
-  (package
-    (name "rtcqs")
-    (version "0.6.7")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://codeberg.org/rtcqs/rtcqs")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1kc3niyaq4m8di68832pgfb1b0m54q5gm68dwlzwwilgxi61ifzc"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:tests? #f ;no test suite
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'remove-gui
-            (lambda _
-              (substitute* "pyproject.toml"
-                (("\"FreeSimpleGUI\",?")
-                 "")
-                (("rtcqs_gui = \"rtcqs\\.rtcqs_gui:main\"")
-                 ""))
-              (delete-file "src/rtcqs/rtcqs_gui.py")
-              (delete-file "src/rtcqs/rtcqs_qt_gui.py"))))))
-    (native-inputs (list python-setuptools))
-    (home-page "https://codeberg.org/rtcqs/rtcqs")
-    (synopsis "Linux audio real-time performance analyzer")
-    (description
-     "rtcqs analyzes a Linux system to detect possible bottlenecks that could
-have a negative impact on real-time audio performance.  It checks kernel
-configuration, IRQ priorities, CPU governor, swappiness, and other settings
-relevant to low-latency audio work.")
-    (license license:expat)))
-
 (define-public rtosc
   (package
     (name "rtosc")
@@ -4086,7 +4051,9 @@ one-dimensional sample-rate conversion library.")
                  (string-append "'" #$(this-package-input "libsndfile")
                                 "/lib/libsndfile"))))))))
     (native-inputs
-     (list python-pytest python-setuptools))
+     (list python-pytest
+           python-pytest-cov
+           python-setuptools))
     (inputs
      (list libsndfile
            portaudio))
@@ -7815,59 +7782,60 @@ Rate} 3600x2250 bit/s vocoder used in various radio systems.")
                   (delete-file-recursively "third_party")
                   (delete-file-recursively "modules")))))
     (build-system cmake-build-system)
-    (arguments
-     (list
-      #:configure-flags
-      #~(list "-DLINK_BUILD_QT_EXAMPLES=ON"
-              "-DLINK_BUILD_JACK=ON")
-      #:phases
-      #~(modify-phases %standard-phases
-          (replace 'check
-            (lambda* (#:key inputs tests? #:allow-other-keys)
-              (when tests?
-                (let* ((python (search-input-file inputs "/bin/python3"))
-                       (run-tests "../source/ci/run-tests.py"))
-                  (invoke python run-tests "--target" "LinkCoreTest")
-                  (invoke python run-tests "--target" "LinkDiscoveryTest")))))
-          (add-before 'install 'patch-cmake
-            (lambda* (#:key inputs #:allow-other-keys)
-              (let* ((source "../source/"))
-                (substitute* (string-append source
-                                            "cmake_include/AsioStandaloneConfig.cmake")
-                  (((string-append "\\$\\{CMAKE_CURRENT_LIST_DIR\\}/\\.\\./"
-                                   "modules/asio-standalone/asio/include"))
-                   (dirname (search-input-file inputs "include/asio.hpp"))))
-                (substitute* (string-append source "AbletonLinkConfig.cmake")
-                  (("\\$\\{CMAKE_CURRENT_LIST_DIR\\}/include")
-                   "${CMAKE_CURRENT_LIST_DIR}/../../../include")
-                  (("\\$\\{CMAKE_CURRENT_LIST_DIR\\}/include/ableton/Link\\.hpp")
-                   "${CMAKE_CURRENT_LIST_DIR}/../../../include/ableton/Link.hpp")))))
-          (replace 'install
-            (lambda _
-              (let* ((out #$output)
-                     (lib-cmake (string-append out "/lib/cmake/ableton-link"))
-                     (source "../source"))
-                (for-each delete-file
-                          '("bin/LinkDiscoveryTest" "bin/LinkCoreTest"))
-                (copy-recursively "bin" (string-append out "/bin"))
-                (copy-recursively (string-append source "/include/ableton")
-                                  (string-append out "/include/ableton"))
-                (install-file (string-append source "/AbletonLinkConfig.cmake")
-                              lib-cmake)
-                (install-file (string-append source
-                                             "/cmake_include/AsioStandaloneConfig.cmake")
-                              (string-append lib-cmake "/cmake_include"))))))))
     (native-inputs
      (list catch-framework
-           portaudio                    ;for portaudio examples
+           python ;for running tests
-           python                       ;for running tests
+           portaudio)) ;for portaudio examples
-           python-setuptools))          ;for running tests
     (inputs
      (list jack-1)) ;for JACK examples
     (propagated-inputs
      ;; This is because include/ableton/platforms/asio/AsioWrapper.hpp
      ;; contains '#include <asio.hpp>'.
      (list asio-1.28))
+    (arguments
+     `(#:configure-flags
+       '("-DLINK_BUILD_QT_EXAMPLES=ON"
+         "-DLINK_BUILD_JACK=ON")
+       #:phases
+       (modify-phases %standard-phases
+         (replace 'check
+           (lambda* (#:key inputs tests? #:allow-other-keys)
+             (when tests?
+               (let* ((python (search-input-file inputs "/bin/python3"))
+                      (run-tests "../source/ci/run-tests.py"))
+                 (invoke python run-tests "--target" "LinkCoreTest")
+                 (invoke python run-tests "--target" "LinkDiscoveryTest")))))
+         (add-before 'install 'patch-cmake
+           (lambda* (#:key inputs #:allow-other-keys)
+             (let* ((source "../source/"))
+               (substitute* (string-append source
+                                           "cmake_include/AsioStandaloneConfig.cmake")
+                 (((string-append "\\$\\{CMAKE_CURRENT_LIST_DIR\\}/\\.\\./"
+                                  "modules/asio-standalone/asio/include"))
+                  (string-append (assoc-ref inputs "asio")
+                                 "/include")))
+               (substitute* (string-append source "AbletonLinkConfig.cmake")
+                 (("\\$\\{CMAKE_CURRENT_LIST_DIR\\}/include")
+                  "${CMAKE_CURRENT_LIST_DIR}/../../../include")
+                 (("\\$\\{CMAKE_CURRENT_LIST_DIR\\}/include/ableton/Link\\.hpp")
+                  "${CMAKE_CURRENT_LIST_DIR}/../../../include/ableton/Link.hpp")))))
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (bin (string-append out "/bin"))
+                    (lib-cmake (string-append out "/lib/cmake/ableton-link"))
+                    (source "../source"))
+               (for-each (lambda (test-file)
+                           (delete-file test-file))
+                         '("bin/LinkDiscoveryTest" "bin/LinkCoreTest"))
+               (copy-recursively "bin" bin)
+               (copy-recursively (string-append source "/include/ableton")
+                                 (string-append out "/include/ableton"))
+               (install-file (string-append source "/AbletonLinkConfig.cmake")
+                             lib-cmake)
+               (install-file (string-append source
+                                            "/cmake_include/AsioStandaloneConfig.cmake")
+                             (string-append lib-cmake "/cmake_include"))))))))
     (home-page "https://github.com/Ableton/link")
     (synopsis "Synchronize musical beat, tempo, and phase across multiple applications")
     (description
@@ -8053,7 +8021,7 @@ as sample rate, determining whether an audio file is silent, and much more.")
     (propagated-inputs
      (list python-numba python-numpy python-scipy python-six))
     (native-inputs
-     (list python-pytest python-setuptools python-wheel))
+     (list python-pytest python-pytest-cov python-setuptools python-wheel))
     (home-page "https://github.com/bmcfee/resampy")
     (synopsis "Efficient signal resampling")
     (description
@@ -8083,7 +8051,8 @@ Home Page}.")
      (list
       #:test-flags
       ;; Ignore --mpl flag.
-      '(list "-k" (string-append
+      '(list "-c" "/dev/null"
+             "-k" (string-append
                    ;; Resampling tests require python-samplerate.
                    "not resample"
                    ;; These tests use Pooch and download data files.
@@ -8108,6 +8077,7 @@ Home Page}.")
      (list python-matplotlib
            python-packaging
            python-pytest
+           python-pytest-cov
            python-resampy
            python-setuptools
            python-wheel))

gnu/packages/aux-files/python/pytest_guix.py

@@ -1,58 +0,0 @@
-# GNU Guix --- Functional package management for GNU
-# Copyright © 2025 Nicolas Graves <ngraves@ngraves.fr>
-#
-# This file is part of GNU Guix.
-#
-# GNU Guix is free software; you can redistribute it and/or modify it
-# under the terms of the GNU General Public License as published by
-# the Free Software Foundation; either version 3 of the License, or (at
-# your option) any later version.
-#
-# GNU Guix is distributed in the hope that it will be useful, but
-# WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
-
-import importlib.util
-import json
-
-
-def pytest_addoption(parser):
-    """Add stub options to be ignored by pytest.
-
-    More precisely, inject all options provided in .pytest_guix_options.json,
-    except options whose plugin is indeed installed.
-
-    For example, if the json file records --cov:
-      if the pytest_cov module is installed, its --cov will be used.
-      otherwise, --cov is ignored (read by this parser, but nothing is done
-      with it).
-
-    Flags can be given with additional keyword arguments in a json object.
-    If the json object is not given, fallback to the default
-    {"action": "append", "nargs": "?"}.  In practice, these arguments are only
-    mandatory for the store_true and store_const actions to avoid eating other
-    arguments.
-
-    This allows to remove development packages, which are not required at build
-    time while at the same time avoiding the need to adjust test options in
-    pyproject.toml or other configuration files.
-    """
-    with open(".pytest_guix_options.json", "r") as options_file:
-        plugin_options = json.load(options_file)
-        group = parser.getgroup(
-            "guix", "Options ignored by the Guix pyproject-build-system"
-        )
-
-        # Only add options for plugins that are not present.
-        for key, options in plugin_options.items():
-            if importlib.util.find_spec(f"pytest_{key}") is None:
-                # Plugin not found, add stub options
-                for option, kwargs in options.items():
-                    if kwargs:
-                        group.addoption(option, **kwargs)
-                    else:
-                        group.addoption(option, action="append", nargs="?")

gnu/packages/backup.scm

@@ -50,6 +50,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system go)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix download)
   #:use-module (guix gexp)
@@ -106,7 +107,6 @@
   #:use-module (gnu packages rsync)
   #:use-module (gnu packages ruby-xyz)
   #:use-module (gnu packages serialization)
-  #:use-module (gnu packages sphinx)
   #:use-module (gnu packages ssh)
   #:use-module (gnu packages time)
   #:use-module (gnu packages tls)
@@ -137,6 +137,7 @@
            python-paramiko
            python-pexpect
            python-pytest
+           python-pytest-runner
            python-setuptools-scm
            tzdata-for-tests
            python-mock))
@@ -631,26 +632,41 @@ rsnapshot uses hard links to deduplicate identical files.")
 (define-public borg
   (package
     (name "borg")
-    (version "1.4.4")
+    (version "1.4.3")
     (source
      (origin
-       (method git-fetch)
+       (method url-fetch)
-       (uri (git-reference
+       (uri (pypi-uri "borgbackup" version))
-              (url "https://github.com/borgbackup/borg")
-              (commit version)))
-       (file-name (git-file-name name version))
        (sha256
-        (base32 "0bk302lbjjz1y8dg78wqqys80bm7mzkj5yf6wgyqdwvbqpsnpim4"))))
+        (base32 "07s4jqcv03s98hi6lvqpvmnnhl532qnvv11mjy2xc08rbmsgmfvr"))
+       (snippet
+        #~(begin
+            ;; Delete files generated by Cython.  We used to have a regex that
+            ;; created the list of generated files but Borg has added new
+            ;; non-generated C files that cause the regex to generate the
+            ;; wrong list.
+            (for-each delete-file
+                      '("src/borg/algorithms/checksums.c"
+                        "src/borg/chunker.c"
+                        "src/borg/compress.c"
+                        "src/borg/crypto/low_level.c"
+                        "src/borg/hashindex.c"
+                        "src/borg/item.c"
+                        "src/borg/platform/darwin.c"
+                        "src/borg/platform/freebsd.c"
+                        "src/borg/platform/linux.c"
+                        "src/borg/platform/posix.c"
+                        "src/borg/platform/syncfilerange.c"
+                        "src/borg/platform/windows.c"))))))
     (build-system pyproject-build-system)
     (arguments
      (list
       #:modules '((srfi srfi-26)        ; for cut
                   (guix build utils)
                   (guix build pyproject-build-system))
-      ;; tests: 1318 passed, 293 skipped
       #:test-flags
       #~(list "--benchmark-skip"
-              "--numprocesses" (number->string (min 8 (parallel-job-count)))
+              "--numprocesses" (number->string (parallel-job-count))
               "--pyargs" "borg.testsuite"
               "-k" (string-join
                     ;; These tests need to write to '/var'.
@@ -671,15 +687,7 @@ rsnapshot uses hard links to deduplicate identical files.")
                           "test_mount_hardlinks "
                           "test_readonly_mount "
                           "test_fuse_versions_view "
-                          "test_migrate_lock_alive"
+                          "test_migrate_lock_alive")
-                          ;; Test files are not in /gnu/store
-                          "test_convert_all[False]"
-                          "test_convert_all[True]"
-                          "test_convert_segments[False]"
-                          "test_convert_segments[True]"
-                          "test_detect_attic_repo"
-                          "test_key_export_qr"
-                          "test_keys")
                     " and not "))
       #:phases
       #~(modify-phases %standard-phases
@@ -695,58 +703,46 @@ rsnapshot uses hard links to deduplicate identical files.")
                 (setenv "BORG_LIBLZ4_PREFIX" lz4)
                 (setenv "BORG_LIBXXHASH_PREFIX" xxhash)
                 (setenv "BORG_LIBZSTD_PREFIX" zstd))))
-          (add-before 'build 'fix-testsuite-setuid-mode
+          (add-after 'install 'install-doc
             (lambda _
-              (substitute* "src/borg/testsuite/archiver.py"
+              (let ((man (string-append #$output "/share/man/man1"))
-                (("0o4755") "0o0755"))))
+                    (misc (string-append #$output "/share/doc/borg-"
-          (add-after 'install 'build-and-install-docs
+                                         #$(package-version this-package))))
-            (lambda _
-              (let* ((doc (string-append #$output "/share/doc/borg-" #$version))
-                     (html (string-append doc "/html"))
-                     (txt (string-append doc "/txt"))
-                     (misc (string-append doc "/misc"))
-                     (man (string-append #$output "/share/man/man1")))
-                (with-directory-excursion "docs"
-                  (invoke "make" "text" "man" "singlehtml"))
                 (for-each (cut install-file <> misc)
                           '("docs/misc/create_chunker-params.txt"
                             "docs/misc/borg-data-flow.png"
                             "docs/misc/internals-picture.txt"
                             "docs/misc/prune-example.txt"))
-                (copy-recursively "docs/_build/man" man)
+                (copy-recursively "docs/man" man))))
-                (copy-recursively "docs/_build/singlehtml" html)
+          (add-after 'install-doc 'install-shell-completions
-                (copy-recursively "docs/_build/text" txt))))
-          (add-after 'build-and-install-docs 'install-shell-completions
             (lambda _
-              (let* ((etc (string-append #$output "/etc"))
+              (let ((etc (string-append #$output "/etc"))
-                     (share (string-append #$output "/share"))
+                    (share (string-append #$output "/share")))
-                     (bash (string-append etc "/bash_completion.d"))
-                     (zsh (string-append share "/zsh/site-functions"))
-                     (fish (string-append share "/fish/vendor_completions.d")))
                 (with-directory-excursion "scripts/shell_completions"
-                  (install-file "bash/borg" bash)
+                  (install-file "bash/borg"
-                  (install-file "zsh/_borg" zsh)
+                                (string-append etc "/bash_completion.d"))
-                  (install-file "fish/borg.fish" fish))))))))
+                  (install-file "zsh/_borg"
+                                (string-append share "/zsh/site-functions"))
+                  (install-file "fish/borg.fish"
+                                (string-append share "/fish/vendor_completions.d")))))))))
     (native-inputs
      (list python-cython
-           python-guzzle-sphinx-theme
+           python-dateutil
-           python-pkgconfig
            python-pytest
            python-pytest-benchmark
            python-pytest-xdist
            python-setuptools
            python-setuptools-scm
-           python-sphinx
+           python-wheel))
-           python-sphinxcontrib-jquery))
     (inputs
      (list acl
            lz4
            openssl
-           python-msgpack
+           ;; This is the latest version of msgpack accepted by 'setup.py'.
+           python-msgpack-for-borg
            ;; FUSE 3 isn't working well, so we stick with FUSE 2 for now:
            ;; <https://issues.guix.gnu.org/53407>
            python-llfuse
-           python-packaging
            xxhash
            `(,zstd "lib")))
     (synopsis "Deduplicated, encrypted, authenticated and compressed backups")
@@ -1303,6 +1299,7 @@ compression parameters used by Gzip.")
     (native-inputs
      (list python-flexmock
            python-pytest
+           python-pytest-cov
            python-setuptools
            python-wheel))
     (inputs
@@ -1366,9 +1363,9 @@ borgmatic is powered by borg.")
             (assoc-ref qt:%standard-phases 'qt-wrap)))))
     (native-inputs
      (list python-platformdirs
-           python-pytest
            python-pytest-mock
            python-pytest-qt
+           python-pytest-runner
            python-setuptools
            python-setuptools-git))
     (inputs

gnu/packages/benchmark.scm

@@ -42,6 +42,7 @@
   #:use-module (guix search-paths)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system meson)
   #:use-module (gnu packages)

gnu/packages/bioinformatics.scm

@@ -65,6 +65,7 @@
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system r)
   #:use-module (guix build-system ruby)
@@ -2287,6 +2288,7 @@ version = ~s
                   (delete-file-recursively
                    (string-append #$output "/.pytest_cache")))))))))
     (native-inputs (list python-pytest
+                         python-pytest-cov
                          python-pytest-datadir
                          python-pytest-doctestplus
                          python-recommonmark
@@ -3377,36 +3379,35 @@ encountered in PDB files prior to simulation tasks.")
 (define-public python-peaks2utr
   (package
     (name "python-peaks2utr")
-    (version "1.5.0")
+    (version "1.4.1")
-    (source
+    (source (origin
-     (origin
+              (method url-fetch)
-       (method git-fetch)
+              (uri (pypi-uri "peaks2utr" version))
-       (uri (git-reference
+              (sha256
-              (url "https://github.com/haessar/peaks2utr")
+               (base32
-              (commit (string-append "v" version))))
+                "104il0kk61q07b58g9xrss7xflwlbx4kzsmw9iih99lhfsii0wzg"))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1b4qiccp5j394pzqd1d4ss3k90zv3kdr84lykl6p8izn3k85b2bl"))))
     (build-system pyproject-build-system)
     (arguments
      (list
+      #:test-flags
+      ;; These tests fail because file names are not URLs.
+      '(list "-k" (string-join
+                   (list "not test_forward_strand_annotations"
+                         "test_matching_chr"
+                         "test_reverse_strand_annotations")
+                   " and not "))
       #:phases
-      #~(modify-phases %standard-phases
+      '(modify-phases %standard-phases
-          (add-after 'unpack 'relax-requirements
+         (add-after 'unpack 'relax-requirements
-            (lambda _
+           (lambda _
-              (substitute* "setup.cfg"
+             (substitute* "setup.cfg"
-                (("==") ">=")
+               (("==") ">=")))))))
-                ;; See: <https://github.com/haessar/peaks2utr/issues/47>.
-                (("numpy >= 1.21.4, <= 1.26.4") "numpy >= 1.21.4")))))))
-    (native-inputs
-     (list python-pytest
-           python-setuptools))
     (propagated-inputs
      (list python-asgiref
            python-gffutils
            python-importlib-resources
-           macs-3
+           macs
-           python-numpy
+           python-numpy-1
            python-psutil
            python-pybedtools
            python-pysam
@@ -3414,6 +3415,7 @@ encountered in PDB files prior to simulation tasks.")
            python-tqdm
            python-typing-extensions
            python-zipp))
+    (native-inputs (list python-setuptools python-wheel))
     (home-page "https://github.com/haessar/peaks2utr")
     (synopsis "Python CLI for annotating three prime UTR")
     (description
@@ -3862,6 +3864,7 @@ raw/ed14e050b2b75e7f4ddb73d512fbe928bbdb2b85")
            python-scipy))
     (native-inputs
      (list python-pytest
+           python-pytest-cov
            python-pytest-datadir
            python-pytest-doctestplus
            python-setuptools
@@ -4287,6 +4290,7 @@ e.g. microbiome samples, genomes, metagenomes.")
     (native-inputs
      (list python-cython
            python-pytest
+           python-pytest-cov
            python-setuptools
            python-wheel))
     (propagated-inputs
@@ -6962,6 +6966,7 @@ and v1.1 to v1.2.")
      (list python-mypy-extensions
            python-pytest
            python-pytest-mock
+           python-pytest-runner
            python-setuptools
            python-wheel))
     (propagated-inputs
@@ -8841,8 +8846,7 @@ high-throughput sequencing (HTS) assays")
          ;; Needed by tests
          (add-after 'unpack 'set-HOME
            (lambda _ (setenv "HOME" "/tmp"))))))
-    (propagated-inputs (list mysql-connector-python
+    (propagated-inputs (list python-appdirs
-                             python-appdirs
                              python-biopython
                              python-click
                              python-colorama
@@ -8850,6 +8854,7 @@ high-throughput sequencing (HTS) assays")
                              python-filelock
                              python-loguru
                              python-mygene
+                             python-mysql-connector-python
                              python-norns
                              python-numpy
                              python-pandas
@@ -9805,39 +9810,29 @@ sequencing tag position and orientation.")
 (define-public macs-3
   (package
     (name "macs")
-    (version "3.0.4")
+    (version "3.0.3")
-    (source
+    (source (origin
-     (origin
+              (method git-fetch)
-       (method git-fetch)
+              (uri (git-reference
-       (uri (git-reference
+                    (url "https://github.com/macs3-project/MACS")
-              (url "https://github.com/macs3-project/MACS")
+                    (commit (string-append "v" version))
-              (commit (string-append "v" version))
+                    (recursive? #true)))
-              (recursive? #true)))
+              (file-name (git-file-name name version))
-       (file-name (git-file-name name version))
+              (sha256
-       (sha256
+               (base32
-        (base32 "16cv6bvvppi0z69r5l357ai8x4jg61rx8xrvcapk1wz6mh9naf5s"))))
+                "08hi0a2a0md9gfg7jc75wxv69rggv2yqfd1hyrg4mi5bhi712m0v"))))
     (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:test-flags
-      ;; AssertionError: np.float32(1.0) != np.float64(-1.0)
-      ;; calculated step by step:
-      ;;  6.559423e-18
-      ;; expected:
-      ;;  -2.98155597e-18
-      #~(list (string-append "--deselect=test/test_SignalProcessing.py::"
-                             "Test_maxima::test_implement_smooth_here"))))
-    (native-inputs
-     (list python-cython
-           python-pytest
-           python-setuptools
-           zlib))
     (propagated-inputs
      (list python-cykhash
            python-hmmlearn
            python-numpy
            python-scikit-learn
            python-scipy))
+    (native-inputs
+     (list python-cython
+           python-pytest
+           python-setuptools
+           zlib))
     (home-page "https://github.com/macs3-project/MACS")
     (synopsis "Model based analysis for ChIP-Seq data")
     (description
@@ -14310,7 +14305,11 @@ quality control are provided.")
             (lambda _
               (substitute* "setup.cfg"
                 (("intervaltree~=3.0.2") "intervaltree")
-                (("termcolor~=1.1.0") "termcolor")))))))
+                (("termcolor~=1.1.0") "termcolor"))))
+          (add-after 'unpack 'fix-pytest-config
+            (lambda _
+              (substitute* "pyproject.toml"
+                ((" --cov=gdc_client --cov-report term") "")))))))
     (native-inputs
      (list python-flask
            python-httmock
@@ -20231,7 +20230,13 @@ fasta subsequences.")
               " and not test_roundtrip"
               ;; This test depends on ipytree, which contains a lot of
               ;; minified JavaScript.
-              " and not test_print_trees"))))
+              " and not test_print_trees"))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-pytest-config
+            (lambda _
+              (substitute* "pyproject.toml"
+                ((".*--cov.*") "")))))))
     (native-inputs
      (list python-hatchling
            python-pytest))

gnu/packages/bittorrent.scm

@@ -86,6 +86,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix download)
   #:use-module (guix gexp)
@@ -532,9 +533,8 @@ and will take advantage of multiple processor cores where possible.")
     (inputs (list boost-1.83 openssl))
     (native-inputs
      (list libfaketime
-           pkg-config
+           python-wrapper
-           python-setuptools
+           pkg-config))
-           python-wrapper))
     (home-page "https://www.libtorrent.org/")
     (synopsis "Feature-complete BitTorrent implementation")
     (description

gnu/packages/boost.scm

@@ -83,6 +83,9 @@
     (build-system gnu-build-system)
     (arguments
      (list
+      #:imported-modules %pyproject-build-system-modules
+      #:modules `(((guix build pyproject-build-system) #:select (python-version))
+                  ,@%default-gnu-modules)
       #:tests? #f
       #:configure-flags
       #~(let ((icu (dirname (dirname (search-input-file
@@ -91,26 +94,17 @@
            ;; Auto-detection looks for ICU only in traditional
            ;; install locations.
            (string-append "--with-icu=" icu)
-           ;; Ditto for Python.  The Gexp can't be evaluated if python is not
+           ;; Ditto for Python.
-           ;; in the inputs (e.g. boost-for-mysql), so delay its evaluation
+           #$@(if (%current-target-system)
-           ;; after checking for python, rather than concurrently.
+                  #~()
-           #$@(force
+                  #~((let ((python (dirname (dirname (search-input-file
-               (if (or (%current-target-system)
+                                                      %build-inputs
-                       (not (this-package-input "python-minimal-wrapper")))
+                                                      "bin/python")))))
-                   (delay
+                       (string-append "--with-python-root=" python)
-                     #~())
+                       (string-append "--with-python=" python
-                   (delay
+                                      "/bin/python")
-                     #~((let ((python (dirname (dirname (search-input-file
+                       (string-append "--with-python-version="
-                                                         %build-inputs
+                                      (python-version python)))))
-                                                         "bin/python")))))
-                          (string-append "--with-python-root=" python)
-                          (string-append "--with-python=" python
-                                         "/bin/python")
-                          (string-append "--with-python-version="
-                                         #$(version-major+minor
-                                            (package-version
-                                             (this-package-input
-                                              "python-minimal-wrapper")))))))))
            "--with-toolset=gcc"))
       #:make-flags
       #~(list "threading=multi" "link=shared"
@@ -206,39 +200,29 @@
           (replace 'install
             (lambda* (#:key make-flags #:allow-other-keys)
               (apply invoke "./b2" "install" make-flags)))
-          #$@(force  ; See above for why the force is necessary.
+          #$@(if (%current-target-system)
-              (if (or (%current-target-system)
+                 #~()
-                      (not (this-package-input "python-minimal-wrapper")))
+                 #~((add-after 'install 'provide-libboost_python
-                  (delay
+                      (lambda* (#:key make-flags inputs outputs #:allow-other-keys)
-                    #~())
+                        (let* ((static? (member "link=static" make-flags))
-                  (delay
+                               (libext (if static? ".a" ".so"))
-                    #~((add-after 'install 'provide-libboost_python
+                               (python (dirname (dirname (search-input-file
-                         (lambda* (#:key make-flags inputs outputs
+                                                          inputs "bin/python"))))
-                                   #:allow-other-keys)
+                               (python-version (python-version python))
-                           (let* ((static? (member "link=static" make-flags))
+                               (libboost_pythonNN
-                                  (ext (if static? ".a" ".so"))
+                                (string-append "libboost_python"
-                                  (python (dirname
+                                               (string-join (string-split
-                                           (dirname (search-input-file
+                                                             python-version #\.)
-                                                     inputs "bin/python"))))
+                                                            "")
-                                  (python-version
+                                               libext)))
-                                   #$(version-major+minor
+                          (with-directory-excursion (string-append #$output "/lib")
-                                      (package-version
+                            (symlink libboost_pythonNN
-                                       (this-package-input
+                                     (string-append "libboost_python" libext))
-                                        "python-minimal-wrapper"))))
+                            ;; Some packages only look for the major version.
-                                  (NN (string-join (string-split
+                            (symlink libboost_pythonNN
-                                                    python-version #\.)
+                                     (string-append "libboost_python"
-                                                   ""))
+                                                    (string-take python-version 1)
-                                  (libboost_pythonNN
+                                                    libext)))))))))))
-                                   (string-append "libboost_python" NN ext))
-                                  (major (string-take python-version 1)))
-                             (with-directory-excursion
-                                 (string-append #$output "/lib")
-                               (symlink libboost_pythonNN
-                                        (string-append "libboost_python" ext))
-                               ;; Some packages only look for the major version.
-                               (symlink libboost_pythonNN
-                                        (string-append "libboost_python"
-                                                       major ext)))))))))))))
     (inputs
      (append
       (list icu4c zlib)

gnu/packages/browser-extensions.scm

@@ -95,8 +95,8 @@ supported content to the Kodi media center.")
   ;; Arbitrary commit of branch master,
   ;; Update when updating uBlockOrigin.
   (let* ((name "ublock-main-assets")
-         (commit "004af606e6a0efc22bc65ab1016b553441cacb71")
+         (commit "011eef4a5b36a7ebf4adedc486d96b77cfa25c54")
-         (revision "6")
+         (revision "5")
          (version (git-version "0" revision commit)))
     (origin
       (method git-fetch)
@@ -105,14 +105,14 @@ supported content to the Kodi media center.")
             (commit commit)))
       (file-name (git-file-name name version))
       (sha256
-       (base32 "1bfd2d53flrkgvjcr1kj9nbxj4y9a4pcr7m3dycccdhd21x6k0ln")))))
+       (base32 "0ng8a88zdvrxg30fz83gswjy27b3hfx9q11n2i715id7az7kqf9x")))))
 
 (define ublock-prod-assets
   ;; Arbitrary commit of branch gh-pages,
   ;; Update when updating uBlockOrigin.
   (let* ((name "ublock-prod-assets")
-         (commit "6c15e4ef91888c610caf73829dc78ae9549ed24a")
+         (commit "6844322800de647da0c4fe06dd6a0b212a3942e4")
-         (revision "6")
+         (revision "5")
          (version (git-version "0" revision commit)))
     (origin
       (method git-fetch)
@@ -121,12 +121,12 @@ supported content to the Kodi media center.")
             (commit commit)))
       (file-name (git-file-name name version))
       (sha256
-       (base32 "0n2h6drqh44b1zgl729bfr70n08mkm536a2vqgivw7dm5dmi8zd3")))))
+       (base32 "13vxq4z1wxivz5xklncxd2sj5aqkyhq919vzbbfp0fgh0imhikib")))))
 
 (define ublock-origin
   (package
     (name "ublock-origin")
-    (version "1.70.0")
+    (version "1.66.2")
     (home-page "https://github.com/gorhill/uBlock")
     (source (origin
               (method git-fetch)
@@ -136,7 +136,7 @@ supported content to the Kodi media center.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0j1m80nz86yc69c42hv5di5zza0vkycqmjaydb9jgx0abcvi19x5"))))
+                "16ph031hb8bf4rxyxvm6jr0bxmy0snza11jfrbjgfb390gax9r63"))))
     (build-system gnu-build-system)
     (outputs '("xpi" "firefox" "chromium"))
     (properties '((addon-id . "uBlock0@raymondhill.net")))

gnu/packages/build-tools.scm

@@ -94,6 +94,7 @@
   #:use-module (guix build-system hare)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system trivial)
   #:use-module (guix deprecation)
   #:use-module (guix download)
@@ -344,8 +345,8 @@ programs and other files depend.")
     (license license:bsd-3)))
 
 (define-public gn
-  (let ((commit "6e8dcdebbadf4f8aa75e6a4b6e0bdf89dce1513a")
+  (let ((commit "ee5b7e32b961a9da1933e9f46a018ba6cac8ef60")
-        (revision "2354"))            ;as returned by `git describe`, used below
+        (revision "2277"))            ;as returned by `git describe`, used below
     (package
       (name "gn")
       (version (git-version "0.0" revision commit))
@@ -355,7 +356,7 @@ programs and other files depend.")
                 (uri (git-reference (url home-page) (commit commit)))
                 (sha256
                  (base32
-                  "0yz38czmbc72q1hkiv3cwxqh2i8ji2vkkvvk5ws2cjplmn2vj0x9"))
+                  "19kkvwxl66vlzlfppbq03fmi59i5g8a1yc71fsfgwqqmx4wywd6w"))
                 (file-name (git-file-name name version))))
       (build-system gnu-build-system)
       (arguments
@@ -365,8 +366,7 @@ programs and other files depend.")
                    (lambda _
                      (setenv "CC" "gcc")
                      (setenv "CXX" "g++")
-                     (setenv "CXXFLAGS"
+                     (setenv "CXXFLAGS" "-g -O2 -Wno-error=redundant-move")
-                             "-g -O2 -Wno-error=redundant-move -Wno-error=comment")
                      (setenv "AR" "ar")))
                  (replace 'configure
                    (lambda _
@@ -431,8 +431,9 @@ files and generates build instructions for the Ninja build system.")
     (arguments
      (list
       #:tests? #f                       ;disabled to avoid extra dependencies
-      ;; Custom build steps to prevent using pyproject-build-system which
+      ;; Essentially a lighter copy of the former python-build-system.
-      ;; allows to edit the latter without a C++ world rebuild.
+      ;; Using it rather than pyproject-build-system allows to edit the latter
+      ;; without a C++ world rebuild.
       #:phases
       #~(modify-phases %standard-phases
           (delete 'bootstrap)

gnu/packages/c.scm

@@ -54,6 +54,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix store)
   #:use-module (gnu packages)
   #:use-module (gnu packages bash)

gnu/packages/calendar.scm

@@ -45,6 +45,7 @@
   #:use-module (guix build-system go)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system pyproject)
+  #:use-module ((guix build-system python) #:select (pypi-uri))
   #:use-module (gnu packages admin)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages base)

gnu/packages/check.scm

@@ -131,6 +131,7 @@
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system trivial)
   #:use-module (ice-9 match)
   #:use-module (srfi srfi-1))
@@ -1881,6 +1882,7 @@ http server.")
     (arguments (list #:tests? #false)) ;no tests included
     (native-inputs
      (list python-pytest
+           python-pytest-cov
            python-setuptools
            python-wheel
            python-xmlschema))
@@ -1913,6 +1915,42 @@ XML output")
 decorators from external files.")
     (license license:expat)))
 
+(define-public python-pytest-random-order
+  (package
+    (name "python-pytest-random-order")
+    (version "1.1.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "pytest-random-order" version))
+       (sha256
+        (base32 "104hww3b86jchk41kjhyycr541pd2dfgqkww6lx5y70z9z9xfwj4"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      ;; AttributeError: module 'py' has no attribute 'code'.
+      #~(list "-k" (string-append "not test_it_works_with_actual_tests"
+                                  " and not test_failed_first"
+                                  " and not test_doctests"))))
+    (native-inputs
+     (list python-pytest-xdist
+           python-setuptools
+           python-py
+           python-wheel))
+    (propagated-inputs
+     (list python-pytest))
+    (home-page "https://github.com/jbasko/pytest-random-order")
+    (synopsis "Pytest plugin to randomize the order of tests")
+    (description "@code{pytest-random-order} is a Pytest plugin that
+randomizes the order of tests.  This can be useful to detect a test that
+passes just because it happens to run after an unrelated test that leaves the
+system in a favourable state.  The plugin allows user to control the level of
+randomness they want to introduce and to disable reordering on subsets of
+tests.  Tests can be rerun in a specific order by passing a seed value
+reported in a previous test run.")
+    (license license:expat)))
+
 (define-public python-pytest-runner
   (package
     (name "python-pytest-runner")
@@ -2918,8 +2956,12 @@ mypy plugins.")
                            "and not upstream_url"))))
     (native-inputs
      (list python-pytest
+           python-pytest-black
            python-pytest-checkdocs
+           python-pytest-cov
            python-pytest-enabler
+           python-pytest-flake8
+           python-pytest-mypy
            python-setuptools
            python-wheel))
     (propagated-inputs
@@ -3044,6 +3086,7 @@ possible to write plugins to add your own checks.")
            python-path
            python-pyhamcrest
            python-pytest
+           python-pytest-html
            python-setuptools))
     (propagated-inputs
      (list python-colorama

gnu/packages/chemistry.scm

@@ -28,6 +28,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix download)
   #:use-module (guix gexp)
   #:use-module (guix git-download)
@@ -825,7 +826,7 @@ colleagues, or to generate pre-rendered animations.")
 (define-public python-pyscf
   (package
     (name "python-pyscf")
-    (version "2.12.1")
+    (version "2.9.0")
     (source
      (origin
        (method git-fetch)
@@ -834,10 +835,14 @@ colleagues, or to generate pre-rendered animations.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "00q5c0r5yzp05m65679164s7jzm9678b63msm8g7953vh8v9g25y"))))
+        (base32 "1lj48c749aqf9zd5xbshjsfr0y972r2nsm8lf3760jbfadg9jdsi"))))
     (build-system pyproject-build-system)
     (arguments
      (list
+      #:modules
+      '((guix build pyproject-build-system)
+        (guix build utils)
+        (ice-9 textual-ports))
       ;; Some tests take a very long time and libxc support is not enabled.
       #:tests? #f
       #:phases
@@ -863,8 +868,16 @@ colleagues, or to generate pre-rendered animations.")
                          "-DBUILD_XCFUN=OFF"
                          "-DBUILD_LIBCINT=OFF"))))))))
     (native-inputs
-     (list cmake-minimal
+     (list
-           python-setuptools))
+      cmake-minimal
+      ;; HACK: Add gcc, make tune work.
+      ;; build-system-with-tuning-compiler on guix/transformations.scm
+      ;; want to find compiler on the build-inputs, but gcc is on the
+      ;; python-build-system's host-inputs, so when tune it , will report:
+      ;; "failed to determine which compiler is used"
+      (canonical-package gcc)
+      python-setuptools
+      python-wheel))
     (inputs
      (list
       ;; Use qcint when tuning for x86_64.

gnu/packages/chromium.scm

@@ -79,13 +79,11 @@
   '("base/third_party/cityhash" ;Expat
     "base/third_party/double_conversion" ;BSD-3
     "base/third_party/icu" ;Unicode, X11-style
-    "base/third_party/nspr" ;MPL-2.0
     "base/third_party/superfasthash" ;BSD-3
     "base/third_party/symbolize" ;BSD-3
     "base/third_party/xdg_user_dirs" ;Expat
-    "buildtools/third_party/libc++" ;BSD
-    "buildtools/third_party/libc++abi" ;BSD
     "net/third_party/mozilla_security_manager" ;MPL-1.1/GPL2+/LGPL2.1+
+    "net/third_party/nss" ;MPL-2.0
     "net/third_party/quiche" ;BSD-3
     "net/third_party/uri_template" ;ASL2.0
     "third_party/abseil-cpp" ;ASL2.0
@@ -106,11 +104,8 @@
     "third_party/catapult" ;BSD-3
     "third_party/catapult/common/py_vulcanize/third_party/rcssmin" ;ASL2.0
     "third_party/catapult/common/py_vulcanize/third_party/rjsmin" ;ASL2.0
-    "third_party/catapult/third_party/beautifulsoup4-4.9.3" ;Expat
-    "third_party/catapult/third_party/html5lib-1.1" ;Expat
     "third_party/catapult/third_party/polymer" ;BSD-3
     "third_party/catapult/third_party/six" ;Expat
-    "third_party/catapult/third_party/typ" ;ASL2.0
     ;; XXX: This is a minified version of <https://d3js.org/>.
     "third_party/catapult/tracing/third_party/d3" ;BSD-3
     "third_party/catapult/tracing/third_party/gl-matrix" ;Expat
@@ -125,12 +120,19 @@
     "third_party/cld_3" ;ASL2.0
     "third_party/closure_compiler" ;ASL2.0
     "third_party/compiler-rt" ;ASL2.0
+    "third_party/compiler-rt/src/lib" ;ASL2.0
+    "third_party/compiler-rt/src/lib/builtins" ;ASL2.0
     "third_party/content_analysis_sdk" ;BSD-3
     "third_party/cpuinfo" ;BSD-2
     "third_party/crabbyavif" ;ASL2.0
+    "third_party/crabbyavif/src/sys/dav1d-sys" ;ASL2.0
+    "third_party/crabbyavif/src/sys/aom-sys" ;ASL2.0
+    "third_party/crabbyavif/src/sys/libgav1-sys" ;ASL2.0
+    "third_party/crabbyavif/src/sys/libyuv-sys" ;ASL2.0
+    "third_party/crabbyavif/src/sys/ndk-sys" ;ASL2.0
     "third_party/crashpad" ;ASL2.0
     "third_party/crashpad/crashpad/third_party/lss" ;ASL2.0
-    "third_party/crashpad/crashpad/third_party/zlib" ;Zlib
+    "third_party/crashpad/crashpad/third_party/zlib/zlib_crashpad.h" ;Zlib
     "third_party/crc32c" ;BSD-3
     "third_party/cros_system_api" ;BSD-3
     "third_party/dav1d" ;BSD-2
@@ -138,25 +140,19 @@
     ;; TODO: can likely be unbundled when Vulkan is updated.
     "third_party/dawn/third_party/khronos" ;ASL2.0
     "third_party/dawn/third_party/gn/webgpu-cts" ;BSD-3
-    "third_party/dawn/third_party/renderdoc" ;Expat
-    "third_party/dawn/third_party/webgpu-headers" ;BSD-3
-    "third_party/depot_tools" ;BSD-3
-    "third_party/devscripts" ;GPL2.0
     "third_party/devtools-frontend" ;BSD-3
     "third_party/devtools-frontend/src/front_end"
     "third_party/devtools-frontend/src/front_end/third_party"
     "third_party/devtools-frontend/src/front_end/third_party/acorn" ;Expat
     "third_party/devtools-frontend/src/front_end/third_party\
 /additional_readme_paths.json" ;no explicit license; trivial
+    "third_party/devtools-frontend/src/front_end/third_party/json5" ;Expat
     "third_party/devtools-frontend/src/front_end/third_party/axe-core" ;MPL2.0
     "third_party/devtools-frontend/src/front_end/third_party/chromium" ;BSD-3
     "third_party/devtools-frontend/src/front_end/third_party/codemirror" ;Expat
-    "third_party/devtools-frontend/src/front_end/third_party/csp_evaluator" ;BSD-3
     "third_party/devtools-frontend/src/front_end/third_party/diff" ;ASL2.0
     "third_party/devtools-frontend/src/front_end/third_party/i18n" ;ASL2.0
     "third_party/devtools-frontend/src/front_end/third_party/intl-messageformat" ;BSD-3
-    "third_party/devtools-frontend/src/front_end/third_party/json5" ;Expat
-    "third_party/devtools-frontend/src/front_end/third_party/legacy-javascript" ;ASL-2.0
     "third_party/devtools-frontend/src/front_end/third_party/lighthouse" ;ASL2.0
     "third_party/devtools-frontend/src/front_end/third_party/lit" ;BSD-3
     "third_party/devtools-frontend/src/front_end/third_party/marked" ;Expat, BSD-3
@@ -168,12 +164,10 @@
     "third_party/devtools-frontend/src/front_end/third_party/puppeteer/third_party/parsel" ; Expat
     "third_party/devtools-frontend/src/front_end/third_party/puppeteer/third_party/rxjs" ; ASL2.0
     "third_party/devtools-frontend/src/front_end/third_party/puppeteer-replay" ;ASL2.0
-    "third_party/devtools-frontend/src/front_end/third_party/source-map-scopes-codec" ;BSD-3
     "third_party/devtools-frontend/src/front_end/third_party\
 /vscode.web-custom-data" ;Expat
     "third_party/devtools-frontend/src/front_end/third_party/third-party-web" ;Expat
     "third_party/devtools-frontend/src/front_end/third_party/wasmparser" ;ASL2.0
-    "third_party/devtools-frontend/src/front_end/third_party/web-vitals" ;Expat
     "third_party/devtools-frontend/src/third_party/i18n" ;ASL2.0
     "third_party/devtools-frontend/src/third_party/pyjson5" ;ASL2.0
 
@@ -185,7 +179,6 @@
     "third_party/farmhash" ;Expat
     "third_party/fast_float" ;ASL2.0, Boost1.0, Expat
     "third_party/fdlibm" ;non-copyleft
-    "third_party/federated_compute/chromium/fcp/confidentialcompute" ;ASL2.0
     "third_party/federated_compute/src/fcp/base" ;ASL2.0
     "third_party/federated_compute/src/fcp/confidentialcompute" ;ASL2.0
     "third_party/federated_compute/src/fcp/protos/confidentialcompute" ;ASL2.0
@@ -194,9 +187,7 @@
     "third_party/fft2d" ;non-copyleft
     "third_party/flatbuffers" ;ASL2.0
     "third_party/fp16" ;Expat
-    "third_party/freetype" ;GPL2.0
     "third_party/fusejs" ;ASL2.0
-    "third_party/fxdiv" ;Expat
     "third_party/gemmlowp" ;ASL2.0
     "third_party/google_input_tools" ;ASL2.0
     "third_party/google_input_tools/third_party/closure_library" ;ASL2.0
@@ -205,9 +196,6 @@
     "third_party/harfbuzz-ng" ;Expat
     "third_party/highway" ;ASL2.0
     "third_party/hunspell" ;MPL1.1/GPL2+/LGPL2.1+
-    "third_party/hyphenation-patterns" ;Expat
-    ;; FIXME: Our icu does not have some headers such as udatamem.h.
-    "third_party/icu" ;Unicode3.0
     "third_party/ink" ;ASL2.0
     "third_party/ink_stroke_modeler" ;ASL2.0
     "third_party/inspector_protocol" ;BSD-3
@@ -220,14 +208,12 @@
     "third_party/libaddressinput" ;ASL2.0
     "third_party/libaom" ;BSD-2 or "Alliance for Open Media Patent License 1.0"
     "third_party/libaom/source/libaom/third_party/fastfeat" ;BSD-3
+    "third_party/libaom/source/libaom/third_party/SVT-AV1" ;BSD-3
     "third_party/libaom/source/libaom/third_party/vector" ;Expat
     "third_party/libaom/source/libaom/third_party/x86inc" ;ISC
-    "third_party/libc++" ;Expat
     "third_party/libdrm" ; Expat
     "third_party/libgav1" ;ASL2.0
     "third_party/libjingle_xmpp" ;BSD-3
-    "third_party/libpfm4" ;BSD
-    "third_party/libpng" ;PNG2.0
     "third_party/libphonenumber" ;ASL2.0
     "third_party/libsecret" ;LGPL2.1+
     "third_party/libsrtp" ;BSD-3
@@ -241,15 +227,11 @@
     "third_party/libvpx/source/libvpx/third_party/x86inc" ;Expat
 
     "third_party/libwebm" ;BSD-3
-    "third_party/libx11" ;BSD
-    "third_party/libxcb-keysyms" ;BSD
     "third_party/libxml/chromium" ;BSD-3
     "third_party/libyuv" ;BSD-3
     "third_party/libzip" ;BSD-3
     "third_party/lit" ;BSD-3
     "third_party/lit/v3_0" ;BSD-3
-    "third_party/llvm-libc" ;ASL2.0
-    "third_party/llvm-libc/src/shared" ;ASL2.0
     "third_party/lottie" ;Expat
     "third_party/lss" ;BSD-3
     "third_party/lzma_sdk" ;public domain
@@ -262,7 +244,6 @@
     "third_party/modp_b64" ;BSD-3
     "third_party/nasm" ;BSD-2
     "third_party/nearby" ;ASL2.0
-    "third_party/neon_2_sse" ;BSD-2
     "third_party/node" ;Expat
     "third_party/oak/chromium/proto" ;ASL2.0
     "third_party/oak/chromium/proto/attestation" ;ASL2.0
@@ -270,20 +251,14 @@
     "third_party/one_euro_filter" ;BSD-3
     "third_party/openscreen" ;BSD-3
     "third_party/openscreen/src/third_party/tinycbor" ;Expat
-    "third_party/opus" ;BSD-3
     "third_party/ots" ;BSD-3
     "third_party/pdfium" ;BSD-3
     "third_party/pdfium/third_party/agg23" ;Expat
     "third_party/pdfium/third_party/bigint" ;Public domain, BSD-3
-    "third_party/pdfium/third_party/lcms" ;Expat
-    "third_party/pdfium/third_party/libopenjpeg" ;BDS-2
     "third_party/pdfium/third_party/libtiff" ;non-copyleft
     "third_party/pdfium/third_party/freetype/include/pstables.h" ;FreeType
     "third_party/perfetto" ;ASL2.0
     "third_party/perfetto/protos/third_party/chromium" ;BSD-3
-    "third_party/perfetto/protos/third_party/pprof" ;ASL2.0
-    "third_party/perfetto/protos/third_party/primes" ;ASL2.0
-    "third_party/perfetto/protos/third_party/simpleperf" ;ASL2.0
     "third_party/pffft" ;the "FFTPACK" license
     "third_party/ply" ;BSD-3
     "third_party/polymer" ;BSD-3
@@ -293,7 +268,6 @@
     "third_party/protobuf/third_party/utf8_range" ; Expat
     "third_party/pthreadpool" ;BSD-2
     "third_party/puffin" ;Non-copyleft
-    "third_party/pyyaml" ;Expat
     "third_party/pyjson5" ;ASL2.0
     "third_party/rapidhash" ;BSD-2
     "third_party/readability" ;ASL2.0
@@ -305,14 +279,11 @@
     "third_party/search_engines_data" ;BSD-3
     "third_party/securemessage" ;ASL2.0
     "third_party/selenium-atoms" ;ASL2.0
-    "third_party/sentencepiece" ;ASL2.0
-    "third_party/sentencepiece/src/third_party/darts_clone" ;BSD-3
     "third_party/shell-encryption" ;ASL2.0
     "third_party/simdutf" ;Non-copyleft
     "third_party/simplejson" ; Non-copyleft
-    "third_party/six" ;Expat
     "third_party/skia" ;BSD-3
-    "third_party/skia/include/third_party/vulkan" ;BSD-3
+    "third_party/skia/third_party/vulkanmemoryallocator" ;BSD-3, Expat
     "third_party/smhasher" ;Expat, public domain
 
     ;; FIXME: the snappy "replacement" shim (see replace_gn_files.py below) does
@@ -367,6 +338,7 @@
     "third_party/webrtc/modules/third_party/fft" ;Non-copyleft
     "third_party/webrtc/modules/third_party/g711" ;Public domain
     "third_party/webrtc/modules/third_party/g722" ;Public domain
+    "third_party/webrtc/rtc_base/third_party/sigslot" ;Public domain
     "third_party/widevine/cdm/widevine_cdm_common.h" ;BSD-3
     "third_party/woff2" ;ASL2.0
     "third_party/wuffs" ;ASL2.0
@@ -400,7 +372,7 @@
   ;; run the Blink performance tests, just remove everything to save ~70MiB.
   '("third_party/blink/perf_tests"))
 
-(define %chromium-version "147.0.7727.55")
+(define %chromium-version "141.0.7390.65")
 (define %ungoogled-revision (string-append %chromium-version "-1"))
 (define %debian-revision (string-append "debian/" %ungoogled-revision))
 
@@ -412,7 +384,7 @@
     (file-name (git-file-name "ungoogled-chromium" %ungoogled-revision))
     (sha256
      (base32
-      "0l6v4wf16067igawjlh90f3d287mkw0cq4j5lvrxxy17y1skynzc"))))
+      "1hk4rww2gccly1qv0xnswd77haj02rlza82403dxdjm8fkdfndy6"))))
 
 (define %debian-origin
   (origin
@@ -425,7 +397,7 @@
                                 ((_ version) version))))
     (sha256
      (base32
-      "0gqarll08i7rcs1amapciv263xvzglc8p44ikavq3xd12yyvcd98"))))
+      "06s3kvwb3490xb28n6r3q5n1c0ylsvchiw6s4h1rrp8jqzwjbmc6"))))
 
 (define (origin-file origin file)
   (computed-file
@@ -438,38 +410,26 @@
 
 (define %debian-patches
   (map debian-patch
-       '("bookworm/foreach.patch"
+       '("bookworm/clang19.patch"
-         "debianization/safe-libcxx.patch"
+         "bookworm/foreach.patch"
-         "disable/enterprise-tests.patch"
          "disable/node-version-ck.patch"
-         "disable/rustc-allow-features.patch"
-         "fixes/bytemuck.patch"
          "fixes/gentoo-stylesheet.patch"
          "fixes/libcpp-headers.patch"
-         "fixes/libpng-testonly.patch"
          "fixes/rust-clanglib.patch"
-         "llvm-19/clang19.patch"
-         "llvm-19/clone-traits.patch"
-         "llvm-19/keyfactory.patch"
-         "llvm-19/value-or.patch"
-         "llvm-22/ignore-for-ubsan.patch"
          "system/openjpeg.patch"
-         "trixie/cookie-string-view.patch"
+         ;; Remove after rust is past
-         "trixie/nodejs-main.patch")))
+         ;; <https://github.com/rust-lang/rust/pull/141061>.
+         "trixie/rust-no-alloc-shim.patch")))
 
 (define %guix-patches
   (list (local-file
-         (assume-valid-file-name
-          (search-patch
-           "ungoogled-chromium-custom-compiler.patch")))
-        (local-file
-         (assume-valid-file-name
-          (search-patch
-           "ungoogled-chromium-empty-parsed-rustc-args.patch")))
-        (local-file
          (assume-valid-file-name
           (search-patch
            "ungoogled-chromium-extension-search-path.patch")))
+        (local-file
+         (assume-valid-file-name
+          (search-patch
+           "ungoogled-chromium-unbundle-icu-target.patch")))
         (local-file
          (assume-valid-file-name
           (search-patch
@@ -540,8 +500,9 @@
              "#if 0"))
           (invoke "python" "build/linux/unbundle/replace_gn_files.py"
                   "--system-libraries" "flac" "fontconfig" "freetype"
-                  "harfbuzz-ng" "libjpeg" "libpng" "libwebp" "libxml"
+                  "harfbuzz-ng" "icu" "libjpeg"
-                  "libxslt" "openh264" "opus" "zlib")))))
+                  "libpng" "libwebp" "libxml" "libxslt" "openh264" "opus"
+                  "zlib")))))
 
 (define opus+custom
   (package/inherit opus
@@ -570,7 +531,7 @@
                                   %chromium-version "-lite.tar.xz"))
               (sha256
                (base32
-                "1salvlw5sykx3zmsbp7cgmf7y8yy6jlgb4b4zswzsbjrprk4jnap"))
+                "09iwglswnr6d45zz3zsjw7jpm1xlwwkxlz9h5nlhqxyd933a04fq"))
               (modules '((guix build utils)))
               (snippet (force ungoogled-chromium-snippet))))
     (build-system gnu-build-system)
@@ -587,7 +548,6 @@
       ;; directory for an exhaustive list of supported flags.
       ;; (Note: The 'configure' phase will do that for you.)
       #~(list "is_debug=false"
-              "is_component_build=false"
               ;; Use the "official" release optimizations, as opposed to
               ;; a developer build.
               "is_official_build=true"
@@ -595,7 +555,6 @@
               "use_clang_modules=false"
               "use_custom_libcxx=false" ; support for this is deprecated and to be removed.
               "optimize_webui=false"
-              "webnn_use_tflite=false"
               "safe_browsing_use_unrar=false"
               "chrome_pgo_phase=0"
               "use_sysroot=false"
@@ -613,10 +572,12 @@
               "enable_service_discovery=false"
               "enable_vr=false"
               "enable_enterprise_companion=false"
+              "enable_glic=false"
               "enable_iterator_debugging=false"
               "enable_hangout_services_extension=false"
               "enable_widevine=false"
-              "fatal_linker_warnings=false"
+              ;; Disable type-checking for the Web UI to avoid a Java dependency.
+              "enable_js_type_check=false"
               ;; Disable code using TensorFlow until it has been scrutinized
               ;; by the ungoogled project.
               "build_with_tflite_lib=false"
@@ -628,11 +589,6 @@
               "angle_has_histograms=false"
               "angle_build_tests=false"
               "build_angle_perftests=false"
-              "enable_perfetto_unittests=false"
-              "skia_enable_skshapper_tests=false"
-              "tint_build_unittests=false"
-              "enable_nocompile_tests=false"
-              "enable_screen_ai_browsertests=false"
 
               "clang_warning_suppression_file=\"\""
 
@@ -641,8 +597,6 @@
               "is_cfi=false"
 
               "symbol_level=0"
-              "blink_symbol_level=0"
-              "v8_symbol_level=0"
               "v8_enable_backtrace=false"
 
               ;; Define a custom toolchain that simply looks up CC, AR and
@@ -674,10 +628,26 @@
                              ;; invokation and fails if it's just the version number.
                              " (f6e511eec 2024-10-15) (built from a source tarball)\"")
 
+              ;; Chromium's build/rust/std/BUILD.gn has a hardcoded
+              ;; list of stdlib rlibs (stdlib_files) that GN uses to
+              ;; declare build outputs.  GN requires static output
+              ;; declarations, so the list must exactly match what
+              ;; rlibs exist in the Rust sysroot.  Chromium's list
+              ;; includes unicode_width because their bundled
+              ;; toolchain (Rust 1.89) ships it as a dependency of
+              ;; getopts 0.2.23.  Our Rust 1.93 has getopts 0.2.24
+              ;; which dropped that dependency, so unicode_width is
+              ;; not in our sysroot.  This GN arg removes it from
+              ;; the list.  (Chromium's own use of unicode_width via
+              ;; codespan-reporting is a separate vendored copy under
+              ;; third_party/rust/chromium_crates_io/ and is
+              ;; unaffected.)
+              "removed_rust_stdlib_libs=[\"unicode_width\"]"
+
               ;; Prefer system libraries.
               "use_system_freetype=true"
               "use_system_harfbuzz=true"
-              "use_system_icu=false"
+              "use_system_icu=true"
               "use_system_lcms2=true"
               "use_system_libffi=true"
               "use_system_libjpeg=true"
@@ -743,9 +713,9 @@
 
                 ;; Many files try to include ICU headers from "third_party/icu/...".
                 ;; Remove the "third_party/" prefix to use system headers instead.
-                ;(substitute* (find-files "chrome" "\\.cc$")
+                (substitute* (find-files "chrome" "\\.cc$")
-                ;  (("third_party/icu/source/(common|i18n)/")
+                  (("third_party/icu/source/(common|i18n)/")
-                ;   ""))
+                   ""))
 
                 ;; XXX: Should be unnecessary when use_system_lcms2=true.
                 (substitute* "third_party/pdfium/core/fxcodec/icc/icc_transform.h"
@@ -762,19 +732,16 @@
                   (("include \"third_party/curl")
                    "include \"curl"))
 
-                ;; Our clang libs and rustfmt are not under bindgen root directory.
+                ;; Unknown flags as of clang-19, can be removed when building with
-                (substitute* '("build/rust/rust_bindgen_generator.gni"
+                ;; newer clang.
-                               "build/rust/rust_bindgen.gni")
+                (substitute* "build/config/compiler/BUILD.gn"
+                  (("-gsimple-template-names") ""))
+
+                ;; Clang libs are not under bindgen root directory.
+                (substitute* "build/rust/rust_bindgen_generator.gni"
                   (("(_libclang_path = )rust_bindgen_root" _ libclang)
-                   (string-append libclang "clang_base_path"))
+                   (string-append libclang "clang_base_path"))))))
-                  (("(_rustfmt_path = \")\\$\\{rust_bindgen_root\\}" _ rustfmt)
+          (add-after 'patch-stuff 'add-absolute-references
-                   (string-append rustfmt "${rust_sysroot_absolute}"))))))
-          (add-after 'patch-stuff 'include-pthreadpool
-            ;; FIXME: Somehow the build system cannot locate this header.
-            (lambda _
-              (copy-file "third_party/pthreadpool/src/include/pthreadpool.h"
-                         "pthreadpool.h")))
-          (add-after 'include-pthreadpool 'add-absolute-references
             (lambda* (#:key inputs #:allow-other-keys)
               (let ((cups-config (search-input-file inputs "/bin/cups-config"))
                     (libnssckbi.so (search-input-file inputs
@@ -796,22 +763,13 @@
           (add-after 'add-absolute-references 'adjust-CPLUS_INCLUDE_PATH
             ;; The libcxx include/c++/v1 directory is not exposed via
             ;; CPLUS_INCLUDE_PATH by default, causing errors like
-            ;; "fatal error: 'format' file not found".  Also clang is
+            ;; "fatal error: 'format' file not found".
-            ;; unable to find gcc's bits/c++config.h which is machine
-            ;; dependent.
             (lambda* (#:key native-inputs inputs #:allow-other-keys)
-              (let* ((libcxx-v1 (search-input-directory inputs
+              (setenv "CPLUS_INCLUDE_PATH"
-                                                        "include/c++/v1"))
+                      (string-append
-                     (target-system  #$(nix-system->gnu-triplet
+                       (search-input-directory inputs
-                                         (or (%current-target-system)
+                                               "/include/c++/v1")
-                                             (%current-system))))
+                       ":" (getenv "CPLUS_INCLUDE_PATH")))))
-                     (target-include (string-append "include/c++/"
-                                                    target-system))
-                     (gcc-bits  (search-input-directory inputs
-                                                        target-include)))
-                (setenv "CPLUS_INCLUDE_PATH"
-                        (string-append libcxx-v1 ":" gcc-bits ":"
-                         (getenv "CPLUS_INCLUDE_PATH"))))))
           (add-before 'configure 'prepare-build-environment
             (lambda* (#:key native-inputs inputs #:allow-other-keys)
               (let ((node (search-input-file (or native-inputs inputs)
@@ -997,7 +955,7 @@
            glib
            gtk+
            harfbuzz
-           icu4c-77
+           icu4c
            lcms
            libcxx
            libffi

gnu/packages/cinnamon.scm

@@ -30,6 +30,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (gnu packages)
   #:use-module (gnu packages admin)
   #:use-module (gnu packages autotools)

gnu/packages/cmake.scm

@@ -47,6 +47,7 @@
   #:use-module (guix build-system copy)
   #:use-module (guix build-system emacs)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module ((guix search-paths) #:select ($SSL_CERT_DIR $SSL_CERT_FILE))
   #:use-module (gnu packages)
   #:use-module (gnu packages backup)

gnu/packages/code.scm

@@ -49,6 +49,7 @@
   #:use-module (guix git-download)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system cmake)
+  #:use-module ((guix build-system python) #:select (pypi-uri))
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system trivial)
   #:use-module (guix build-system go)

gnu/packages/containers.scm

@@ -714,7 +714,7 @@ Its main purpose is to support the key usage by @code{docker-init}:
 (define-public podman
   (package
     (name "podman")
-    (version "5.8.2")
+    (version "5.8.1")
     (outputs '("out" "docker"))
     (properties
      `((output-synopsis "docker" "docker alias for podman")
@@ -727,7 +727,7 @@ Its main purpose is to support the key usage by @code{docker-init}:
              (url "https://github.com/containers/podman")
              (commit (string-append "v" version))))
        (sha256
-        (base32 "12bmzbfyjsf0mwnam38cw9ib54wj1znh5b7lxzdyll9cvvkhqisr"))
+        (base32 "1wdsdc0nj4m1v8mn95dhavi87ad0adqmld70da59gvp2abff5f0f"))
        (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (arguments

gnu/packages/coreboot.scm

@@ -42,24 +42,20 @@
   #:use-module (guix utils)
   #:use-module (srfi srfi-26))
 
-(define %coreboot-version "26.03")
-
-(define %coreboot-origin
-  (origin
-    (method git-fetch)
-    (uri (git-reference
-           (url "https://review.coreboot.org/coreboot")
-           (commit %coreboot-version)))
-    (file-name (git-file-name "coreboot" %coreboot-version))
-    (sha256
-     (base32
-      "0436rr0vibh35phvkxrc939njvrmnfq9xw87y1b0nlllglvq07kk"))))
-
 (define-public bincfg
   (package
     (name "bincfg")
-    (version %coreboot-version)
+    (version "25.09")
-    (source %coreboot-origin)
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://review.coreboot.org/coreboot")
+              (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "1a1n64dwr5fzdnaj45bjci85ap5yra5gwz4x056zn6481xwvbsmv"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -130,8 +126,17 @@ It also comes with example files generated by bincfg.")
 (define-public ifdtool
   (package
     (name "ifdtool")
-    (version %coreboot-version)
+    (version "25.09")
-    (source %coreboot-origin)
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://review.coreboot.org/coreboot")
+              (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "1a1n64dwr5fzdnaj45bjci85ap5yra5gwz4x056zn6481xwvbsmv"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -155,8 +160,16 @@ dump Intel Firmware Descriptor data of an image file.")
 (define-public intelmetool
   (package
     (name "intelmetool")
-    (version %coreboot-version)
+    (version "25.09")
-    (source %coreboot-origin)
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://review.coreboot.org/coreboot")
+                    (commit version)))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1a1n64dwr5fzdnaj45bjci85ap5yra5gwz4x056zn6481xwvbsmv"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -188,8 +201,17 @@ Management Engine (ME).  You need to @code{sudo rmmod mei_me} and
 (define-public nvramtool
   (package
     (name "nvramtool")
-    (version %coreboot-version)
+    (version "25.09")
-    (source %coreboot-origin)
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://review.coreboot.org/coreboot")
+              (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "1a1n64dwr5fzdnaj45bjci85ap5yra5gwz4x056zn6481xwvbsmv"))))
     (build-system gnu-build-system)
     (arguments
      (list

gnu/packages/cpp.scm

@@ -78,6 +78,7 @@
   #:use-module (guix build-system copy)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system scons)
   #:use-module (guix modules)
@@ -1903,7 +1904,8 @@ using the string similarity calculations from FuzzyWuzzy.")
           (add-after 'unpack 'fix-pytest-config
             (lambda _
               (substitute* "pyproject.toml"
-                (("\"pytest-cov\", ") "")))))))
+                ((" \"pytest-cov\", ") "")
+                ((" --cov-fail-under=90 --cov=cpplint") "")))))))
     (native-inputs
      (list python-pytest
            python-pytest-timeout

gnu/packages/crypto.scm

@@ -105,6 +105,7 @@
   #:use-module (guix build-system copy)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system perl)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix utils)
   #:use-module (srfi srfi-1)

gnu/packages/cups.scm

@@ -62,6 +62,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix download)
   #:use-module (guix git-download)

gnu/packages/cybersecurity.scm

@@ -31,6 +31,7 @@
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (gnu packages databases)
   #:use-module (gnu packages check)
   #:use-module (gnu packages cpp)

gnu/packages/databases.scm

@@ -200,6 +200,7 @@
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system ruby)
   #:use-module (guix build-system cmake)
@@ -1251,98 +1252,6 @@ management system that supports the standardized Structured Query
 Language.")
     (license license:gpl2)))
 
-(define-public mysql-connector-python
-  (package
-    (name "mysql-connector-python")
-    (version "8.3.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/mysql/mysql-connector-python")
-              (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "18jvpnnwmfrn961rvqmsygp7dw3spf3swhxhal4hhj5hqddckj5f"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      ;; tests: 1371 passed
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'compatibility
-            (lambda _
-              (substitute* "src/mysql_capi.c"
-                (("res = mysql_options\\(&self->session, MYSQL_OPT_LOAD_DATA_LOCAL_DIR.*")
-                 "res = 0;")
-                (("mysql_options\\(&self->session, MYSQL_OPT_LOAD_DATA_LOCAL_DIR.*")
-                 "")
-                (("mysql_options\\(&self->session, MYSQL_OPT_TLS_CIPHERSUITES.*")
-                 "")
-                ;; The C API does not have mysql_bind_param, so we produce an
-                ;; error here.
-                (("status = mysql_bind_param.*") "status = 1;")
-                (("#include \"mysql_capi_conversion\\.h\"" all)
-                 (string-append all "\n" "#include <stdbool.h>")))))
-          (add-after 'unpack 'chdir
-            (lambda _
-              (chdir "mysql-connector-python")))
-          (add-before 'build 'prepare-build
-            (lambda _
-              (setenv "MYSQL_CAPI" #$(this-package-input "mysql"))))
-          (replace 'check
-            (lambda* (#:key tests? #:allow-other-keys)
-              (when tests?
-                ;; Some of these tests might be failing due to the build
-                ;; container's restrictions, others are due to the version
-                ;; mismatch.
-                (substitute* "tests/cext/test_cext_api.py"
-                  (("def test_change_user") "def _do_not_test_change_user")
-                  (("def test_get_character_set_info")
-                   "def _do_not_test_get_character_set_info"))
-                (substitute* "tests/test_bugs.py"
-                  (("def test_change_user") "def _do_not_test_change_user")
-                  (("def test_lost_connection") "def _do_not_test_lost_connection")
-                  (("def test_kill_query") "def _do_not_test_kill_query")
-                  ;; These all fail because of expired certificates.
-                  (("def test_cext_verify_server_certificate")
-                   "def _do_not_test_cext_verify_server_certificate")
-                  (("def test_pure_verify_server_certificate")
-                   "def _do_not_test_pure_verify_server_certificate")
-                  (("def test_verify_server_name_cext_cnx")
-                   "def _do_not_test_verify_server_name_cext_cnx")
-                  (("def test_verify_server_name_pure_cnx")
-                   "def _do_not_test_verify_server_name_pure_cnx"))
-                (substitute* '("tests/test_connection.py"
-                               "tests/test_aio_connection.py")
-                  (("def test_allow_local_infile_in_path")
-                   "def _do_not_test_allow_local_infile_in_path")
-                  ;; This fails because of expired certificates.
-                  (("def test_connect_with_unix_socket")
-                   "def _do_not_test_connect_with_unix_socket"))
-                (substitute* "tests/test_constants.py"
-                  (("def test_deprecated")
-                   "def _do_not_test_deprecated"))
-                (mkdir-p "/tmp/datadir")
-                (invoke "python3" "unittests.py"
-                        "--verbosity=3"
-                        (string-append "--with-mysql=" #$(this-package-input "mysql"))
-                        "--keep"
-                        "--mysql-topdir=/tmp/datadir"
-                        "--unix-socket=/tmp/datadir")))))))
-    (propagated-inputs (list python-protobuf))
-    (inputs (list mysql protobuf-3.20 openssl-1.1 zlib))
-    (native-inputs (list python-setuptools))
-    (home-page "https://dev.mysql.com/doc/connector-python/en/index.html")
-    (synopsis "MySQL driver written in Python")
-    (description "MySQL Connector/Python enables Python programs to access
-MySQL databases, using an API that is compliant with the Python Database API
-Specification v2.0 (PEP 249).")
-    (license license:gpl2)))
-
-(define-deprecated-package python-mysql-connector-python
-  mysql-connector-python)
-
 (define-public mariadb
   (package
     (name "mariadb")
@@ -4744,24 +4653,33 @@ PickleShare.")
 (define-public python-apsw
   (package
     (name "python-apsw")
-    (version "3.50.4.0")
+    (version "3.46.0.0")
+    ;; The compressed release has fetching functionality disabled.
     (source
      (origin
-       (method git-fetch)
+       (method url-fetch)
-       (uri (git-reference
+       (uri (string-append
-              (url "https://github.com/rogerbinns/apsw")
+             "https://github.com/rogerbinns/apsw/releases/download/"
-              (commit version)))
+             version "/apsw-" version ".zip"))
-       (file-name (git-file-name name version))
        (sha256
-        (base32 "0r9awjgpl9cmqz5xd4zbqrpiv0rv5c36a18jkqnsfky6n6sgr424"))))
+        (base32
+         "10yfbasi4mq63g0svyl1h49ylwn9znjylq78id16dzxzk9q9ipdx"))))
     (build-system pyproject-build-system)
-    (arguments
-     (list #:test-backend #~'custom
-           #:test-flags #~(list "-m" "apsw.tests")))
     (native-inputs
-     (list python-setuptools))
+     (list unzip python-setuptools python-wheel))
-    (inputs
+    (inputs (list sqlite-next))         ;SQLite 3.45.1 required.
-     (list sqlite-next))         ;SQLite 3.45.1 required.
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'build 'build-extensions
+            (lambda _
+              (invoke "python" "setup.py" "build" "--enable-all-extensions"
+                      "--enable=load_extension")))
+          (add-after 'build 'build-test-helper
+            (lambda _
+              (invoke "gcc" "-fPIC" "-shared" "-o" "./testextension.sqlext"
+                      "-I." "-Isqlite3" "src/testextension.c"))))))
     (home-page "https://github.com/rogerbinns/apsw/")
     (synopsis "Another Python SQLite Wrapper")
     (description
@@ -5690,6 +5608,7 @@ __version_tuple__ = version_tuple = (~a)~%" version version-tuple))))))
            pkg-config
            python-cython
            python-pytest
+           python-pytest-runner
            python-setuptools-scm
            python-setuptools))
     (outputs '("out"))
@@ -6286,7 +6205,7 @@ mechanism of @code{dogpile}.")
 (define-public datasette
   (package
     (name "datasette")
-    (version "1.0a26")
+    (version "1.0a19")
     (source
      (origin
        (method git-fetch)
@@ -6295,20 +6214,23 @@ mechanism of @code{dogpile}.")
               (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1ra0yfrz9w3jx7ix3dmcsg0g8hjxkz37586g7ijmqshxpzczxfm7"))))
+        (base32 "0wb73iksrc5vg2lnq3q4vr7yhlzxwr711jfmjdndd0s77996zsfh"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-      ;; tests: 1720 passed, 9 skipped, 8 xfailed, 13 xpassed, 3 warnings, 120
-      ;; subtests passed
       #:test-flags
-      #~(list "--numprocesses" (number->string (min 8 (parallel-job-count)))
+      ;; See https://github.com/simonw/datasette/issues/2048
-              "--ignore=tests/test_black.py")
+      #~(list "-k" (string-append
+                    ;; These contain two unexpected extra items.
+                    "not test_searchable"
+                    " and not test_searchmode")
+              "--ignore=tests/test_black.py"
+              "-n" (number->string (parallel-job-count)))
       #:phases
       #~(modify-phases %standard-phases
           (add-after 'unpack 'relax-requirements
             (lambda _
-              (substitute* "pyproject.toml"
+              (substitute* "setup.py"
                 (("\"pip\",") "")))))))
     (propagated-inputs
      (list python-aiofiles
@@ -6323,6 +6245,7 @@ mechanism of @code{dogpile}.")
            python-janus
            python-jinja2
            python-mergedeep
+           python-pint
            python-pluggy
            python-pyyaml
            python-sqlite-utils
@@ -6331,9 +6254,9 @@ mechanism of @code{dogpile}.")
      (list nss-certs-for-test
            python-beautifulsoup4
            python-cogapp
-           python-multipart-form-data-conformance
            python-pytest
-           python-pytest-asyncio
+           python-pytest-asyncio-0.26
+           python-pytest-runner
            python-pytest-timeout
            python-pytest-xdist
            python-setuptools

gnu/packages/dav.scm

@@ -27,6 +27,7 @@
 (define-module (gnu packages dav)
   #:use-module (guix build-system cargo)
   #:use-module (guix build-system gnu)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix download)
   #:use-module (guix gexp)
@@ -142,6 +143,9 @@ CardDAV server with a local folder or file.")
     (build-system pyproject-build-system)
     (native-inputs
      (list python-pytest
+           python-pytest-cov
+           python-pytest-flake8
+           python-pytest-isort
            python-setuptools
            python-waitress
            python-wheel))
@@ -240,6 +244,7 @@ efficient syncing
      (list python-aioresponses
            python-pytest
            python-pytest-asyncio
+           python-pytest-cov
            python-pytest-httpserver
            python-setuptools
            python-setuptools-scm

gnu/packages/debug.scm

@@ -275,7 +275,7 @@ simple way to add custom protocol messages.")
        (file-name (git-file-name name version))))
     (build-system cmake-build-system)
     (native-inputs
-     (list flex python-pytest))
+     (list flex python-pytest python-pytest-flake8))
     (inputs
      (list bash-minimal clang llvm unifdef
            python python-pebble python-psutil python-chardet))
@@ -1213,7 +1213,7 @@ and input distributions can also be expressed in Fandango.")
                           ;; Shorten paths to sockets in tests.
                           (lambda _ (setenv "TMPDIR" "/tmp"))))
            #:test-target "test"))
-    (native-inputs (list python python-setuptools)) ; for tests
+    (native-inputs (list python))      ; for tests
     (synopsis "Fault injector in userspace")
     (description "Fiu provides CLI utilities and a C library
 to mark points of failure inside your code

gnu/packages/dictionaries.scm

@@ -41,6 +41,7 @@
   #:use-module (guix build-system copy)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system trivial)
   #:use-module (gnu packages)

gnu/packages/diffoscope.scm

@@ -67,6 +67,7 @@
   #:use-module (gnu packages vim)
   #:use-module (gnu packages web)
   #:use-module (gnu packages xml)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix gexp)
   #:use-module (guix git-download)
@@ -289,6 +290,14 @@ install.")
               (for-each (lambda (file)
                           (chmod file #o755))
                         (find-files #$output "autopkgtest-virt-.*"))))
+          ;; Adjust use of importlib.resources to use python 3.10 compatible
+          ;; syntax, which requires an argument.
+          ;; Drop when switching to python 3.12+.
+          (add-after 'unpack 'adjust-importlib-resources-for-old-python
+            (lambda _
+              (substitute* "reprotest/__init__.py"
+                (("importlib.resources.files\\(\\)")
+                  "importlib.resources.files(package='reprotest')"))))
           (add-after 'unpack 'skip-most-tests
             ;; These tests require functionality not available in the guix
             ;; build environment

gnu/packages/digest.scm

@@ -27,6 +27,7 @@
   #:use-module (guix git-download)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system trivial)
   #:use-module (guix utils)
   #:use-module (gnu packages check)

gnu/packages/disk.scm

@@ -59,6 +59,7 @@
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system scons)
   #:use-module (guix build-system trivial)

gnu/packages/django.scm

@@ -37,6 +37,7 @@
   #:use-module (guix git-download)
   #:use-module (guix gexp)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix deprecation)
   #:use-module (guix search-paths)
   #:use-module (guix utils)
@@ -328,7 +329,7 @@ to the @dfn{don't repeat yourself} (DRY) principle.")
         (base32 "1a5vd07wrnfbclvf6pz9p8ag9kdd1453lsl9q0bkyc45hq2xqd2a"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-django python-pytest python-setuptools))
+     (list python-django python-pytest python-pytest-cov python-setuptools))
     (home-page "https://github.com/epicserve/django-cache-url")
     (synopsis "Configure Django cache settings from URLs")
     (description
@@ -419,6 +420,7 @@ and adapters that are useful for non-trivial configuration scenarios.")
            python-factory-boy
            python-pygments
            python-pytest
+           python-pytest-cov ; runs by default
            python-pytest-django
            python-setuptools
            python-shortuuid
@@ -1327,6 +1329,7 @@ server headers required for Cross-Origin Resource Sharing (CORS).")
            python-mock
            python-msgpack
            python-pytest
+           python-pytest-cov
            python-pytest-django
            python-pytest-mock
            python-setuptools
@@ -2183,6 +2186,7 @@ templates and not in python-level form definitions.")
     (build-system pyproject-build-system)
     (native-inputs
      (list python-pytest
+           python-pytest-cov ; runs by default
            python-pytest-django
            python-setuptools
            python-wheel))

gnu/packages/djvu.scm

@@ -29,6 +29,7 @@
   #:use-module (guix git-download)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages base)
   #:use-module (gnu packages bash)

gnu/packages/dlang.scm

@@ -108,7 +108,9 @@
            (lambda _
              (invoke "cmake" "--install" "."))))))
     (inputs
-     `(("zlib" ,zlib)))
+     `(("libconfig" ,libconfig)
+       ("libedit" ,libedit)
+       ("zlib" ,zlib)))
     (native-inputs
      `(("lld-wrapper" ,(make-lld-wrapper lld-17 #:lld-as-ld? #t))
        ("llvm" ,llvm-17)

gnu/packages/docbook.scm

@@ -53,6 +53,7 @@
   #:use-module (guix build-system copy)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (srfi srfi-26))
 
 ;; The fetch-plan, install-plan and phases for docbook-xml tend to vary
@@ -665,8 +666,7 @@ the in DocBook SGML DTDs.")
                (base32
                 "0yd09nypswy3q4scri1dg7dr99d7gd6r2dwx0xm81l9f4y32gs0n"))
               (patches
-               (search-patches "dblatex-importlib.patch"
+               (search-patches "dblatex-inkscape-1.0.patch"))))
-                               "dblatex-inkscape-1.0.patch"))))
     (outputs '("out" "doc"))
     (build-system pyproject-build-system)
     (arguments

gnu/packages/docker.scm

@@ -39,6 +39,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system go)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix utils)
   #:use-module (gnu packages autotools)

gnu/packages/documentation.scm

@@ -41,6 +41,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system copy)
   #:use-module (guix build-system perl)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system qt)
   #:use-module (guix deprecation)
@@ -471,8 +472,9 @@ inspired by Dash.")
     (build-system gnu-build-system)
     (arguments
      (list
-      ;; Custom build steps to prevent using pyproject-build-system which
+      ;; Essentially a lighter copy of the former python-build-system.
-      ;; allows to edit the latter without a texlive + haskell world rebuild.
+      ;; Using it rather than pyproject-build-system allows to edit the latter
+      ;; without a texlive + haskell world rebuild.
       #:phases
       #~(modify-phases %standard-phases
           (delete 'bootstrap)

gnu/packages/dotnet.scm

@@ -62,6 +62,7 @@
   #:use-module (guix utils)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
+  #:use-module (guix build-system python)
   #:use-module (ice-9 match))
 
 (define-public treecc

gnu/packages/duckdb.scm

@@ -25,6 +25,7 @@
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system pyproject)
+  #:use-module ((guix build-system python) #:select (pypi-uri))
   #:use-module (guix build-system r)
   #:use-module (guix download)
   #:use-module (guix gexp)

gnu/packages/ebook.scm

@@ -40,6 +40,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (gnu packages)
   #:use-module (gnu packages autotools)

gnu/packages/education.scm

@@ -91,6 +91,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system go)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system trivial)
   #:use-module (srfi srfi-1))

gnu/packages/electronics.scm

@@ -64,6 +64,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix deprecation)
   #:use-module (guix download)
@@ -479,10 +480,8 @@ individual low-level driver modules.")
     (build-system gnu-build-system)
     (arguments
      (list
-      #:imported-modules %pyproject-build-system-modules
+      #:imported-modules (append %default-gnu-imported-modules
-      #:modules '((guix build gnu-build-system)
+                                 %python-build-system-modules)
-                  ((guix build pyproject-build-system) #:prefix py:)
-                  (guix build utils))
       #:make-flags
       #~(list (string-append "PREFIX=" #$output))
       #:phases
@@ -508,7 +507,8 @@ individual low-level driver modules.")
                 ;; https://github.com/YosysHQ/eqy/actions/runs/18767539188/job/53545383858
                 (invoke "make" "-C" "examples/spm")
                 (invoke "make" "-C" "examples/simple"))))
-          (add-after 'install 'python:wrap py:wrap))))
+          (add-after 'install 'python:wrap
+            (@@ (guix build python-build-system) wrap)))))
     (native-inputs
      (list clang python-minimal-wrapper python-sphinx texinfo yosys))
     (inputs
@@ -2072,10 +2072,7 @@ versus schematic} tests and can assist with automatic routing.")
      (list
       #:tests? #f                       ;there are no tests
       #:imported-modules (append %qt-build-system-modules
-                                 %pyproject-build-system-modules)
+                                 %python-build-system-modules)
-      #:modules '((guix build qt-build-system)
-                  ((guix build pyproject-build-system) #:prefix py:)
-                  (guix build utils))
       #:phases
       #~(modify-phases %standard-phases
           (add-after 'unpack 'build-info-documentation
@@ -2103,7 +2100,8 @@ versus schematic} tests and can assist with automatic routing.")
                   (chmod bin_ #o755)))
               (install-it "mcy")
               (install-it "mcy-dash")))
-          (add-after 'make-install 'python:wrap py:wrap))))
+          (add-after 'make-install 'python:wrap
+            (@@ (guix build python-build-system) wrap)))))
     (native-inputs
      (list pkg-config
            python-sphinx
@@ -3010,6 +3008,7 @@ Numpy arrays for convenience.")
               (setenv "PDM_BUILD_SCM_VERSION" #$version))))))
     (native-inputs
      (list python-pdm-backend
+           python-pytest-cov
            python-setuptools
            python-setuptools-scm
            sby
@@ -3322,7 +3321,9 @@ Standard} data mode.")
         (base32 "15nnydvr1a4ykh8cagi484sfgvdg0dnjxaw6c0ivhjbrbblpaqnw"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-setuptools python-setuptools-scm))
+     (list python-pytest-cov
+           python-setuptools
+           python-setuptools-scm))
     (home-page "http://pyvcd.readthedocs.io/")
     (synopsis "Library to manipulate digital wave files")
     (description
@@ -3599,7 +3600,10 @@ Automation}.")
                          #$output "/share/info/hdlmake-figures")))))
       #:test-flags #~(list "test_all.py")))
     (native-inputs
-     (list python-setuptools python-sphinx texinfo))
+     (list python-pytest-cov
+           python-setuptools
+           python-sphinx
+           texinfo))
     (propagated-inputs (list python-networkx))
     (home-page "https://ohwr.gitlab.io/project/hdl-make/")
     (synopsis "Generate multi-purpose makefiles for HDL projects")
@@ -3762,9 +3766,18 @@ design.")
       ;; Tests are expensive and may introduce race condition on systems with
       ;; high (more than 16) threads count; limit parallel jobs to 8x.
       #~(list
-         "--numprocesses" (number->string (min 8 (parallel-job-count))))))
+         "--numprocesses" (number->string (min 8 (parallel-job-count))))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'pathch-pytest-options
+            (lambda _
+              (substitute* "pyproject.toml"
+                ((".*--cov=.*") "")
+                ((".*--self-contained-html.*") "")
+                ((".*-n.*auto.*") "")))))))
     (native-inputs
-     (list python-pytest
+     (list python-pytest-cov
+           python-pytest-html
            python-pytest-xdist
            python-setuptools))
     (propagated-inputs
@@ -4233,10 +4246,11 @@ them usable as simple logic analyzer and/or oscilloscope hardware.")
      (list
       #:parallel-tests? #f
       #:test-target "test"
-      #:imported-modules %pyproject-build-system-modules
       #:modules `((guix build gnu-build-system)
-                  ((guix build pyproject-build-system) #:prefix python:)
+                  ((guix build python-build-system) #:prefix python:)
                   (guix build utils))
+      #:imported-modules `(,@%default-gnu-imported-modules
+                           (guix build python-build-system))
       #:make-flags #~(list (string-append "PREFIX=" #$output))
       #:phases
       #~(modify-phases %standard-phases

gnu/packages/emacs-xyz.scm

@@ -784,7 +784,7 @@ reading the extensive documentation about BookmarkPlus on the Emacs Wiki.")
   (package
     (name "emacs-bqn-mode")
     ;; Upstream releases are tagged by date.
-    (version "2026-02-08")
+    (version "2025-07-06")
     (source
      (origin
        (method git-fetch)
@@ -793,7 +793,7 @@ reading the extensive documentation about BookmarkPlus on the Emacs Wiki.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1m9l4if3a9i6r76v370gh6azgj2lwqcnpavfv2bkvm9ad56f3pa8"))))
+        (base32 "1b25k66nn4qa4ryhm8mzc53qvsvhgjzdngisw28cpdh109627iz3"))))
     (build-system emacs-build-system)
     (arguments
      (list #:tests? #f)) ;No tests found in source.
@@ -13826,7 +13826,7 @@ generates it as a string.  Please see the homepage for usage examples.")
       #:imported-modules (append %emacs-build-system-modules
                                  %pyproject-build-system-modules)
       #:modules '((guix build emacs-build-system)
-                  ((guix build pyproject-build-system) #:prefix py:)
+                  ((guix build python-build-system) #:prefix py:)
                   (guix build emacs-utils)
                   (guix build utils))
       #:phases
@@ -24580,13 +24580,6 @@ Meow’s motions.")
       #:tests? #f                       ; no test suite
       #:phases
       #~(modify-phases %standard-phases
-          (add-before 'patch-el-files 'patch-xauth-path
-            ;; Uses xauth directly at runtime to authenticate with the X server.
-            (lambda* (#:key inputs #:allow-other-keys)
-              (substitute* "xcb.el"
-                (("xauth list")
-                 (string-append (search-input-file inputs "/bin/xauth")
-                                " list")))))
           (add-after 'expand-load-path 'regenerate-el-files
             (lambda* (#:key inputs native-inputs #:allow-other-keys)
               (substitute* "xelb-gen"
@@ -24594,7 +24587,6 @@ Meow’s motions.")
               (invoke "make"
                       (format #f "PROTO_PATH=~a/share/xcb"
                               #$(this-package-native-input "xcb-proto"))))))))
-    (inputs (list xauth))
     (native-inputs (list xcb-proto))
     (propagated-inputs (list emacs-compat))
     (home-page "https://github.com/emacs-exwm/xelb")
@@ -35420,199 +35412,12 @@ files are easily readable and they work nicely with version control systems.")
       (build-system emacs-build-system)
       (arguments
        (list #:include #~(cons "^data\\/" %default-include)
-             #:tests? #f              ; no tests
+             #:tests? #f))              ; no tests
-             #:phases
-             #~(modify-phases %standard-phases
-                 ;; The nerd-icons-install-fonts function would otherwise
-                 ;; download fonts from the network.  Replace it with a stub
-                 ;; that instructs the user to install the font via Guix.
-                 (add-after 'unpack 'disable-font-installer
-                   (lambda _
-                     (emacs-batch-edit-file "nerd-icons.el"
-                       '(progn
-                         (search-forward "(defun nerd-icons-install-fonts")
-                         (beginning-of-line)
-                         (kill-sexp)
-                         (insert "\
-(defun nerd-icons-install-fonts (&optional pfx)
-  (interactive \"P\")
-  (message \"To use nerd-icons fonts, install `font-nerd-symbols' using
-`guix package -i font-nerd-symbols' or add it to your manifest or home config.
-Remember, that you may have to run `fc-cache -rv' to refresh the font cache.\
-\"))")
-                         (basic-save-buffer))))))))
       (synopsis "Library for easily using nerd font icons inside Emacs")
       (description "Nerd-icons an alternative to all-the-icons.  It works on both
 GUI and terminal, and requires a nerd font installed on your system.")
       (license license:gpl3+))))
 
-(define-public emacs-nerd-icons-dired
-  ;; No tags provided upstream
-  (let ((commit "adf9a2bb5f3f13be7a676923639337f3fcc5d8c3")
-        (revision "0"))
-    (package
-      (name "emacs-nerd-icons-dired")
-      (version (git-version "0.0.1" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-                (url "https://github.com/rainstormstudio/nerd-icons-dired")
-                (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "0x1xmwlfjgbk5kk4bxvgz4ykwwgiwmdbzhgsw49kpzz678a3qzrp"))))
-      (build-system emacs-build-system)
-      (arguments
-       (list
-        #:tests? #f))                   ;no tests
-      (propagated-inputs (list emacs-nerd-icons))
-      (home-page "https://github.com/rainstormstudio/nerd-icons-dired")
-      (synopsis "Icons for Dired via Nerd Icons")
-      (description
-       "This package adds icons to Dired, using the @code{nerd-icons} package.")
-      (license license:gpl3+))))
-
-(define-public emacs-nerd-icons-ivy-rich
-  ;; Tagged release is not up-to-date, according to the "Version:" keyword in
-  ;; main file.
-  (let ((commit "5006f91b49e86e232cdc1a628501b76124c41dac")
-        (revision "0"))
-    (package
-      (name "emacs-nerd-icons-ivy-rich")
-      (version (git-version "1.0.1" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-                (url "https://github.com/seagle0128/nerd-icons-ivy-rich")
-                (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "0m62l4cl9j3ssd25rz40vgrv99bmwn6l4ig2sf8zzi0fpzm8axgh"))))
-      (build-system emacs-build-system)
-      (arguments
-       (list
-        #:tests? #f))                   ;tests require Cask
-      (propagated-inputs
-       (list emacs-ivy-rich
-             emacs-nerd-icons))
-      (home-page "https://github.com/seagle0128/nerd-icons-ivy-rich")
-      (synopsis "Icons for Ivy via Nerd Icons")
-      (description
-       "This package adds icons to Ivy, using the @code{ivy-rich} and
-@code{nerd-icons} packages.")
-      (license license:gpl3+))))
-
-(define-public emacs-nerd-icons-ibuffer
-  (package
-    (name "emacs-nerd-icons-ibuffer")
-    (version "1.0.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/seagle0128/nerd-icons-ibuffer")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1wj6kcgvh700maj9i5pmgzc48lbj0dbxx849a8w519m4anr7b23s"))))
-    (build-system emacs-build-system)
-    (arguments
-     (list
-      #:tests? #f))                   ;tests require Cask
-    (propagated-inputs
-     (list emacs-nerd-icons))
-    (home-page "https://github.com/seagle0128/nerd-icons-ibuffer")
-    (synopsis "Icons for Ibuffer via Nerd Icons")
-    (description
-     "This package adds icons to ibuffer in Emacs, using the @code{nerd-icons}
-package.")
-    (license license:gpl3+)))
-
-(define-public emacs-nerd-icons-completion
-  ;; No tags provided upstream
-  (let ((commit "63a6b3f1eb98bb381c86a1658ac401c8967079b8")
-        (revision "0"))
-    (package
-      (name "emacs-nerd-icons-completion")
-      (version (git-version "0.0.1" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-                (url "https://github.com/rainstormstudio/nerd-icons-completion")
-                (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "08p361rh5mv3ng10av1381kzl9s4msdjyca96hsgsh05qwq5pdrf"))))
-      (build-system emacs-build-system)
-      (arguments
-       (list
-        #:tests? #f))                   ;no tests
-      (propagated-inputs (list emacs-nerd-icons))
-      (home-page "https://github.com/rainstormstudio/nerd-icons-completion")
-      (synopsis "Icons for Emacs minibuffer completion via Nerd Icons")
-      (description
-       "This package adds icons to minibuffer completion in Emacs, using the
-@code{nerd-icons} package.  It supports @code{vertico} and @code{marginalia}.")
-      (license license:gpl3+))))
-
-(define-public emacs-nerd-icons-corfu
-  (package
-    (name "emacs-nerd-icons-corfu")
-    (version "1.0.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/LuigiPiucco/nerd-icons-corfu")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "036p45wqwrqhn5xv5sn3gsm2mb79gj6fk24zpkfa7wrv45qqgb21"))))
-    (build-system emacs-build-system)
-    (arguments
-     (list
-      #:tests? #f))                   ;no tests
-    (propagated-inputs
-     (list emacs-corfu
-           emacs-nerd-icons))
-    (home-page "https://github.com/LuigiPiucco/nerd-icons-corfu")
-    (synopsis "Icons for Corfu via Nerd Icons")
-    (description
-     "This package adds icons to @code{corfu}, using the @code{nerd-icons}
-package.")
-    (license license:gpl3+)))
-
-(define-public emacs-nerd-icons-mode-line
-  ;; No tags provided upstream
-  (let ((commit "23eca8e16799524889d661f4140355e81b8f929c")
-        (revision "0"))
-    (package
-      (name "emacs-nerd-icons-mode-line")
-      (version (git-version "0.0.1" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-                (url "https://github.com/grolongo/nerd-icons-mode-line")
-                (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "0l2bg22cllab9wz5wxd6zhrywavqrlvv1a6y49ij63qhlsfncy6s"))))
-      (build-system emacs-build-system)
-      (arguments
-       (list
-        #:tests? #f))                   ;no tests
-      (propagated-inputs (list emacs-nerd-icons))
-      (home-page "https://github.com/grolongo/nerd-icons-mode-line")
-      (synopsis "Icons for the Emacs modeline via Nerd Icons")
-      (description
-       "This package adds icons to the modeline in Emacs, using the
-@code{nerd-icons} package.")
-      (license license:gpl3+))))
-
 (define-public emacs-all-the-icons
   ;; The latest release was on 3 June 2021.
   (let ((commit "4778632b29c8c8d2b7cd9ce69535d0be01d846f9")

gnu/packages/embedded.scm

@@ -45,6 +45,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system trivial)
   #:use-module ((guix build utils) #:select (alist-replace delete-file-recursively))
   #:use-module (gnu packages)
@@ -2032,7 +2033,13 @@ whereas kdmx creates pseudo-ttys.")
       ;; tests: 631 passed, 27 skipped, 1 warning
       #:test-flags
       ;; E   ModuleNotFoundError: No module named 'mbed_tools_ci_scripts'
-      #~(list "--ignore=tests/ci_scripts/test_sync_board_db.py")))
+      #~(list "--ignore=tests/ci_scripts/test_sync_board_db.py")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-pytest-config
+            (lambda _
+              (substitute* "pytest.ini"
+                (("addopts = .*") "")))))))
     (native-inputs
      (list python-factory-boy
            python-pytest

gnu/packages/emulators.scm

@@ -140,6 +140,7 @@
   #:use-module (guix build-system glib-or-gtk)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system trivial))

gnu/packages/enchant.scm

@@ -41,6 +41,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix licenses)
   #:use-module (srfi srfi-1))
 

gnu/packages/engineering.scm

@@ -77,6 +77,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix download)
   #:use-module (guix gexp)
@@ -1827,6 +1828,7 @@ it suitable for security research and analysis.")
     (native-inputs (list python-gitpython
                          python-pytest
                          python-pytest-asyncio
+                         python-pytest-cov
                          python-pytest-mock
                          python-setuptools))
     (inputs (list bash-minimal
@@ -2365,6 +2367,7 @@ Newton-Raphson power flow solvers in the C++ library lightsim2grid, and the
                          python-networkx
                          python-openpyxl
                          python-pytest
+                         python-pytest-cov ; --cov runs by default on skrf
                          python-pytest-mock
                          python-pyvisa
                          python-setuptools
@@ -2898,22 +2901,20 @@ interpolation toolkit.")
 (define-public python-motulator
   (package
     (name "python-motulator")
-    (version "0.6.2")
+    (version "0.5.0")
     (source
      (origin
-       (method git-fetch)
+       (method url-fetch)
-       (uri (git-reference
+       (uri (pypi-uri "motulator" version))
-              (url "https://github.com/Aalto-Electric-Drives/motulator/")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
        (sha256
-        (base32 "1di2r1i19jl751v0hj426zkwk48w5yf8zpw2bl6qzk0vq4z2vpbw"))))
+        (base32 "1kh13zfa4w73q04pny2w2zgym47fp8xy7glwfx82fdx4fihk7dv7"))))
     (build-system pyproject-build-system)
     (arguments
      (list #:tests? #f)) ; there are no tests
-    (propagated-inputs
+    (propagated-inputs (list python-matplotlib python-numpy python-scipy))
-     (list python-numpy python-matplotlib python-scipy python-tqdm))
+    (native-inputs (list python-hatchling
-    (native-inputs (list python-hatchling))
+                         python-ipykernel
+                         python-toml))
     (home-page "https://aalto-electric-drives.github.io/motulator/")
     (synopsis "Motor Drive Simulator in Python")
     (description "This package includes simulation models for an induction

gnu/packages/enlightenment.scm

@@ -30,6 +30,7 @@
   #:use-module (guix gexp)
   #:use-module (guix utils)
   #:use-module (guix build-system meson)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (gnu packages)
   #:use-module (gnu packages algebra)

gnu/packages/fediverse.scm

@@ -29,6 +29,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix utils)
   #:use-module (gnu packages)
@@ -244,6 +245,7 @@ seamlessly with your desktop environment.")
     (native-inputs
      (list nss-certs-for-test
            python-pytest
+           python-pytest-cov
            python-pytest-mock
            python-pytest-recording
            python-pytest-retry

gnu/packages/file-systems.scm

@@ -50,6 +50,7 @@
   #:use-module (guix build-system go)
   #:use-module (guix build-system linux-module)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system trivial)
   #:use-module (guix utils)

gnu/packages/finance.scm

@@ -70,6 +70,7 @@
   #:use-module (guix build-system copy)
   #:use-module (guix build-system emacs)
   #:use-module (guix build-system haskell)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system glib-or-gtk)
   #:use-module (guix build-system go)
@@ -1622,7 +1623,10 @@ features:
        (sha256
         (base32 "0yir8hka3vmpk0qhiaffagkdjg3mjgai808s0razsggbd5cn80bb"))))
     (build-system pyproject-build-system)
-    (native-inputs (list python-pytest python-setuptools))
+    (native-inputs
+     (list python-pytest
+           python-pytest-cov
+           python-setuptools))
     (home-page "https://arthurdejong.org/python-stdnum/")
     (synopsis "Python module to handle standardized number and code formats")
     (description
@@ -2505,6 +2509,10 @@ analysis of financial market data.")
         (base32 "13g5338aa8vgkx8g94vz5d8ynfq3jndvyh1nz6dlhw4axwr4x8dp"))))
     (properties '(("upstream-name" #{.}# "mt-940")))
     (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      #~(list "-c" "/dev/null")))       ; Remove custom --cov flags.
     (native-inputs (list python-pytest python-pyyaml python-setuptools))
     (home-page "https://mt940.readthedocs.io/")
     (synopsis "Python parser for MT940-encoded SWIFT data")

gnu/packages/firmware.scm

@@ -47,6 +47,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system trivial)
   #:use-module (gnu packages)

gnu/packages/flashing-tools.scm

@@ -49,6 +49,7 @@
   #:use-module (guix build-system go)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix download)
   #:use-module (guix gexp)

gnu/packages/fontutils.scm

@@ -96,6 +96,7 @@
   #:use-module (guix build-system go)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix utils)
   #:use-module (srfi srfi-1))
 
@@ -472,53 +473,6 @@ font design software, it allows you to join, split, offset, and perform many
 other operations on paths.")
     (license license:expat)))
 
-(define-public python-booleanoperations
-  (package
-    (name "python-booleanoperations")
-    (version "0.9.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/typemytype/booleanOperations")
-              (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0ahfgamyq1ndwbr9n8sdx8qhqc2195xnbahylgjpk877hbr2gxav"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      ;; Some tests fail due to small differences in the expected result (see:
-      ;; <https://github.com/typemytype/booleanOperations/issues/69>).
-      #:test-flags
-      #~(list "-k"
-              (string-join
-               (list "not test_QTail_reversed_difference"
-                     "test_QTail_reversed_intersection"
-                     "test_QTail_reversed_union"
-                     "test_QTail_reversed_xor"
-                     "test_Q_difference"
-                     "test_Q_intersection"
-                     "test_Q_union"
-                     "test_Q_xor")
-               " and not "))))
-    (native-inputs
-     (list python-defcon-bootstrap
-           python-fontpens-bootstrap
-           python-pytest
-           python-setuptools
-           python-setuptools-scm))
-    (propagated-inputs
-     (list python-fonttools-minimal
-           python-pyclipper))
-    (home-page "https://github.com/typemytype/booleanOperations")
-    (synopsis "Boolean operations on paths")
-    (description
-     "Boolean operations on paths which uses a super fast
-@url{http://www.angusj.com/delphi/clipper.php, polygon clipper library by
-Angus Johnson}.")
-    (license license:expat)))
-
 (define-public python-cffsubr
   (package
     (name "python-cffsubr")
@@ -620,6 +574,7 @@ for fontTools.")
      (list python-cython
            python-defcon
            python-pytest
+           python-pytest-runner
            python-setuptools
            python-setuptools-scm
            python-wheel
@@ -746,7 +701,8 @@ implementing the pen protocol for manipulating glyphs.")
       (modify-inputs native-inputs
         (append python-fontparts-bootstrap
                 python-fontpens-bootstrap
-                python-pytest))))))
+                python-pytest
+                python-pytest-runner))))))
 
 ;;; A variant used to break a cycle with python-fontpens.
 (define-public python-fontparts-bootstrap
@@ -1027,6 +983,7 @@ suite of the @code{psautohint} package.")
     (native-inputs
      (list psautohint-font-data
            python-pytest
+           python-pytest-cov
            python-pytest-xdist
            python-setuptools-scm
            python-setuptools
@@ -1870,10 +1827,6 @@ definitions.")
            pango
            potrace
            python
-           ;; XXX: Python 3.12 lacks distutils:
-           ;; ModuleNotFoundError: No module named 'distutils'
-           ;; Remove when package is updated.
-           python-setuptools-bootstrap
            zlib))
     (arguments
      (append

gnu/packages/freedesktop.scm

@@ -73,6 +73,7 @@
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system glib-or-gtk)
   #:use-module (guix build-system qt)
   #:use-module (guix search-paths)
@@ -1377,43 +1378,41 @@ For information about libevdev, see:
     (license license:expat)))
 
 (define-public python-pyxdg
-  ;; Latest unreleased commits add Python 3.12, 3.14 and 3.15 support.
+  (package
-  (let ((commit "63033ac306aa26d32e1439417e59ae8f8a4c9820")
+    (name "python-pyxdg")
-        (revision "0"))
+    (version "0.28")
-    (package
+    (source
-      (name "python-pyxdg")
+     (origin
-      (version "0.28")
+       (method url-fetch)
-      (source
+       (uri (pypi-uri "pyxdg" version))
-       (origin
+       (sha256
-         (method git-fetch)
+        (base32
-         (uri (git-reference
+         "1d48bqwkbnpid80cpwz6h62i112laxl0ivpj58hdyd79fhqbnrrj"))))
-                (url "https://gitlab.freedesktop.org/xdg/pyxdg")
+    (build-system pyproject-build-system)
-                (commit commit)))
+    (arguments
-         (file-name (git-file-name name version))
+     (list
-         (sha256
+      #:test-flags
-          (base32
+      ;; Tests failing with error: AssertionError: 'image' != 'inode'
-           "10wk95rmcr2fglmvmv1a6ad9hkw9587r0rlww0gq6kbfz85whgmd"))))
+      #~(list "--deselect=test/test_mime.py::MimeTest::test_get_type"
-      (build-system pyproject-build-system)
+              "--deselect=test/test_mime.py::MimeTest::test_get_type2")
-      (arguments
+      #:phases
-       (list
+      #~(modify-phases %standard-phases
-        #:phases
+          (add-before 'check 'pre-check
-        #~(modify-phases %standard-phases
+            (lambda _
-            (add-before 'check 'pre-check
+              (setenv "XDG_DATA_DIRS"
-              (lambda _
+                      (string-append #$(this-package-native-input "shared-mime-info")
-                (setenv "XDG_DATA_DIRS"
+                                     "/share/")))))))
-                        (string-append #$(this-package-native-input "shared-mime-info")
+    (native-inputs
-                                       "/share/")))))))
+     (list shared-mime-info
-      (native-inputs
+           hicolor-icon-theme
-       (list shared-mime-info
+           python-pytest
-             hicolor-icon-theme
+           python-setuptools))
-             python-pytest
+    (home-page "https://www.freedesktop.org/wiki/Software/pyxdg")
-             python-setuptools))
+    (synopsis "Implementations of freedesktop.org standards in Python")
-      (home-page "https://www.freedesktop.org/wiki/Software/pyxdg")
+    (description
-      (synopsis "Implementations of freedesktop.org standards in Python")
+     "PyXDG is a collection of implementations of freedesktop.org standards in
-      (description
-       "PyXDG is a collection of implementations of freedesktop.org standards in
 Python.")
-      (license license:lgpl2.0))))
+    (license license:lgpl2.0)))
 
 (define-public hyprland-protocols
   (package
@@ -2178,7 +2177,7 @@ which speak the Qualcomm MSM Interface (QMI) protocol.")
            libxslt                      ;for xsltproc
            pkg-config
            python-minimal
-           python-dbus                  ;for test
+           python-dbus-1.2              ;for test
            python-pygobject             ;for test
            vala))
     (propagated-inputs
@@ -2372,7 +2371,7 @@ different sorts of messages in different formats.")
           (base32 "02wb61h2k3hhis5y2xi5rhc6pmikd13x722hk620sqb9b3m5pn3s"))))
       (build-system gnu-build-system)
       (native-inputs (list autoconf automake libtool pkg-config))
-      (inputs (list libxslt python-wrapper python-dbus))
+      (inputs (list libxslt python-wrapper python-dbus-1.2))
       (propagated-inputs (list telepathy-glib))
       (home-page "https://telepathy.freedesktop.org/")
       (synopsis "Telepathy IRC connection manager")

gnu/packages/game-development.scm

@@ -70,6 +70,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system go)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system renpy)
   #:use-module (guix build-system scons)
   #:use-module (gnu packages)

gnu/packages/games.scm

@@ -5521,7 +5521,7 @@ falling, themeable graphics and sounds, and replays.")
     (name "wesnoth")
     ;; Even-numbered minor versions indicate stable versions:
     ;; https://wiki.wesnoth.org/ReleasingWesnoth#Version_numbering
-    (version "1.18.7")
+    (version "1.18.6")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -5530,7 +5530,7 @@ falling, themeable graphics and sounds, and replays.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0hdrp4xm9d8kj8id2g5q0wwdwykx4a0f1cs8a7fghmv0czryfv7f"))))
+                "0cdlczxczqgzdaqwydb9gfgi7d9jc39li72p2rb5nk1rlgfff79s"))))
     (build-system cmake-build-system)
     (arguments
      (list #:tests? #f                  ;no test target
@@ -6749,7 +6749,7 @@ in-window at 640x480 resolution or fullscreen.")
 (define-public warzone2100
   (package
     (name "warzone2100")
-    (version "4.6.3")
+    (version "4.6.1")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://sourceforge/warzone2100/releases/"
@@ -6765,7 +6765,7 @@ in-window at 640x480 resolution or fullscreen.")
                                  "inih" "re2" "utf8proc" "utfcpp")))))
               (sha256
                 (base32
-                  "0fmiy0pm56yy69c0nhynjdiaslwlfg8cdvfl5s78g5pzdi1y47s3"))))
+                  "02x5ihkpfkpjxwvh00d8yqzd796af7d684nk96hzhhq28qw5bb16"))))
     (build-system cmake-build-system)
     (arguments (list #:configure-flags #~'("-GNinja"
                                            "-DWZ_DISTRIBUTOR=Guix"
@@ -6802,7 +6802,7 @@ in-window at 640x480 resolution or fullscreen.")
                   opusfile
                   physfs
                   re2
-                  sdl3
+                  sdl2
                   sqlite
                   utf8proc
                   utfcpp
@@ -13508,8 +13508,8 @@ rules to solve permissions issues.")
 
 (define-public steam-devices-udev-rules
   ;; Last release from 2019-04-10
-  (let ((commit "7dde9ecb3c386363ecd9bd0a3b77e4756d200704")
+  (let ((commit "13443480a64fe8f10676606bd57da6de89f8ccb1")
-        (revision "2"))
+        (revision "1"))
     (package
       (name "steam-devices-udev-rules")
       (version (git-version "1.0.0.61" revision commit))
@@ -13521,7 +13521,7 @@ rules to solve permissions issues.")
                 (file-name (git-file-name name version))
                 (sha256
                  (base32
-                  "0w0xkgi9fpvdbpl57f8fy2nwy2icm6iag39b8ifpkijlxgclx1p3"))))
+                  "0i086gmnk93q76sw1laa9br6b7zj2r6nrrw7d64y4q9wcrlxw2bi"))))
       (build-system copy-build-system)
       (arguments
        '(#:install-plan '(("./" "lib/udev/rules.d"

gnu/packages/geo.scm

@@ -55,6 +55,7 @@
   #:use-module (guix build-system go)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system r)
   #:use-module (guix build-system zig)
@@ -297,7 +298,7 @@ than 600 operators available.")
 (define-public h3
   (package
     (name "h3")
-    (version "4.4.1")
+    (version "4.1.0")
     (source
      (origin
        (method git-fetch)
@@ -306,7 +307,7 @@ than 600 operators available.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1ijnbr4a54ph7bkn8waqwgnxmxlylv9yly9mwjdj69lkmdfjgaml"))))
+        (base32 "0x764xzna8ka6yhgv2y4hb158a61y3g9a6835qckqp7wfkpqvb7f"))))
     (build-system cmake-build-system)
     (arguments
      (list #:configure-flags #~(list "-DBUILD_SHARED_LIBS=ON")))
@@ -318,25 +319,48 @@ combining the benefits of a hexagonal grid with S2's hierarchical
 subdivisions.")
     (license license:asl2.0)))
 
-(define-public python-h3
+;; For python-timezonefinder, remove it when it starts supporting newer
+;; version.
+(define-public h3-3
   (package
-    (name "python-h3")
+    (inherit h3)
-    (version "4.4.2")
+    (name "h3")
+    (version "3.7.2")
     (source
      (origin
        (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/uber/h3")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0bvsljfxmjvl23v9gxykc4aynjzh5xfy3wg02bxad7cknr1amx9j"))))))
+
+(define-public python-h3
+  (package
+    (name "python-h3")
+    (version "4.0.0b2")
+    (source
+     (origin
+       (method git-fetch) ; no tests data in PyPi package
        (uri (git-reference
              (url "https://github.com/uber/h3-py")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "02gry51hn8x2bl80y1ipcyrg0ghcif4vjch26qil215wdzz1yrzv"))
+        (base32 "1k1n256hhlh05gjcj64pqh08zlaz6962jkb6nk1aazsgg8p41zs0"))
        (modules '((guix build utils)))
        ;; Remove bundled H3 lib.
        (snippet #~(begin (delete-file-recursively "src/h3lib")))))
     (build-system pyproject-build-system)
     (arguments
      (list
+      ;; FIXME: Check why these tests are failing.
+      ;; test_versions - assert (4, 1) == (4, 0)
+      ;; test_resolution - h3._cy.error_system.H3Failed
+      #:test-flags #~(list "-k" (string-append
+                                 "not test_versions"
+                                 " and not test_resolution"))
       #:phases
       #~(modify-phases %standard-phases
           ;; Use packaged in Guix h3 source.
@@ -357,7 +381,10 @@ subdivisions.")
            python-cython
            python-numpy
            python-pytest
-           python-scikit-build-core))
+           python-scikit-build
+           python-setuptools
+           python-setuptools-scm
+           python-wheel))
     (inputs (list h3))
     (home-page "https://uber.github.io/h3-py")
     (synopsis "Python bindings for H3")
@@ -365,6 +392,26 @@ subdivisions.")
 hierarchical hexagonal geospatial indexing system")
     (license license:asl2.0)))
 
+;; For python-timezonefinder, remove it when it starts supporting newer
+;; version.
+(define-public python-h3-3
+  (package
+    (inherit python-h3)
+    (name "python-h3")
+    (version "3.7.6")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/uber/h3-py")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "16gxa1sivghxw179rik87r918mjasars2qkzidlwq83qfa4axn20"))))
+    (inputs
+     (modify-inputs inputs
+       (replace "h3" h3-3)))))
+
 (define-public geos
   (package
     (name "geos")
@@ -1012,6 +1059,7 @@ for seismology.")
     (inputs (list gdal))
     (native-inputs (list python-cython
                          python-pytest
+                         python-pytest-cov
                          python-setuptools
                          python-tomli
                          python-versioneer
@@ -1111,7 +1159,7 @@ projections and coordinate transformations library.")
 (define-public python-fiona
   (package
     (name "python-fiona")
-    (version "1.10.1")
+    (version "1.9.6")
     (source
      (origin
        (method git-fetch)
@@ -1120,38 +1168,24 @@ projections and coordinate transformations library.")
               (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0xribbcy5wvrm5y3bq281dry86vhjcnphg9772yp9s3y30y7mlz4"))))
+        (base32 "08whhjrspp194qasjhr9kf70fl342ms47k78rwpcf5q6ikf0rfii"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-      ;; tests: 757 passed, 161 skipped, 24 deselected, 1 xfailed, 6 xpassed
       #:test-flags
       #~(list "-m" "not network and not wheel"
-              #$@(map (lambda (test) (string-append "--deselect=tests/" test))
+              ;; FIXME: Find why the
-                      ;; UserWarning: The parameter --where is used more than
+              ;; test_no_append_driver_cannot_append[PCIDSK] test is failing.
-                      ;; once. Remove its duplicate as parameters should be
+              "-k" "not test_no_append_driver_cannot_append")
-                      ;; unique.
-                      (list "test_fio_cat.py::test_bbox_json_yes"
-                            "test_fio_cat.py::test_bbox_no"
-                            "test_fio_cat.py::test_bbox_where"
-                            "test_fio_cat.py::test_bbox_yes"
-                            "test_fio_cat.py::test_bbox_yes_two_files"
-                            "test_fio_cat.py::test_dst_crs_epsg3857"
-                            "test_fio_cat.py::test_multi_layer"
-                            "test_fio_cat.py::test_one"
-                            "test_fio_cat.py::test_two"
-                            "test_fio_cat.py::test_vfs"
-                            "test_fio_cat.py::test_where_no"
-                            "test_fio_cat.py::test_where_yes"
-                            "test_fio_cat.py::test_where_yes_two_files"
-                            ;; FileNotFoundError:
-                            ;; https://github.com/Toblerity/Fiona/files/\
-                            ;; 11151652/coutwildrnp.zip
-                            "test_pyopener.py::test_opener_fsspec_zip_http_fs")))
       #:phases
       #~(modify-phases %standard-phases
-          (add-before 'check 'remove-local-source
+          (add-before 'build 'set-configure-flags
             (lambda _
+              (setenv "CFLAGS" "-Wno-error=incompatible-pointer-types")))
+          (add-before 'check 'remove-local-fiona
+            (lambda _
+              ;; This would otherwise interfere with finding the installed
+              ;; fiona when running tests.
               (delete-file-recursively "fiona"))))))
     (inputs
      (list gdal))
@@ -1159,19 +1193,19 @@ projections and coordinate transformations library.")
      (list python-attrs
            python-certifi
            python-click
-           python-click-plugins
+           python-click-plugins-1
            python-cligj))
     (native-inputs
      (list gdal ; for gdal-config
            python-boto3
            python-cython
-           python-fsspec
            python-pytest
+           python-pytest-cov
            python-pytz
-           python-setuptools
+           python-setuptools))
-           python-shapely))
     (home-page "https://github.com/Toblerity/Fiona")
-    (synopsis "Fiona reads and writes spatial data files")
+    (synopsis
+     "Fiona reads and writes spatial data files")
     (description
      "Fiona is GDAL’s neat and nimble vector API for Python programmers. Fiona
 is designed to be simple and dependable.  It focuses on reading and writing
@@ -1431,6 +1465,7 @@ street bearings/orientations, and speed/travel time.")
            python-pyproj
            python-pyyaml
            python-pytest
+           python-pytest-cov
            python-pytest-httpserver
            python-pytz
            python-requests
@@ -1762,7 +1797,10 @@ utilities for data translation and processing.")
       ;; This test requires internet access.
       '(list "--deselect" "test_shapefile.py::test_reader_url")))
     (native-inputs
-     (list python-pytest python-setuptools python-wheel))
+     (list python-pytest
+           python-pytest-runner
+           python-setuptools
+           python-wheel))
     (home-page "https://github.com/GeospatialPython/pyshp")
     (synopsis "Read/write support for ESRI Shapefile format")
     (description
@@ -2898,7 +2936,7 @@ to the OSM opening hours specification.")
 (define-public josm
   (package
     (name "josm")
-    (version "19555")
+    (version "19539")
     (source (origin
               (method svn-fetch)
               (uri (svn-reference
@@ -2907,7 +2945,7 @@ to the OSM opening hours specification.")
                      (recursive? #f)))
               (sha256
                (base32
-                "0kpshdj8kf9ag7h1qqrh9jqc6c9iv8v369mk60a8g7cbzf0xpblw"))
+                "05kslpvdwl4fldjzl6m2kmqvbmjv5yvipfavg01l30ywhw2c7v7v"))
               (file-name (string-append name "-" version "-checkout"))
               (modules '((guix build utils)))
             (snippet
@@ -3492,9 +3530,10 @@ orienteering sport.")
        (list
         #:tests? #f                    ; No tests
         #:modules `((guix build gnu-build-system)
-                    ((guix build pyproject-build-system) #:prefix python:)
+                    ((guix build python-build-system) #:prefix python:)
                     (guix build utils))
-        #:imported-modules %pyproject-build-system-modules
+        #:imported-modules `(,@%default-gnu-imported-modules
+                             (guix build python-build-system))
         #:configure-flags
         #~(list "--with-blas"
                 "--with-bzlib"
@@ -3666,13 +3705,13 @@ growing set of geoscientific methods.")
     (build-system cmake-build-system)
     (arguments
      (list
-      #:imported-modules (append %cmake-build-system-modules
-                                 %pyproject-build-system-modules
-                                 '((guix build qt-utils)))
       #:modules '((guix build cmake-build-system)
-                  ((guix build pyproject-build-system) #:prefix py:)
+                  ((guix build python-build-system) #:prefix python:)
                   (guix build qt-utils)
                   (guix build utils))
+      #:imported-modules `(,@%cmake-build-system-modules
+                           (guix build python-build-system)
+                           (guix build qt-utils))
       #:configure-flags
       #~(list "-DWITH_QTWEBKIT=NO")
       #:phases
@@ -3833,10 +3872,11 @@ growing set of geoscientific methods.")
             ;; Configure correct path to PyQt5 SIP directory
             (add-after 'unpack 'configure-pyqt5-sip-path
               (lambda* (#:key inputs #:allow-other-keys)
-                (let* ((pyqt (assoc-ref inputs "python-pyqt+qscintilla"))
+                (let ((sip-dir (string-append
-                       (sip-dir (string-append
+                                (assoc-ref inputs "python-pyqt+qscintilla")
-                                 (py:site-packages inputs `(("out" . ,pyqt)))
+                                "/lib/python"
-                                 "/PyQt5/bindings")))
+                                (python:python-version (assoc-ref inputs "python"))
+                                "/site-packages/PyQt5/bindings")))
                   (substitute* "cmake/FindPyQt5.py"
                     (("sip_dir = cfg.default_sip_dir")
                      (string-append "sip_dir = \"" sip-dir "\"")))
@@ -3866,7 +3906,7 @@ SET\\(PYQT5_SIP_DIR \"\\$\\{Python_SITEARCH\\}/PyQt5/bindings\"\\)")
                               "-E" (string-join ignored-tests "|")))
                     (format #t "test suite not run~%"))))
             (add-after 'install 'wrap-python
-              (assoc-ref py:%standard-phases 'wrap))
+              (assoc-ref python:%standard-phases 'wrap))
             (add-after 'wrap-python 'wrap-qt
               (lambda* (#:key inputs #:allow-other-keys)
                 (wrap-qt-program "qgis" #:output #$output #:inputs inputs)))

gnu/packages/gimp.scm

@@ -476,31 +476,17 @@ inverse fourier transform.")
   (package
     (name "libmypaint")
     (version "1.6.1")
-    (source
+    (source (origin
-     (origin
+              (method url-fetch)
-       (method git-fetch)
+              (uri (string-append "https://github.com/mypaint/libmypaint/"
-       (uri (git-reference
+                                  "releases/download/v" version "/libmypaint-"
-              (url "https://github.com/mypaint/libmypaint")
+                                  version ".tar.xz"))
-              (commit (string-append "v" version))))
+              (sha256
-       (file-name (git-file-name name version))
+               (base32
-       (sha256
+                "0priwpmc7dizccqvn21ig6d649bprl3xl1hmjj7nddznjgr585vl"))))
-        (base32 "1ppgpmnhph9h8ayx9776f79a0bxbdszfw9c6bw7c3ffy2yk40178"))))
     (build-system gnu-build-system)
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-before 'bootstrap 'overwrite-automake-and-aclocal-versions
-            (lambda _
-              (setenv "AUTOMAKE" "automake")
-              (setenv "ACLOCAL" "aclocal"))))))
     (native-inputs
-     (list autoconf
+     (list intltool pkg-config))
-           automake
-           intltool
-           libtool
-           pkg-config
-           python))
     ;; As needed by 'libmypaint.pc'.
     (propagated-inputs
      (list json-c gobject-introspection))
@@ -512,26 +498,6 @@ brushstrokes which is used by MyPaint and GIMP.")
     (home-page "http://mypaint.org")
     (license license:isc)))
 
-;; To update mypaint, remove when a fresh version is released.
-(define-public libmypaint-next
-  (package
-    (inherit libmypaint)
-    (name "libmypaint")
-    (properties '((commit . "551dfb9ca5d2b82f2361a5a8a9e7f386f35fd320")
-                  (revision . "0")))
-    (version (git-version "1.6.1"
-                          (assoc-ref properties 'revision)
-                          (assoc-ref properties 'commit)))
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/mypaint/libmypaint")
-              (commit (assoc-ref properties 'commit))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0pl8cma6gfkrqx364fs1xw7f491f7y6pzxqjq1cdqlrf9r8gg0sk"))))))
-
 (define-public mypaint-brushes
   (package
     (name "mypaint-brushes")

gnu/packages/gkrellm.scm

@@ -19,12 +19,10 @@
 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
 
 (define-module (gnu packages gkrellm)
-  #:use-module (guix build-system gnu)
-  #:use-module (guix download)
-  #:use-module (guix gexp)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
-  #:use-module (guix utils)
+  #:use-module (guix download)
+  #:use-module (guix build-system gnu)
   #:use-module (gnu packages gettext)
   #:use-module (gnu packages gtk)
   #:use-module (gnu packages pkg-config)
@@ -33,27 +31,32 @@
 (define-public gkrellm
   (package
     (name "gkrellm")
-    (version "2.5.1")
+    (version "2.3.11")
     (source
      (origin
-       (method url-fetch)
+      (method url-fetch)
-       (uri (string-append "https://gkrellm.srcbox.net/releases/gkrellm-"
+      (uri (string-append "http://gkrellm.srcbox.net/releases/gkrellm-"
-                           version ".tar.bz2"))
+                          version ".tar.bz2"))
-       (sha256
+      (sha256
-        (base32 "0qvy2xmwmfy5f0g09yn9lr262shnx82ba04r5il2wj4qscg3r7h8"))))
+       (base32 "01lccz4fga40isv09j8rjgr0qy10rff9vj042n6gi6gdv4z69q0y"))))
     (build-system gnu-build-system)
-    (inputs (list gtk+-2 libsm))
+    (inputs
-    (native-inputs (list gettext-minimal pkg-config))
+     `(("gettext" ,gettext-minimal)
+       ("gtk+" ,gtk+-2)
+       ("libice" ,libice)
+       ("libsm" ,libsm)))
+    (native-inputs
+     (list pkg-config))
     (arguments
-     (list
+     `(#:tests? #f                      ; there is no check target
-      #:tests? #f ;there is no check target
+       #:phases
-      #:phases
+       (modify-phases %standard-phases
-      #~(modify-phases %standard-phases
+         (delete 'configure))           ; no configure script
-          (delete 'configure)) ;no configure script
+       #:make-flags
-      #:make-flags
+       (let ((out (assoc-ref %outputs "out")))
-      #~(list (string-append "INSTALLROOT=" #$output)
+         (list (string-append "INSTALLROOT=" out)
-              (string-append "CC=" #$(cc-for-target)))))
+               "CC=gcc"))))
-    (home-page "https://gkrellm.srcbox.net/")
+    (home-page "http://gkrellm.srcbox.net/")
     (synopsis "System monitors")
     (description
      "GKrellM is a single process stack of system monitors which supports

gnu/packages/gl.scm

@@ -79,6 +79,7 @@
   #:use-module (guix build-system cargo)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system meson)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
@@ -1419,8 +1420,8 @@ original glmark benchmark by Ben Smith.")
     (license license:bsd-2)))
 
 (define-public piglit
-  (let ((revision "2")
+  (let ((revision "1")
-        (commit "040ed91f234abb6a502d3a6910f1b0e54bd239a7"))
+        (commit "814046fe6942eac660ee4a6cc5fcc54011a49945"))
     (package
      (name "piglit")
      (version (git-version "0.0.0" revision commit))
@@ -1431,7 +1432,7 @@ original glmark benchmark by Ben Smith.")
                     (commit commit)))
               (file-name (git-file-name name version))
               (sha256
-               (base32 "1j5dmkym1mmz410xgwygimnjk2aswsqmcpjwz4s98pgmymh1yjvf"))))
+               (base32 "1bzaalcxskckfnwprw77sbbmfqi59by2j8imaq8ghnlzhlxv7mk7"))))
      (build-system cmake-build-system)
      (arguments
       (list #:configure-flags #~(list "-DPIGLIT_SSE2=OFF")
@@ -1450,21 +1451,16 @@ original glmark benchmark by Ben Smith.")
                                       "'")))))
                 (add-after 'install 'wrap
                   (lambda* (#:key outputs #:allow-other-keys)
-                    (wrap-script (string-append #$output "/bin/piglit")
+                    (wrap-script (string-append (assoc-ref outputs "out")
+                                                "/bin/piglit")
                       `("GUIX_PYTHONPATH" prefix
                         (,(getenv "GUIX_PYTHONPATH")))))))))
-     (inputs (list glslang
+     (inputs (list guile-3.0            ; for wrap-script
-                   guile-3.0            ; for wrap-script
                    libxkbcommon
-                   python
+                   python python-lxml python-mako python-numpy-1
-                   wayland-protocols
+                   glslang vulkan-headers vulkan-loader
-                   vulkan-headers
-                   vulkan-loader
                    waffle))
-     (native-inputs (list pkg-config
+     (native-inputs (list pkg-config))
-                          python-lxml
-                          python-mako
-                          python-numpy))
      (home-page "https://piglit.freedesktop.org/")
      (synopsis "Test OpenGL implementations")
      (description "Piglit is a collection of automated tests for OpenGL and

gnu/packages/gnome-xyz.scm

@@ -51,6 +51,7 @@
   #:use-module (guix build-system copy)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix gexp)
   #:use-module (guix git-download)
   #:use-module (guix packages)

gnu/packages/gnome.scm

@@ -250,6 +250,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system trivial)
   #:use-module ((guix config) #:select (%storedir))
   #:use-module (guix deprecation)
@@ -2597,92 +2598,6 @@ of Evince is to replace the multiple document viewers that exist
 on the GNOME Desktop with a single simple application.")
     (license license:gpl2+)))
 
-(define-public papers
-  (package
-    (name "papers")
-    (version "50.0")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append "mirror://gnome/sources/papers/"
-                                  (version-major version) "/"
-                                  "papers-" version ".tar.xz"))
-              (sha256
-               (base32 "01dws72fb19i9jwp3r0khr7ym2ns51fifdzafb5dcr5w8vmj06rh"))))
-    (build-system meson-build-system)
-    (arguments
-     (list
-      #:glib-or-gtk? #t
-      #:configure-flags
-      #~(list (string-append "-Dc_link_args=-Wl,-rpath=" #$output "/lib"))
-      #:imported-modules `(,@%meson-build-system-modules
-                           ,@%cargo-build-system-modules)
-      #:modules `(((guix build cargo-build-system) #:prefix cargo:)
-                  (guix build meson-build-system)
-                  (guix build utils))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'prepare-for-build
-            (lambda _
-              (substitute* "meson.build"
-                (("gtk_update_icon_cache: true")
-                 "gtk_update_icon_cache: false")
-                (("update_desktop_database: true")
-                 "update_desktop_database: false"))
-              (substitute* "meson.build"
-                (("'Cargo.lock',")
-                  ""))
-              (delete-file "Cargo.lock")))
-          (add-after 'configure 'prepare-cargo-build-system
-            (lambda args
-              (for-each
-               (lambda (phase)
-                 (format #t "Running cargo phase: ~a~%" phase)
-                 (apply (assoc-ref cargo:%standard-phases phase)
-                        #:vendor-dir "vendor"
-                        #:cargo-target #$(cargo-triplet)
-                        args))
-               '(unpack-rust-crates
-                 configure
-                 check-for-pregenerated-files
-                 patch-cargo-checksums))
-
-              (setenv "RUSTFLAGS"
-                      (string-append (or (getenv "RUSTFLAGS") "")
-                                     " -C link-arg=-Wl,-rpath,"
-                                     #$output "/lib")))))))
-    (native-inputs
-     (cons* blueprint-compiler
-            gettext-minimal
-            `(,glib "bin")
-            gobject-introspection
-            gi-docgen
-            itstool
-            pkg-config
-            rust
-            `(,rust "cargo")
-            (or (and=> (%current-target-system)
-                       (compose list make-rust-sysroot))
-                '())))
-    (inputs
-     (cons* appstream
-            djvulibre
-            exempi
-            gtk
-            libadwaita
-            libarchive
-            libspelling
-            libtiff
-            nautilus                    ; for nautilus extension
-            poppler-next
-            zlib
-            (cargo-inputs 'papers)))
-    (home-page "https://apps.gnome.org/Papers")
-    ;; TODO: drop “new” when updating to GNOME 49 or newer.
-    (synopsis "GNOME's new document viewer")
-    (description "Papers is a document viewer capable of displaying multiple
-and single page document formats like PDF and DejaVu.")
-    (license license:gpl2+)))
-
 (define-public gsettings-desktop-schemas
   (package
     (name "gsettings-desktop-schemas")
@@ -2758,7 +2673,7 @@ schemas for settings shared by various components of the GNOME desktop.")
                 (invoke "./run-tests")))))))
     (native-inputs (list python-pytest python-setuptools xorg-server-for-tests))
     (inputs (list gtk+))
-    (propagated-inputs (list python-pygobject-3.50))
+    (propagated-inputs (list python-pygobject))
     (home-page "https://getting-things-gnome.github.io/liblarch")
     (synopsis "Library to easily handle complex data structures")
     (description
@@ -2817,7 +2732,7 @@ and how they are displayed (View).")
            gtksourceview-4
            pango
            python
-           python-dbus
+           python-dbus-1.2
            python-liblarch
            python-lxml
            python-pycairo
@@ -2985,7 +2900,7 @@ guidelines.")
            python
            cups
            gtk+
-           python-dbus
+           python-dbus-1.2
            python-pygobject
            python-pycups
            python-requests
@@ -4999,7 +4914,6 @@ as OpenStreetMap, OpenCycleMap, OpenAerialMap and Maps.")
     (arguments
      (list
       #:configure-flags #~(list "-Ddocs=disabled")
-      #:parallel-tests? #f              ;hsts-db-test might hang otherwise.
       #:phases
       #~(modify-phases %standard-phases
           (add-after 'unpack 'adjust-tests
@@ -5041,7 +4955,7 @@ as OpenStreetMap, OpenCycleMap, OpenAerialMap and Maps.")
            zlib))
     (inputs
      (list samba/pinned))               ; For ntlm_auth support
-    (home-page "https://libsoup.gnome.org")
+    (home-page "https://wiki.gnome.org/Projects/libsoup")
     (synopsis "GLib-based HTTP Library")
     (description
      "LibSoup is an HTTP client/server library for GNOME.  It uses GObjects
@@ -5157,7 +5071,7 @@ and the GLib main loop, to integrate well with GNOME applications.")
            libxslt
            pkg-config
            python
-           python-dbus
+           python-dbus-1.2
            python-pygobject-3.50
            vala))
     (propagated-inputs
@@ -8158,6 +8072,12 @@ to display dialog boxes from the commandline and shell scripts.")
     (build-system meson-build-system)
     (arguments
      (list
+      #:modules '((guix build meson-build-system)
+                  ((guix build python-build-system) #:prefix python:)
+                  (guix build utils)
+                  (ice-9 match))
+      #:imported-modules `(,@%meson-build-system-modules
+                           (guix build python-build-system))
       #:glib-or-gtk? #t
       #:configure-flags
       #~(list
@@ -8680,7 +8600,7 @@ users.")
            libxslt
            perl
            pkg-config
-           python-dbus
+           python-dbus-1.2
            python-pygobject-3.50
            python-wrapper
            vala))
@@ -12331,6 +12251,7 @@ advanced image management tool")
            intltool
            pkg-config
            python-psutil
+           python-pytest-runner
            python-pytest))
     (inputs
      (list bash-minimal ;for wrap-program
@@ -12339,7 +12260,7 @@ advanced image management tool")
            gsettings-desktop-schemas
            gtk+
            python-wrapper
-           python-dbus
+           python-dbus-1.2
            python-notify2
            python-pycairo
            python-pygobject

gnu/packages/gnunet.scm

@@ -165,14 +165,14 @@ tool to extract metadata from a file and print the results.")
 (define-public libmicrohttpd
   (package
    (name "libmicrohttpd")
-   (version "1.0.3")
+   (version "1.0.2")
    (source (origin
             (method url-fetch)
             (uri (string-append "mirror://gnu/libmicrohttpd/libmicrohttpd-"
                                 version ".tar.gz"))
             (sha256
              (base32
-              "0shj6kk4xp3k45vv696bzgx4s2jzpvhp11syck1zb70rmrxba5kq"))))
+              "1ix843yqhcl8d5gh5652pw2scx4p5n836ca80ymms5rl136lycnz"))))
    (build-system gnu-build-system)
    (arguments
     (list #:configure-flags

gnu/packages/gnupg.scm

@@ -86,6 +86,7 @@
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix download)
   #:use-module (guix gexp)

gnu/packages/gnustep.scm

@@ -48,34 +48,6 @@
   #:use-module (gnu packages xml)
   #:use-module (ice-9 match))
 
-(define-public fsviewer
-  (package
-    (name "fsviewer")
-    (version "0.2.7")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/roblillack/fsviewer")
-              (commit (string-append "v" version))))
-       (sha256
-        (base32
-         "067fvbq7b4lbnn1flmwf8lm0vq4n6qz5yz6hhab30l4gksfk51cg"))
-       (file-name (git-file-name name version))))
-    (build-system cmake-build-system)
-    (arguments (list #:tests? #f))      ;no tests
-    (inputs
-     (list windowmaker libxmu libxpm))
-    (native-inputs
-     (list pkg-config))
-    (home-page "https://github.com/roblillack/fsviewer")
-    (synopsis "File viewer for Window Maker")
-    (description "FSViewer is a NeXT FileViewer lookalike for Window
-Maker supporting browser mode and list mode.  This version is a fork of
-FSViewer.app originally written by George Clernon (1998-99) and later
-maintained by Guido Scholz (2002-07).")
-    (license license:gpl2)))
-
 (define-public gnustep-make
   (package
     (name "gnustep-make")

gnu/packages/gnuzilla.scm

@@ -605,9 +605,9 @@ in the case of Firefox, it is browser/locales/all-locales."
     "zh-TW"))
 
 ;;; Please keep these versions in sync with icedove.
-(define %icecat-base-version "140.9.1")
+(define %icecat-base-version "140.9.0")
 (define %icecat-version (string-append %icecat-base-version "-gnu1"))
-(define %icecat-build-id "20260414000000") ;must be of the form YYYYMMDDhhmmss
+(define %icecat-build-id "20260324000000") ;must be of the form YYYYMMDDhhmmss
 
 ;; 'icecat-source' is a "computed" origin that generates an IceCat tarball
 ;; from the corresponding upstream Firefox ESR tarball, using the 'makeicecat'
@@ -627,9 +627,9 @@ in the case of Firefox, it is browser/locales/all-locales."
                   "firefox-" upstream-firefox-version ".source.tar.xz"))
             (sha256
              (base32
-              "1hld2kbzvrmr7pqq0r5hw639xl8kw29lm2hsbn0m4kxang1fdlj5"))))
+              "0b79x61w51fjf12p5sr9pipg4b3fjdnbsg0j20fdai3jq6jb4wmr"))))
 
-         (gnuzilla-commit "f3595923458a5255f61a3853bd83bb5f004dc3bc")
+         (gnuzilla-commit "10a8be3fcf725ed01ffb7279ec27c2fba55dd2d2")
          (gnuzilla-source
           (origin
             (method git-fetch)
@@ -640,7 +640,7 @@ in the case of Firefox, it is browser/locales/all-locales."
                                       (string-take gnuzilla-commit 8)))
             (sha256
              (base32
-              "03kc08cvmdv3sxihf5hfhw2k91mg1y6f46b3x47p7q98phgk03cv"))))
+              "076s3zpq0cj24a2pjarb57k1xv9z45xazps8rgypzw8yc4pxi9rj"))))
 
          ;; 'search-patch' returns either a valid file name or #f, so wrap it
          ;; in 'assume-valid-file-name' to avoid 'local-file' warnings.
@@ -1249,13 +1249,13 @@ testing.")
        (cpe-name . "firefox_esr")
        (cpe-version . ,(first (string-split version #\-)))))))
 
-(define %icedove-build-id "20260403000000") ;must be of the form YYYYMMDDhhmmss
+(define %icedove-build-id "20260324000000") ;must be of the form YYYYMMDDhhmmss
 ;;; See <https://product-details.mozilla.org/1.0/thunderbird_versions.json>
 ;;; for the source of truth regarding Thunderbird releases.
 ;;; Please keep these version numbers in sync with icecat.
 ;;; Please also update thunderbird-comm-source and thunderbird-comm-l10n to
 ;;; the icedove version.
-(define %icedove-version "140.9.1")
+(define %icedove-version "140.9.0")
 
 ;; Provides the "comm" folder which is inserted into the icecat source.
 ;; Avoids the duplication of Icecat's source tarball.  Pick the changeset that
@@ -1267,11 +1267,11 @@ testing.")
     (method hg-fetch)
     (uri (hg-reference
           (url "https://hg.mozilla.org/releases/comm-esr140")
-          (changeset "427d792f23672fc4adbe9436ce7dddbb2bfb287a")))
+          (changeset "8be9f2d3072c225a1e5f153745a18984c2babf8f")))
     (file-name (string-append "thunderbird-" %icedove-version "-checkout"))
     (sha256
      (base32
-      "09fj375a0zb5kgvw94f13997zhcj67a4g5ylpdbjzfql0chh572p"))
+      "04j35957x03m5x7mhh8zxa86mwjy0is2vb614sr4inkvvz4rs2hg"))
     (patches (search-patches "icedove-observer-fix.patch"))))
 
 ;;; To regenerate, see the `format-locales' helper defined above.

gnu/packages/golang-web.scm

@@ -49,7 +49,6 @@
 ;;; Copyright © 2025 Jared Klingenberger <jkling@noreply.codeberg.org>
 ;;; Copyright © 2026 Carlos Durán Domínguez <wurt@wurt.eu>
 ;;; Copyright © 2026 Arun Isaac <arunisaac@systemreboot.net>
-;;; Copyright © 2026 Evgeny Pisemsky <mail@pisemsky.site>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -387,7 +386,6 @@ devices.")
             ;; - cloud.google.com/go/kms
             ;; - cloud.google.com/go/longrunning
             ;; - cloud.google.com/go/monitoring
-            ;; - cloud.google.com/go/security
             ;; - cloud.google.com/go/storage
             (for-each delete-file-recursively
                       (list "auth"
@@ -396,7 +394,6 @@ devices.")
                             "kms"
                             "longrunning"
                             "monitoring"
-                            "security"
                             "storage"))))))
     (build-system go-build-system)
     (arguments
@@ -786,51 +783,6 @@ its service definition.")
      "This package provides a Go Client Library for Cloud Monitoring API.")
     (license license:asl2.0)))
 
-(define-public go-cloud-google-com-go-security
-  (package
-    (name "go-cloud-google-com-go-security")
-    (version "1.21.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/googleapis/google-cloud-go")
-              (commit (go-version->git-ref version #:subdir "security"))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1pn77lf1d22sqpkia9zccdhdihlqc48lls6y9npc2wrp4lman2kv"))
-       (modules '((guix build utils)
-                  (ice-9 ftw)
-                  (srfi srfi-26)))
-       (snippet #~(begin
-                    (define (delete-all-but directory . preserve)
-                      (with-directory-excursion directory
-                        (let* ((pred (negate (cut member <>
-                                                  (cons* "." ".." preserve))))
-                               (items (scandir "." pred)))
-                          (for-each (cut delete-file-recursively <>) items))))
-                    (delete-all-but "." "security")))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:skip-build? #t
-      #:import-path "cloud.google.com/go/security"
-      #:unpack-path "cloud.google.com/go"))
-    (propagated-inputs
-     (list go-cloud-google-com-go-iam
-           go-cloud-google-com-go-longrunning
-           go-github-com-googleapis-gax-go-v2
-           go-google-golang-org-api
-           go-google-golang-org-genproto
-           go-google-golang-org-genproto-googleapis-api
-           go-google-golang-org-grpc
-           go-google-golang-org-protobuf))
-    (home-page "https://cloud.google.com/go")
-    (synopsis "Google Cloud Certificate Authority API")
-    (description
-     "This package provides a Go Client Library for Certificate Authority API.")
-    (license license:asl2.0)))
-
 (define-public go-cloud-google-com-go-storage
   (package
     (name "go-cloud-google-com-go-storage")
@@ -10262,54 +10214,6 @@ Call}.")
     (propagated-inputs
      (list go-golang-org-x-net))))
 
-(define-public go-github-com-jellydator-ttlcache-v3
-  (package
-    (name "go-github-com-jellydator-ttlcache-v3")
-    (version "3.4.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/jellydator/ttlcache")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0c7k99d0km5vplfikb58j2wbriy3mzzrrfrc0d85x50km0y4g4ln"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:import-path "github.com/jellydator/ttlcache/v3"
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'remove-examples-and-benchmarks
-            (lambda* (#:key tests? import-path #:allow-other-keys)
-              (with-directory-excursion (string-append "src/" import-path)
-                (delete-file-recursively "bench")
-                (delete-file-recursively "examples")))))))
-    (native-inputs
-     (list go-github-com-stretchr-testify
-           go-go-uber-org-goleak))
-    (propagated-inputs
-     (list go-golang-org-x-sync))
-    (home-page "https://github.com/jellydator/ttlcache")
-    (synopsis "In-memory cache with item expiration and generics")
-    (description
-     "TTLCache is an in-memory cache with item expiration and generics which
-provides the following features:
-
-@itemize
-@item simple API
-@item type parameters
-@item item expiration and automatic deletion
-@item automatic expiration time extension on each Get call
-@item loader interface that may be used to load/lazily initialize missing
-citem items
-@item thread safety
-@item event handlers (insertion, update, and eviction)
-@item metrics
-@end itemize")
-    (license license:expat)))
-
 (define-public go-github-com-jeremija-gosubmit
   (package
     (name "go-github-com-jeremija-gosubmit")
@@ -10611,33 +10515,6 @@ jsoniter and variable type declarations (if any).  jsoniter interfaces gives
 https://github.com/flynn/noise crypto protocols.")
     (license license:expat)))
 
-(define-public go-github-com-juju-ratelimit
-  (package
-    (name "go-github-com-juju-ratelimit")
-    (version "1.0.2")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/juju/ratelimit")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1qbjcm4y53awkqmpxb1nm9c1xdylc44vph4mn30qjb5wrcqy7c1r"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:import-path "github.com/juju/ratelimit"))
-    (native-inputs
-     (list go-gopkg-in-check-v1))
-    (home-page "https://github.com/juju/ratelimit")
-    (synopsis "Efficient token bucket implementation")
-    (description
-     "The ratelimit package provides an efficient
-@url{http://en.wikipedia.org/wiki/Token_bucket, token bucket} implementation
-that can be used to limit the rate of arbitrary things.")
-    (license license:lgpl3)))
-
 (define-public go-github-com-julienschmidt-httprouter
   (package
     (name "go-github-com-julienschmidt-httprouter")
@@ -16098,512 +15975,6 @@ support.")
 kinds of referrer URLs (search, social, ...).")
     (license license:expat)))
 
-(define-public go-github-com-sigstore-rekor
-  (package
-    (name "go-github-com-sigstore-rekor")
-    (version "1.4.3")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/sigstore/rekor")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1g2xma0fzy7a4nv7bj04pj9vqg4hbbz3j3jxkir0sxql5ragj36d"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:skip-build? #t
-      #:import-path "github.com/sigstore/rekor"
-      ;; XXX: Remove when all inputs are packaged.
-      #:test-subdirs
-      #~(list "pkg/events/newentry"
-              "pkg/indexstorage/mysql"
-              "pkg/pki/minisign"
-              "pkg/pki/pgp"
-              "pkg/pki/ssh"
-              "pkg/pki/tuf"
-              "pkg/pki/x509"
-              "pkg/pubsub/gcp"
-              "pkg/util")))
-    (native-inputs
-     (list go-github-com-asaskevich-govalidator
-           go-github-com-data-dog-go-sqlmock
-           go-github-com-golang-mock
-           go-github-com-google-go-cmp
-           go-github-com-spf13-cobra
-           go-github-com-spf13-pflag
-           go-github-com-spf13-viper
-           go-github-com-stretchr-testify
-           go-go-uber-org-goleak
-           go-sigs-k8s-io-release-utils))
-    (propagated-inputs
-     (list go-cloud-google-com-go-iam
-           go-github-com-asaskevich-govalidator
-           go-github-com-blang-semver
-           go-github-com-cyberphone-json-canonicalization
-           go-github-com-go-chi-chi-v5
-           go-github-com-go-openapi-errors
-           go-github-com-go-openapi-loads
-           go-github-com-go-openapi-runtime
-           go-github-com-go-openapi-spec
-           go-github-com-go-openapi-strfmt
-           go-github-com-go-openapi-swag
-           go-github-com-go-openapi-swag-conv
-           go-github-com-go-openapi-validate
-           go-github-com-go-sql-driver-mysql
-           go-github-com-go-viper-mapstructure-v2
-           go-github-com-google-trillian
-           go-github-com-grpc-ecosystem-go-grpc-middleware
-           go-github-com-hashicorp-go-cleanhttp
-           go-github-com-hashicorp-go-retryablehttp
-           go-github-com-in-toto-in-toto-golang
-           go-github-com-jedisct1-go-minisign
-           go-github-com-jmoiron-sqlx
-           go-github-com-prometheus-client-golang
-           go-github-com-redis-go-redis-v9
-           go-github-com-rs-cors
-           go-github-com-secure-systems-lab-go-securesystemslib
-           go-github-com-sigstore-protobuf-specs
-           go-github-com-sigstore-sigstore
-           go-github-com-sigstore-sigstore-pkg-signature-kms-aws
-           go-github-com-sigstore-sigstore-pkg-signature-kms-azure
-           go-github-com-sigstore-sigstore-pkg-signature-kms-gcp
-           go-github-com-sigstore-sigstore-pkg-signature-kms-hashivault
-           go-github-com-theupdateframework-go-tuf
-           go-github-com-tink-crypto-tink-go-awskms-v2
-           go-github-com-tink-crypto-tink-go-gcpkms-v2
-           go-github-com-tink-crypto-tink-go-v2
-           go-github-com-transparency-dev-merkle
-           go-github-com-veraison-go-cose
-           go-go-uber-org-zap
-           go-golang-org-x-crypto
-           go-golang-org-x-mod
-           go-golang-org-x-net
-           go-golang-org-x-sync
-           go-google-golang-org-api
-           go-google-golang-org-genproto-googleapis-rpc
-           go-google-golang-org-grpc
-           go-google-golang-org-protobuf
-           go-gopkg-in-ini-v1
-           go-gopkg-in-yaml-v2
-           go-sigs-k8s-io-yaml
-
-           ;; TODO: Complete packaging.
-           ;; go-cloud-google-com-go-profiler
-           ;; go-cloud-google-com-go-pubsub
-           ;; go-cloud-google-com-go-pubsub-v2
-           ;; go-github-com-adamkorcz-go-fuzz-headers-1
-           ;; go-github-com-cavaliercoder-go-rpm
-           ;; go-github-com-go-redis-redismock-v9
-           ;; go-github-com-google-rpmpack
-           ;; go-github-com-sassoftware-relic
-           ;; go-github-com-sassoftware-relic-v7
-           ;; go-go-step-sm-crypto
-           #;go-gocloud-dev))
-    (home-page "https://github.com/sigstore/rekor")
-    (synopsis "Sigstore transparency log")
-    (description
-     "Rekor provides an immutable tamper-resistant ledger of metadata generated
-within a software project's supply chain.  It enables software maintainers
-and consumers to transparently record signed metadata to a ledger.")
-    (license license:asl2.0)))
-
-(define-public go-github-com-sigstore-rekor-tiles-v2
-  (package
-    (name "go-github-com-sigstore-rekor-tiles-v2")
-    (version "2.0.1")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/sigstore/rekor-tiles")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0z9is3mf31abzwappwp05z1pzci6f25z1ax27qgghmdisxmd3c6k"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:skip-build? #t
-      #:import-path "github.com/sigstore/rekor-tiles/v2"
-      ;; XXX: Remove when all inputs are packaged.
-      #:test-subdirs
-      #~(list "internal/algorithmregistry"
-              "internal/safeint"
-              "pkg/client/write"
-              "pkg/types/dsse"
-              "pkg/types/hashedrekord"
-              "pkg/types/verifier"
-              "pkg/verifier/certificate"
-              "pkg/verifier/publickey"
-              "pkg/verify")))
-    (native-inputs
-     (list go-github-com-go-test-deep
-           go-github-com-spf13-cobra
-           go-github-com-spf13-viper
-           go-github-com-stretchr-testify
-           go-sigs-k8s-io-release-utils))
-    (propagated-inputs
-     (list go-cloud-google-com-go-storage
-           go-github-com-aws-aws-sdk-go-v2
-           go-github-com-aws-aws-sdk-go-v2-config
-           go-github-com-aws-aws-sdk-go-v2-credentials
-           go-github-com-aws-aws-sdk-go-v2-service-s3
-           go-github-com-aws-smithy-go
-           go-github-com-cyberphone-json-canonicalization
-           go-github-com-grpc-ecosystem-go-grpc-middleware
-           go-github-com-grpc-ecosystem-go-grpc-middleware-providers-prometheus
-           go-github-com-grpc-ecosystem-go-grpc-middleware-v2
-           go-github-com-grpc-ecosystem-grpc-gateway-v2
-           go-github-com-prometheus-client-golang
-           go-github-com-secure-systems-lab-go-securesystemslib
-           go-github-com-sigstore-protobuf-specs
-           go-github-com-sigstore-sigstore
-           ;; go-github-com-sigstore-sigstore-go                 ;cycles
-           go-github-com-sigstore-sigstore-pkg-signature-kms-aws
-           go-github-com-sigstore-sigstore-pkg-signature-kms-gcp
-           go-github-com-tink-crypto-tink-go-awskms-v2
-           go-github-com-tink-crypto-tink-go-gcpkms-v2
-           go-github-com-tink-crypto-tink-go-v2
-           go-github-com-transparency-dev-formats
-           go-github-com-transparency-dev-merkle
-           go-go-opentelemetry-io-otel
-           go-go-opentelemetry-io-otel-exporters-prometheus
-           go-go-opentelemetry-io-otel-sdk-metric
-           go-golang-org-x-exp
-           go-golang-org-x-mod
-           go-golang-org-x-sync
-           go-google-golang-org-api
-           go-google-golang-org-genproto-googleapis-api
-           go-google-golang-org-grpc
-           go-google-golang-org-protobuf
-           go-k8s-io-klog-v2
-
-           ;; TODO: Complete packaging.
-           ;; go-cloud-google-com-go-spanner
-           ;; go-github-com-chainguard-dev-clog
-           ;; go-github-com-transparency-dev-tessera
-           #;go-go-step-sm-crypto))
-    (home-page "https://github.com/sigstore/rekor-tiles")
-    (synopsis "Tile-based transparency log for Sigstore")
-    (description
-     "This package provides a tile-based implementation of a transparency log
-for the Sigstore ecosystem, supporting efficient verification of log entries.")
-    (license license:asl2.0)))
-
-(define-public go-github-com-sigstore-sigstore-go
-  (package
-    (name "go-github-com-sigstore-sigstore-go")
-    (version "1.1.4")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/sigstore/sigstore-go")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0jr8jj4wibzxawn3dzv1j4cxmbh2b5g356mh2bqq9d0p78idf7k3"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:skip-build? #t
-      #:import-path "github.com/sigstore/sigstore-go"
-      #:embed-files #~(list ".*\\.json")
-      #:test-subdirs
-      #~(list "pkg/bundle"
-              "pkg/fulcio/certificate"
-              "pkg/tlog"
-              "pkg/tuf")))
-    (native-inputs
-     (list go-github-com-stretchr-testify))
-    (propagated-inputs
-     (list go-github-com-cyberphone-json-canonicalization
-           go-github-com-digitorus-timestamp
-           go-github-com-go-openapi-runtime
-           go-github-com-go-openapi-strfmt
-           go-github-com-go-openapi-swag-conv
-           go-github-com-google-certificate-transparency-go
-           go-github-com-in-toto-attestation
-           go-github-com-in-toto-in-toto-golang
-           go-github-com-secure-systems-lab-go-securesystemslib
-           go-github-com-sigstore-protobuf-specs
-           go-github-com-sigstore-rekor
-           go-github-com-sigstore-rekor-tiles-v2
-           go-github-com-sigstore-sigstore
-           go-github-com-sigstore-timestamp-authority-v2
-           go-github-com-theupdateframework-go-tuf-v2
-           go-golang-org-x-crypto
-           go-golang-org-x-mod
-           go-google-golang-org-protobuf))
-    (home-page "https://github.com/sigstore/sigstore-go")
-    (synopsis "Go client library for Sigstore")
-    (description
-     "This package provides a Go client library for Sigstore, enabling
-verification of signatures and attestations produced by Sigstore tools.")
-    (license license:asl2.0)))
-
-(define-public go-github-com-sigstore-sigstore-pkg-signature-kms-aws
-  (package
-    (name "go-github-com-sigstore-sigstore-pkg-signature-kms-aws")
-    (version "1.10.5")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/sigstore/sigstore")
-              (commit (go-version->git-ref version
-                                           #:subdir
-                                           "pkg/signature/kms/aws"))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0shnvcgz4g7v65biwraahjrbsmr13qmb903al50giak2694qhyyk"))
-       (modules '((guix build utils)
-                  (ice-9 ftw)
-                  (srfi srfi-26)))
-       (snippet
-        #~(begin
-            (define (delete-all-but directory . preserve)
-              (with-directory-excursion directory
-                (let* ((pred (negate (cut member <>
-                                          (cons* "." ".." preserve))))
-                       (items (scandir "." pred)))
-                  (for-each (cut delete-file-recursively <>) items))))
-            (delete-all-but "." "pkg")
-            (delete-all-but "pkg" "signature")
-            (delete-all-but "pkg/signature" "kms")
-            (delete-all-but "pkg/signature/kms" "aws")))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:import-path "github.com/sigstore/sigstore/pkg/signature/kms/aws"
-      #:unpack-path "github.com/sigstore/sigstore"))
-    (native-inputs
-     (list go-github-com-stretchr-testify))
-    (propagated-inputs
-     (list go-github-com-aws-aws-sdk-go-v2
-           go-github-com-aws-aws-sdk-go-v2-config
-           go-github-com-aws-aws-sdk-go-v2-service-kms
-           go-github-com-jellydator-ttlcache-v3
-           go-github-com-sigstore-sigstore))
-    (home-page "https://github.com/sigstore/sigstore")
-    (synopsis "Utilities related to AWS KMS")
-    (description
-     "Package aws implement the interface with Amazon AWS KMS service.")
-    (license license:asl2.0)))
-
-(define-public go-github-com-sigstore-sigstore-pkg-signature-kms-azure
-  (package
-    (name "go-github-com-sigstore-sigstore-pkg-signature-kms-azure")
-    (version "1.10.5")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/sigstore/sigstore")
-              (commit (go-version->git-ref version
-                                           #:subdir
-                                           "pkg/signature/kms/azure"))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0shnvcgz4g7v65biwraahjrbsmr13qmb903al50giak2694qhyyk"))
-       (modules '((guix build utils)
-                  (ice-9 ftw)
-                  (srfi srfi-26)))
-       (snippet
-        #~(begin
-            (define (delete-all-but directory . preserve)
-              (with-directory-excursion directory
-                (let* ((pred (negate (cut member <>
-                                          (cons* "." ".." preserve))))
-                       (items (scandir "." pred)))
-                  (for-each (cut delete-file-recursively <>) items))))
-            (delete-all-but "." "pkg")
-            (delete-all-but "pkg" "signature")
-            (delete-all-but "pkg/signature" "kms")
-            (delete-all-but "pkg/signature/kms" "azure")))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:import-path "github.com/sigstore/sigstore/pkg/signature/kms/azure"
-      #:unpack-path "github.com/sigstore/sigstore"))
-    (propagated-inputs
-     (list go-github-com-azure-azure-sdk-for-go-sdk-azcore
-           go-github-com-azure-azure-sdk-for-go-sdk-azidentity
-           go-github-com-azure-azure-sdk-for-go-sdk-security-keyvault-azkeys
-           go-github-com-go-jose-go-jose-v4
-           go-github-com-google-go-cmp
-           go-github-com-jellydator-ttlcache-v3
-           go-github-com-sigstore-sigstore
-           go-golang-org-x-crypto))
-    (home-page "https://github.com/sigstore/sigstore")
-    (synopsis "Utilities related to Microsoft Azure KMS")
-    (description
-     "Package azure implement the interface with Microsoft Azure KMS
-service.")
-    (license license:asl2.0)))
-
-(define-public go-github-com-sigstore-sigstore-pkg-signature-kms-gcp
-  (package
-    (name "go-github-com-sigstore-sigstore-pkg-signature-kms-gcp")
-    (version "1.10.5")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/sigstore/sigstore")
-              (commit (go-version->git-ref version
-                                           #:subdir
-                                           "pkg/signature/kms/gcp"))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0shnvcgz4g7v65biwraahjrbsmr13qmb903al50giak2694qhyyk"))
-       (modules '((guix build utils)
-                  (ice-9 ftw)
-                  (srfi srfi-26)))
-       (snippet
-        #~(begin
-            (define (delete-all-but directory . preserve)
-              (with-directory-excursion directory
-                (let* ((pred (negate (cut member <>
-                                          (cons* "." ".." preserve))))
-                       (items (scandir "." pred)))
-                  (for-each (cut delete-file-recursively <>) items))))
-            (delete-all-but "." "pkg")
-            (delete-all-but "pkg" "signature")
-            (delete-all-but "pkg/signature" "kms")
-            (delete-all-but "pkg/signature/kms" "gcp")))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:import-path "github.com/sigstore/sigstore/pkg/signature/kms/gcp"
-      #:unpack-path "github.com/sigstore/sigstore"))
-    (propagated-inputs
-     (list go-cloud-google-com-go-kms
-           go-github-com-jellydator-ttlcache-v3
-           go-github-com-sigstore-sigstore
-           go-golang-org-x-oauth2
-           go-google-golang-org-api
-           go-google-golang-org-protobuf))
-    (home-page "https://github.com/sigstore/sigstore")
-    (synopsis "Utilities related to Google Cloud Platform KMS")
-    (description
-     "Package gcp implement the interface with Google Cloud KMS service.")
-    (license license:asl2.0)))
-
-(define-public go-github-com-sigstore-sigstore-pkg-signature-kms-hashivault
-  (package
-    (name "go-github-com-sigstore-sigstore-pkg-signature-kms-hashivault")
-    (version "1.10.5")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/sigstore/sigstore")
-              (commit (go-version->git-ref version
-                                           #:subdir
-                                           "pkg/signature/kms/hashivault"))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0shnvcgz4g7v65biwraahjrbsmr13qmb903al50giak2694qhyyk"))
-       (modules '((guix build utils)
-                  (ice-9 ftw)
-                  (srfi srfi-26)))
-       (snippet
-        #~(begin
-            (define (delete-all-but directory . preserve)
-              (with-directory-excursion directory
-                (let* ((pred (negate (cut member <>
-                                          (cons* "." ".." preserve))))
-                       (items (scandir "." pred)))
-                  (for-each (cut delete-file-recursively <>) items))))
-            (delete-all-but "." "pkg")
-            (delete-all-but "pkg" "signature")
-            (delete-all-but "pkg/signature" "kms")
-            (delete-all-but "pkg/signature/kms" "hashivault")))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:import-path "github.com/sigstore/sigstore/pkg/signature/kms/hashivault"
-      #:unpack-path "github.com/sigstore/sigstore"))
-    (native-inputs
-     (list go-github-com-stretchr-testify))
-    (propagated-inputs
-     (list go-github-com-hashicorp-vault-api
-           go-github-com-jellydator-ttlcache-v3
-           go-github-com-mitchellh-go-homedir
-           go-github-com-sigstore-sigstore))
-    (home-page "https://github.com/sigstore/sigstore")
-    (synopsis "Utilities related to Hashivault KMS")
-    (description
-     "Package hashivault implement the interface with
-@url{https://www.hashicorp.com/en/products/vault HashiCorp Vault} KMS
-service.")
-    (license license:asl2.0)))
-
-(define-public go-github-com-sigstore-timestamp-authority-v2
-  (package
-    (name "go-github-com-sigstore-timestamp-authority-v2")
-    (version "2.0.4")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/sigstore/timestamp-authority")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1pgdxwkyrl10ayhw02n72r02q362gxg7110l9h9isiyqwbrmw2lp"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:skip-build? #t
-      #:import-path "github.com/sigstore/timestamp-authority/v2"
-      #:embed-files #~(list ".*\\.json")
-      #:test-subdirs #~(list "pkg/client" "pkg/x509")))
-    (native-inputs
-     (list go-github-com-go-playground-validator-v10
-           go-github-com-google-go-cmp
-           go-github-com-prometheus-client-golang
-           go-github-com-sigstore-sigstore
-           go-github-com-spf13-cobra
-           go-github-com-spf13-pflag
-           go-github-com-spf13-viper
-           go-github-com-tink-crypto-tink-go-v2
-           go-sigs-k8s-io-release-utils))
-    (propagated-inputs
-     (list go-cloud-google-com-go-security
-           go-github-com-beevik-ntp
-           go-github-com-digitorus-pkcs7
-           go-github-com-digitorus-timestamp
-           go-github-com-go-chi-chi
-           go-github-com-go-openapi-errors
-           go-github-com-go-openapi-loads
-           go-github-com-go-openapi-runtime
-           go-github-com-go-openapi-spec
-           go-github-com-go-openapi-strfmt
-           go-github-com-go-openapi-swag
-           go-github-com-pkg-errors
-           go-github-com-rs-cors
-           go-github-com-sigstore-sigstore-pkg-signature-kms-aws
-           go-github-com-sigstore-sigstore-pkg-signature-kms-azure
-           go-github-com-sigstore-sigstore-pkg-signature-kms-gcp
-           go-github-com-sigstore-sigstore-pkg-signature-kms-hashivault
-           go-github-com-tink-crypto-tink-go-awskms-v2
-           go-github-com-tink-crypto-tink-go-gcpkms-v2
-           go-github-com-tink-crypto-tink-go-hcvault-v2
-           go-github-com-urfave-negroni
-           ;; go-go-step-sm-crypto      ;not packaged yet in Guix
-           go-sigs-k8s-io-yaml))
-    (home-page "https://github.com/sigstore/timestamp-authority")
-    (synopsis "RFC 3161 timestamp verification for Sigstore")
-    (description
-     "This package provides timestamp verification functionality for the
-Sigstore ecosystem, implementing RFC 3161 timestamp response validation.")
-    (license license:asl2.0)))
-
 (define-public go-github-com-shurcool-githubv4
   (package
     (name "go-github-com-shurcool-githubv4")
@@ -17636,90 +17007,6 @@ Features:
 @end itemize")
     (license license:expat)))
 
-(define-public go-github-com-tink-crypto-tink-go-awskms-v2
-  (package
-    (name "go-github-com-tink-crypto-tink-go-awskms-v2")
-    (version "2.1.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/tink-crypto/tink-go-awskms")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0crsky461yyvl04g0gbsz9gh2zmlmgd5li5qk4k7zvmj103gmwlr"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:skip-build? #t
-      #:import-path "github.com/tink-crypto/tink-go-awskms/v2"))
-    (propagated-inputs
-     (list go-github-com-aws-aws-sdk-go
-           go-github-com-tink-crypto-tink-go-v2))
-    (home-page "https://github.com/tink-crypto/tink-go-awskms")
-    (synopsis "Tink Go AWS KMS extension")
-    (description
-     "This is an extension to the @url{https://github.com/tink-crypto/tink-go,
-Tink Go} library that provides support for AWS KMS.")
-    (license license:asl2.0)))
-
-(define-public go-github-com-tink-crypto-tink-go-gcpkms-v2
-  (package
-    (name "go-github-com-tink-crypto-tink-go-gcpkms-v2")
-    (version "2.2.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/tink-crypto/tink-go-gcpkms")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0hf31f26lmpg81k64flsvcx83ngkhazkkf792i5qkq14q4ndsdhw"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:skip-build? #t
-      #:import-path "github.com/tink-crypto/tink-go-gcpkms/v2"))
-    (propagated-inputs
-     (list go-github-com-tink-crypto-tink-go-v2
-           go-google-golang-org-api))
-    (home-page "https://github.com/tink-crypto/tink-go-gcpkms")
-    (synopsis "Tink Go Google Cloud KMS extension")
-    (description
-     "This is an extension to the @url{https://github.com/tink-crypto/tink-go,
-Tink Go} library that provides support for Google Cloud KMS.")
-    (license license:asl2.0)))
-
-(define-public go-github-com-tink-crypto-tink-go-hcvault-v2
-  (package
-    (name "go-github-com-tink-crypto-tink-go-hcvault-v2")
-    (version "2.4.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/tink-crypto/tink-go-hcvault")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1ifwxrsyynkss652wnn2ivhfj8n84m8rz7fjpi8gcx2cppmx9zrv"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:skip-build? #t
-      #:import-path "github.com/tink-crypto/tink-go-hcvault/v2"))
-    (propagated-inputs
-     (list go-github-com-hashicorp-vault-api
-           go-github-com-tink-crypto-tink-go-v2))
-    (home-page "https://github.com/tink-crypto/tink-go-hcvault")
-    (synopsis "Tink Go HashiCorp Vault extension")
-    (description
-     "This is an extension to the @url{https://github.com/tink-crypto/tink-go,
-Tink Go} library that provides support for HashiCorp Vault.")
-    (license license:asl2.0)))
-
 (define-public go-github-com-tj-go-elastic
   (package
     (name "go-github-com-tj-go-elastic")
@@ -22482,7 +21769,6 @@ feature set and features are added on as the need arises.")
     (build-system go-build-system)
     (arguments
      (list
-      #:go go-1.25
       #:build-flags #~(list (string-append "-ldflags="
                                            "-X main.lyrebirdVersion="
                                            #$version " -s -w"))

gnu/packages/golang-xyz.scm

@@ -74,7 +74,6 @@
 ;;; Copyright © 2025 Aleksandr Lebedev <alex.lebedev2003@icloud.com>
 ;;; Copyright © 2026 Carlos Durán Domínguez <wurt@wurt.eu>
 ;;; Copyright © 2026 Giacomo Leidi <therewasa@fishinthecalculator.me>
-;;; Copyright © 2026 Evgeny Pisemsky <mail@pisemsky.site>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;

gnu/packages/golang.scm

@@ -1022,6 +1022,56 @@ in the style of communicating sequential processes (@dfn{CSP}).")
           (map (lambda (suffix) (string-append "armv9" suffix "-a"))
                '("" ".1" ".2" ".3" ".4" ".5"))))
 
+(define-public go-1.23
+  (package
+    (inherit go-1.22)
+    (name "go")
+    (version "1.23.12")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/golang/go")
+             (commit (string-append "go" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0nxcp8wikn93zxipm829dyyagwys13yhf452ai357wzbdzqihm7x"))))
+    (arguments
+     (substitute-keyword-arguments (package-arguments go-1.22)
+       ((#:phases phases)
+        #~(modify-phases #$phases
+            (replace 'disable-more-tests
+              (lambda _
+                #$@(cond
+                     ((target-aarch64?)
+                      ;; https://go-review.googlesource.com/c/go/+/151303
+                      ;; This test is known buggy on aarch64 and is enabled and
+                      ;; disabled upstream with some regularity.
+                      #~((substitute* "src/plugin/plugin_test.go"
+                           (("package plugin_test")
+                            (string-append "// +build !linux linux,!arm64\n\n"
+                                           "package plugin_test")))))
+                     ((target-arm32?)
+                      ;; This test fails when run on aarch64-linux.
+                      #~((substitute* "src/cmd/link/internal/ld/elf_test.go"
+                           (("TestElfBindNow.*" all)
+                            (string-append
+                              all
+                              "        if runtime.GOARCH == \"arm\" {\n"
+                              "                t.Skipf(\"skipping; flaky on armhf\")\n"
+                              "        }\n")))))
+                     (else (list #t)))))))))
+    (properties
+     `((compiler-cpu-architectures
+         ("aarch64" ,@%go-1.23-arm64-micro-architectures)
+         ("armhf" ,@%go-1.17-arm-micro-architectures)
+         ("powerpc64le" ,@%go-1.17-powerpc64le-micro-architectures)
+         ("x86_64" ,@%go-1.18-x86_64-micro-architectures))))
+    (native-inputs
+     ;; setarch was added to the tsan test suite in 1.23.12
+     `(("go" ,util-linux)
+       ,@(package-native-inputs go-1.22)))))
+
 (define-public go-1.24
   (package
     (inherit go-1.22)
@@ -1189,6 +1239,7 @@ in the style of communicating sequential processes (@dfn{CSP}).")
 (define-public go-std-1.20 (make-go-std go-1.20))
 (define-public go-std-1.21 (make-go-std go-1.21))
 (define-public go-std-1.22 (make-go-std go-1.22))
+(define-public go-std-1.23 (make-go-std go-1.23))
 (define-public go-std-1.24 (make-go-std go-1.24))
 (define-public go-std-1.25 (make-go-std go-1.25))
 (define-public go-std-1.26 (make-go-std go-1.26))

gnu/packages/gpodder.scm

@@ -29,6 +29,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (gnu packages)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages base)

gnu/packages/graph.scm

@@ -36,6 +36,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system r)
   #:use-module (guix download)
   #:use-module (guix gexp)

gnu/packages/graphics.scm

@@ -146,6 +146,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system qt)
   #:use-module (guix download)
@@ -1264,6 +1265,51 @@ basic geometries.")
     ;; https://gitlab.com/inkscape/inkscape/issues/784).
     (license license:gpl3+)))
 
+(define-public python-booleanoperations
+  (package
+    (name "python-booleanoperations")
+    (version "0.9.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/typemytype/booleanOperations")
+              (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0ahfgamyq1ndwbr9n8sdx8qhqc2195xnbahylgjpk877hbr2gxav"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      ;; Some tests fail due to small differences in the expected result (see:
+      ;; <https://github.com/typemytype/booleanOperations/issues/69>).
+      #:test-flags
+      #~(list "-k"
+              (string-join
+               (list "not test_QTail_reversed_difference"
+                     "test_QTail_reversed_intersection"
+                     "test_QTail_reversed_union"
+                     "test_QTail_reversed_xor"
+                     "test_Q_difference"
+                     "test_Q_intersection"
+                     "test_Q_union"
+                     "test_Q_xor")
+               " and not "))))
+    (propagated-inputs (list python-fonttools-minimal python-pyclipper))
+    (native-inputs
+     (list python-defcon-bootstrap
+           python-fontpens-bootstrap
+           python-pytest
+           python-setuptools
+           python-setuptools-scm))
+    (home-page "https://github.com/typemytype/booleanOperations")
+    (synopsis "Boolean operations on paths")
+    (description
+     "Boolean operations on paths which uses a super fast
+@url{http://www.angusj.com/delphi/clipper.php, polygon clipper library by
+Angus Johnson}.")
+    (license license:expat)))
+
 (define-public pstoedit
   (package
     (name "pstoedit")

gnu/packages/graphviz.scm

@@ -35,6 +35,7 @@
   #:use-module (guix packages)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix download)
   #:use-module (guix git-download)
   #:use-module (guix utils)
@@ -151,46 +152,32 @@ interfaces for other technical domains.")
 (define-public python-graphviz
   (package
     (name "python-graphviz")
-    (version "0.21")
+    (version "0.20.3")
-    (source
+    (source (origin
-     (origin
+              (method url-fetch)
-       (method git-fetch)
+              (uri (pypi-uri "graphviz" version ".zip"))
-       (uri (git-reference
+              (sha256
-              (url "https://github.com/xflr6/graphviz")
+               (base32
-              (commit version)))
+                "0pcjnnhprs1hb4r9jr7r4qjxc7lzsjlka8d5gcp3kym9ws0vrmh9"))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "00hgh1ab54h2jhqnwn5vrggg0hqbwmjn0cx2a9nw4vi1wmijib53"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-      #:test-flags
-      #~(list "--ignore=tests/backend/")
       #:phases
       #~(modify-phases %standard-phases
           (add-after 'unpack 'patch-pytest-options
             (lambda _
-              (substitute* "pyproject.toml"
+              (substitute* "setup.cfg"
-                ((".*--cov-report=term.*") ""))))
+                ((".*doctest.*") "")
-          (add-before 'check 'pre-check
+                (("--cov.*") ""))))
-            (lambda _
+          (replace 'check
-              (setenv "HOME" "/tmp")))
+            (lambda* (#:key tests? test-flags #:allow-other-keys)
-          (add-after 'check 'test-backend
-            (lambda* (#:key tests? #:allow-other-keys)
-              ;; Running tests together fails with error:
-              ;;
-              ;; import file mismatch:
-              ;; imported module 'conftest' has this __file__ attribute:
-              ;;   /<...>/source/tests/backend/conftest.py
-              ;; which is not the same as the test file we want to collect:
-              ;;   /<...>/source/tests/conftest.py
-              ;;
-              ;; HINT: remove __pycache__ / .pyc files and/or use a unique
-              ;; basename for your test file modules
               (when tests?
-                (invoke "pytest" "-v" "tests/backend/")))))))
+                (setenv "HOME" "/tmp")
+                  (apply invoke "python" "run-tests.py" test-flags)))))))
     (native-inputs
-     (list graphviz
+     (list unzip
+           ;; For tests.
+           graphviz
            python-mock
            python-pytest
            python-pytest-mock
@@ -259,6 +246,7 @@ layout algorithms.")
      (list graphviz
            python-defusedxml
            python-pytest
+           python-pytest-cov
            python-setuptools
            python-typing-extensions))
     (propagated-inputs

gnu/packages/gtk.scm

@@ -71,6 +71,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system waf)
   #:use-module (gnu packages)
@@ -1122,7 +1123,7 @@ application suites.")
 (define-public gtk
   (package
     (name "gtk")
-    (version "4.22.1")
+    (version "4.20.3")
     (source
      (origin
        (method url-fetch)
@@ -1130,11 +1131,9 @@ application suites.")
                            (version-major+minor version)  "/"
                            name "-" version ".tar.xz"))
        (sha256
-        (base32 "1z2mkmazc2d51jbg3qwwdycycqiwswm88nhw6bxscz8j86f5lyyd"))
+        (base32 "0ly1gqc6ybxv5f2a9hvjp5k6l9mfzy2yv8iy2xqnr9l8628g4wr8"))
        (patches
-        (search-patches "gtk4-demo-reproducible.patch"
+        (search-patches "gtk4-respect-GUIX_GTK4_PATH.patch"))
-                        "gtk4-needs-udmabuf.patch"
-                        "gtk4-respect-GUIX_GTK4_PATH.patch"))
        (modules '((guix build utils)))))
     (build-system meson-build-system)
     (outputs '("out" "bin" "doc"))
@@ -1258,10 +1257,8 @@ application suites.")
               (setenv "XDG_CACHE_HOME" (getcwd))))
           (add-before 'check 'pre-check
             (lambda* (#:key inputs #:allow-other-keys)
-              ;; Tests require a running X server.  The '-noreset' option is
+              ;; Tests require a running X server.
-              ;; necessary to avoid spurious "Failed to open display" test
+              (system "Xvfb :1 +extension GLX &")
-              ;; errors.
-              (system "Xvfb :1 +extension GLX -screen 0 1024x768x24 -noreset &")
               (setenv "DISPLAY" ":1")
               ;; Tests write to $HOME.
               (setenv "HOME" (getcwd))
@@ -1304,7 +1301,6 @@ application suites.")
            docbook-xsl
            gettext-minimal
            `(,glib "bin")
-           glibc-utf8-locales           ;some tests require en_US.UTF-8
            gobject-introspection        ;for building introspection data
            graphene
            gtk-doc/stable               ;for building documentation
@@ -1372,8 +1368,8 @@ application suites.")
     (native-search-paths
      (list
       (search-path-specification
-        (variable "GUIX_GTK4_PATH")
+       (variable "GUIX_GTK4_PATH")
-        (files '("lib/gtk-4.0")))))
+       (files '("lib/gtk-4.0")))))
     (search-paths native-search-paths)
     (home-page "https://www.gtk.org/")
     (synopsis "Cross-platform widget toolkit")

gnu/packages/guile-xyz.scm

@@ -5787,43 +5787,6 @@ reading and writing PNG data, as well as some graphic primitives and basic image
 processing filters.")
     (license license:gpl3+)))
 
-(define-public guile-pnm
-  (package
-    (name "guile-pnm")
-    (version "0.2.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/artyom-poptsov/guile-pnm")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "06kgp1gh8hdj1j6w7i981prx93wfjpayrnjlydlzs7l5j04l4m3a"))))
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:make-flags
-      #~(list "GUILE_AUTO_COMPILE=0"))) ;to prevent guild warnings
-    (native-inputs (list autoconf
-                         automake
-                         pkg-config
-                         texinfo
-                         ;; needed when cross-compiling.
-                         guile-3.0
-                         guile-lib
-                         guile-smc))
-    (inputs (list guile-3.0 guile-lib))
-    (propagated-inputs (list guile-smc))
-    (home-page "https://github.com/artyom-poptsov/guile-pnm")
-    (synopsis "NetBPM (PNM) library for GNU Guile")
-    (description
-     "@code{guile-pnm} is a GNU Guile library for working with the
-@url{https://en.wikipedia.org/wiki/Netpbm, NetPBM} format (also known as PNM),
-including portable bitmap (PBM), portable graymap (PGM) and portable
-pixel (PPM) variants.")
-    (license license:gpl3+)))
-
 (define-public guile-cv
   (package
     (name "guile-cv")

gnu/packages/hardware.scm

@@ -117,6 +117,7 @@
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix download)
   #:use-module (guix gexp)

gnu/packages/ibus.scm

@@ -43,6 +43,7 @@
   #:use-module (guix build-system glib-or-gtk)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix utils)
   #:use-module (gnu packages)
   #:use-module (gnu packages anthy)

gnu/packages/image-processing.scm

@@ -58,6 +58,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (gnu packages)
   #:use-module (gnu packages algebra)

gnu/packages/image-viewers.scm

@@ -66,6 +66,7 @@
   #:use-module (guix build-system copy)
   #:use-module (guix build-system go)
   #:use-module (guix build-system meson)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system qt)
   #:use-module (gnu packages autotools)
@@ -668,7 +669,7 @@ and WebP.")
 (define-public mcomix
   (package
     (name "mcomix")
-    (version "3.1.1")
+    (version "3.1.0")
     (source
      (origin
        (method url-fetch)
@@ -676,7 +677,7 @@ and WebP.")
                            "mcomix-" version ".tar.gz"))
        (sha256
         (base32
-         "1y6fps1fbzjc4sdm381432zvrq97iadbz4yyxxsfnzf0ggnsl2m1"))))
+         "09y4nhlcqvvhz0wscx4zpqxmyhiwh8wrjnhk52awxhzvgyx6wa7r"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -719,14 +720,8 @@ and WebP.")
                (wrap-program prog
                  `("GI_TYPELIB_PATH" = (,(getenv "GI_TYPELIB_PATH"))))))))))
     (native-inputs (list python-setuptools))
-    (inputs (list bash-minimal
+    (inputs
-                  gobject-introspection
+     (list bash-minimal p7zip python python-pillow python-pygobject python-pycairo gtk+))
-                  gtk+
-                  p7zip
-                  python
-                  python-pillow
-                  python-pycairo
-                  python-pygobject))
     (home-page "https://sourceforge.net/p/mcomix/wiki/Home/")
     (synopsis "Image viewer for comics")
     (description "MComix is a customizable image viewer that specializes as

gnu/packages/image.scm

@@ -29,7 +29,7 @@
 ;;; Copyright © 2020, 2025 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2020 Zhu Zihao <all_but_last@163.com>
 ;;; Copyright © 2020, 2021, 2022, 2023, 2024 Vinicius Monego <monego@posteo.net>
-;;; Copyright © 2021, 2026 Sharlatan Hellseher <sharlatanus@gmail.com>
+;;; Copyright © 2021 Sharlatan Hellseher <sharlatanus@gmail.com>
 ;;; Copyright © 2021 Nicolò Balzarotti <nicolo@nixo.xyz>
 ;;; Copyright © 2021 Alexandr Vityazev <avityazev@posteo.org>
 ;;; Copyright © 2022 Jai Vetrivelan <jaivetrivelan@gmail.com>
@@ -42,9 +42,8 @@
 ;;; Copyright © 2025 Josep Bigorra <jjbigorra@gmail.com>
 ;;; Copyright © 2025 Jake Forster <jakecameron.forster@gmail.com>
 ;;; Copyright © 2025 Ghislain Vaillant <ghislain.vaillant@inria.fr>
-;;; Copyright © 2025 Junker <dk@junkeria.club>
-;;; Copyright © 2025 Hugo Buddelmeijer <hugo@buddelmeijer.nl>
 ;;; Copyright © 2026 Carlos Durán Domínguez <wurt@wurt.eu>
+;;; Copyright © 2025 Junker <dk@junkeria.club>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -129,6 +128,7 @@
   #:use-module (guix build-system guile)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system scons)
   #:use-module (guix deprecation)
@@ -2967,89 +2967,77 @@ GIF, TIFF, WEBP, BMP, PNG, XPM formats.")
 (define-public mypaint
   (package
     (name "mypaint")
-    ;; The latest changes contains support for Python 3.12+.
+    (version "2.0.1")
-    (properties '((commit . "35aa9d33cd3deba6cafea6d8fc901b5a1d161ceb")
+    (source (origin
-                  (revision . "0")))
+              (method url-fetch)
-    (version (git-version "2.0.1"
+              (uri (string-append "https://github.com/mypaint/mypaint/"
-                          (assoc-ref properties 'revision)
+                                  "releases/download/v" version "/mypaint-"
-                          (assoc-ref properties 'commit)))
+                                  version ".tar.xz"))
-    (source
+              (sha256
-     (origin
+               (base32
-       (method git-fetch)
+                "05mvay73vb9d2sh1ckv4vny45n059dmsps1jcppjizfmrpbkgr7k"))))
-       (uri (git-reference
+    (build-system python-build-system)
-              (url "https://github.com/mypaint/mypaint")
-              (commit (assoc-ref properties 'commit))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1p1i799dzpx0zr7chkz0pjdq9l32ahckgyagbiw82c27mwxqabfh"))))
-    (build-system pyproject-build-system)
     (arguments
-     (list
+     `(#:imported-modules ((guix build glib-or-gtk-build-system)
-      #:imported-modules `(,@%pyproject-build-system-modules
+                           ,@%python-build-system-modules)
-                           (guix build glib-or-gtk-build-system))
+       #:modules ((guix build python-build-system)
-      #:modules '((guix build pyproject-build-system)
                   ((guix build glib-or-gtk-build-system) #:prefix glib-or-gtk:)
                   (guix build utils))
-      #:phases
+       ;; XXX: Tests are not discovered.
-      #~(modify-phases %standard-phases
+       #:tests? #false
-          (add-after 'install 'move-assets-to-data
+       #:phases
-            ;; XXX: Check why.
+       (modify-phases %standard-phases
-            ;;
+         (add-after 'unpack 'python3.11-compatibility
-            ;; ERROR: gui.application: Missing icon 'org.mypaint.MyPaint':
+           (lambda _
-            ;; check that mypaint icons have been installed into
+             (substitute* "setup.py"
-            ;; /gnu/store/<...>/data/icons
+               (("\"rU\"") "\"r\"")
-            ;;
+               (("test_suite='tests'.*") ""))
-            ;; gi.repository.GLib.GError: g-file-error-quark: Failed to open
+             (substitute* "setup.cfg"
-            ;; file
+               (("install-") "install_"))
-            ;; “/gnu/store/<...>/data/mypaint/pixmaps/cursor_color_picker.png”:
+             ;; This file makes Python confuse it for a module, so we rename
-            ;; No such file or directory (4)
+             ;; it.
-            (lambda _
+             (rename-file "lib/xml.py" "lib/xmlo.py")
-              (let* ((data (string-append #$output "/data"))
+             (substitute* (find-files "." "\\.py$")
-                     (data-icons (string-append data "/icons"))
+               (("lib.xml") "lib.xmlo"))
-                     (data-mypaint (string-append data "/mypaint"))
+             ;; This procedure has been removed.
-                     (icons (string-append #$output "/icons"))
+             (substitute* "lib/gettext_setup.py"
-                     (mypaint (string-append #$output "/mypaint")))
+               (("c = gettext.bind_textdomain_codeset.*") "c = True\n"))))
-                (mkdir-p data-icons)
+         (add-after 'install 'glib-or-gtk-wrap
-                (mkdir-p data-mypaint)
+           (assoc-ref glib-or-gtk:%standard-phases 'glib-or-gtk-wrap))
-                (copy-recursively icons data-icons)
+         (add-after 'install 'wrap-program
-                (copy-recursively mypaint data-mypaint)
+           (lambda* (#:key outputs inputs #:allow-other-keys)
-                (delete-file-recursively icons)
+             (let* ((out (assoc-ref outputs "out"))
-                (delete-file-recursively mypaint))))
+                    (gdk-pixbuf (assoc-ref inputs "gdk-pixbuf"))
-          (add-after 'install 'glib-or-gtk-wrap
+                    (gtk+ (assoc-ref inputs "gtk+")))
-            (assoc-ref glib-or-gtk:%standard-phases 'glib-or-gtk-wrap))
+               ;; This is replaced with an invalid shebang.
-          (add-after 'install 'wrap-program
+               (substitute* (string-append out "/bin/mypaint")
-            (lambda* (#:key outputs inputs #:allow-other-keys)
+                 (("#!python")
-              (wrap-program (string-append #$output "/bin/mypaint")
+                  (string-append "#!" (which "python3"))))
-                `("GI_TYPELIB_PATH" ":" prefix
+               (wrap-program (string-append out "/bin/mypaint")
-                  (,(getenv "GI_TYPELIB_PATH"))))))
+                 `("GI_TYPELIB_PATH" ":" prefix
-          (add-before 'check 'pre-check
+                   (,(getenv "GI_TYPELIB_PATH")))))))
-            (lambda _
+         (add-before 'check 'pre-check
-              ;; Need to get the 'lib' in 'build/'.
+           (lambda _
-              (delete-file-recursively "lib")
+             ;; Tests need writing access
-              ;; Tests need writing access
+             (setenv "HOME" "/tmp"))))))
-              (setenv "HOME" "/tmp"))))))
     (native-inputs
-     (list gettext-minimal
+     (list pkg-config
            gobject-introspection
-           pkg-config
+           swig-4.0
-           python-pytest
+           gettext-minimal))
-           python-setuptools
-           swig))
     (inputs
      (list bash-minimal
-           gdk-pixbuf
            gtk+
+           (librsvg-for-system)
            hicolor-icon-theme
+           libmypaint
+           mypaint-brushes
            json-c
            lcms
-           libmypaint-next
-           libpng
-           (librsvg-for-system)
-           mypaint-brushes
            python-numpy
            python-pycairo
            python-pygobject))
-    (home-page "https://mypaint.org/")
+    (home-page "http://mypaint.org/")
     (synopsis "Fast and simple painting app for artists")
     (description
      "MyPaint is a simple drawing and painting program that works well with

gnu/packages/instrumentation.scm

@@ -63,6 +63,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system linux-module)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix download)
   #:use-module (guix gexp)
   #:use-module (guix git-download)

gnu/packages/irc.scm

@@ -47,6 +47,7 @@
   #:use-module (guix build-system guile)
   #:use-module (guix build-system haskell)
   #:use-module (guix build-system meson)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix build-system qt)
   #:use-module (gnu packages)

gnu/packages/iso-codes.scm

@@ -231,6 +231,8 @@ concerned with representation of names for languages and language groups.")
           (add-after 'unpack 'fix-pytest-config
             (lambda _  ; Removes the need for python-pytest-cov.
               (substitute* "pyproject.toml"
+                (("--cov --cov-report=html --cov-report=term-missing")
+                 "")
                 (("^required_plugins =.*")
                  "")))))))
     (native-inputs (list python-poetry-core python-pytest))

gnu/packages/java.scm

@@ -8941,12 +8941,6 @@ generated sources by ANTLR.")))
           (add-after 'unpack 'chdir
             (lambda _
               (chdir "runtime/Python3")))
-          ;; TODO: Remove when updating ANTLR4:
-          ;; https://github.com/antlr/antlr4/pull/4593
-          (add-after 'chdir 'fix-python-3.12-compatibility
-            (lambda _
-              (substitute* "tests/TestIntervalSet.py"
-                (("assertEquals") "assertEqual"))))
           (add-after 'chdir 'regenerate-parsers
             (lambda _
               (invoke "antlr4" "-no-listener" "-Dlanguage=Python3"

gnu/packages/jupyter.scm

@@ -46,6 +46,7 @@
   #:use-module (guix git-download)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
   #:use-module (guix utils)
   #:use-module (gnu packages algebra)
   #:use-module (gnu packages bash)
@@ -173,7 +174,8 @@ simulation, statistical modeling, machine learning and much more.")
            python-hatchling
            python-ipyparallel-bootstrap
            python-pytest
-           python-pytest-asyncio-0.26
+           python-pytest-asyncio-0.26  ;some tests fail with v1
+           python-pytest-cov
            python-pytest-timeout))
     (home-page "https://ipython.org")
     (synopsis "IPython Kernel for Jupyter")
@@ -375,7 +377,7 @@ the namespace @code{/nbclassic/}.")
     (build-system pyproject-build-system)
     (arguments
      (list
-      ;; tests: 305 passed, 7 skipped, 18 deselected, 2696 warning
+      ;; tests: 307 passed, 7 skipped, 16 deselected, 9 warnings
       #:test-flags
       '(list "-k" (string-append
                    ;; TODO: This tests fails because nbconvert does not
@@ -391,12 +393,6 @@ the namespace @code{/nbclassic/}.")
                    ;; tornado.simple_httpclient.HTTPTimeoutError: Timeout
                    ;; during request
                    " and not test_connections")
-        ;; AttributeError: 'TestContentsManager' object has no attribute
-        ;; 'assertDictContainsSubset'
-        (string-append "--deselect=notebook/services/contents/tests/"
-                       "test_manager.py::TestContentsManager::test_get")
-        (string-append "--deselect=notebook/services/contents/tests/"
-                       "test_manager.py::TestContentsManagerNoAtomic::test_get")
         ;; These tests require a browser.
         "--ignore=notebook/tests/selenium")
       #:phases
@@ -441,12 +437,15 @@ the namespace @code{/nbclassic/}.")
            python-tornado
            python-traitlets))
     (native-inputs
-     (list python-jupyter-server
+     (list python-coverage
+           python-jupyter-server
            python-nbval
            python-pytest
+           python-pytest-cov
            python-requests
            python-requests-unixsocket2
-           python-setuptools))
+           python-setuptools
+           python-wheel))
     (home-page "https://jupyter.org/")
     (synopsis "Web-based notebook environment for interactive computing")
     (description
@@ -985,6 +984,7 @@ the JupyterLab CSS variables.")
            python-openapi-spec-validator
            python-pytest
            python-pytest-console-scripts
+           python-pytest-cov
            python-pytest-jupyter
            python-pytest-timeout
            python-requests-mock
@@ -1236,6 +1236,7 @@ are interactive HTML widgets for Jupyter notebooks and the IPython kernel.")
     (native-inputs (list python-ansi2html
                          python-hatchling
                          python-pytest-console-scripts
+                         python-pytest-cov
                          python-pytest-xdist
                          python-tornado))
     (home-page "https://github.com/jupyterlite/jupyterlite")
@@ -1341,6 +1342,7 @@ and a default CommManager that can be used.")
            python-flaky
            python-pytest
            python-pytest-asyncio
+           python-pytest-cov
            python-testpath
            python-xmltodict))
     (home-page "https://jupyter.org")
@@ -1643,6 +1645,7 @@ Docker registry.")
      (list python-jupyter-packaging
            python-nbval
            python-pytest
+           python-pytest-cov
            python-setuptools))
     (home-page "https://github.com/vidartf/ipydatawidgets")
     (synopsis "Widgets to help facilitate reuse of large datasets across widgets")
@@ -1654,7 +1657,7 @@ datasets across widgets.")
 (define-public python-papermill
   (package
     (name "python-papermill")
-    (version "2.7.0")
+    (version "2.6.0")
     (source
      (origin
        (method git-fetch)
@@ -1663,25 +1666,26 @@ datasets across widgets.")
               (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0lafh4lazx4rc3ly746bjflmihkzf9rhp788bni1l4vq12ks6a49"))))
+        (base32 "1i5zikvl9inficryqfz0v885v24pcs78cj5nzyjw0x232kxbj41p"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-      ;; tests: 503 passed, 2 deselected, 226 warnings
+      ;; tests: 500 passed, 3 skipped, 2 deselected, 29 warnings
       #:test-flags
       ;; Do not bother testing Azure, AWS, and Google Cloud features.
       #~(list "--ignore=papermill/tests/test_abs.py"
               "--ignore=papermill/tests/test_adl.py"
               "--ignore=papermill/tests/test_gcs.py"
               "--ignore=papermill/tests/test_s3.py"
-              #$@(map (lambda (ls)
+              ;; AssertionError
-                        (string-append "--deselect=papermill/tests/"
+              #$@(map (lambda (test) (string-append "--deselect="
-                                       (string-join ls "::")))
+                                                    "papermill/tests/"
-                      ;; AssertionError: 'error' != 'display_data'
+                                                    "test_execute.py::"
-                      '(("test_execute.py" "TestBrokenNotebook2" "test")
+                                                    test))
-                        ;; NameError: name 'FileSelector' is not defined
+                      (list "TestBrokenNotebook2::test"
-                        ("test_hdfs.py" "HDFSTest" "test_hdfs_listdir"))))))
+                            "TestOutputFormatting::test_output_formatting")))))
     (propagated-inputs (list python-aiohttp
+                             python-ansicolors
                              python-click
                              python-entrypoints
                              python-nbclient

gnu/packages/libffi.scm

@@ -45,6 +45,7 @@
   #:use-module (gnu packages sphinx)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system pyproject)
+  #:use-module ((guix build-system python) #:select (pypi-uri))
   #:use-module (guix build-system ruby))
 
 (define-public libffi

gnu/packages/libftdi.scm

@@ -33,7 +33,6 @@
   #:use-module (gnu packages libusb)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages python)
-  #:use-module (gnu packages python-build)
   #:use-module (gnu packages swig)
   #:use-module (gnu packages textutils))
 
@@ -96,7 +95,7 @@
                                                  "/html"))))))
       #:tests? #f))                     ; tests fail without access to USB
     (native-inputs
-     (list doxygen graphviz pkg-config python python-setuptools swig))
+     (list doxygen graphviz pkg-config python swig-4.0))
     (inputs
      (list boost libconfuse))
     (propagated-inputs

gnu/packages/libreoffice.scm

@@ -35,6 +35,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system glib-or-gtk)
   #:use-module (guix build-system gnu)
+  #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
   #:use-module (guix gexp)
   #:use-module (guix download)