From 1d739bcc1594de90458e88e890faa22bd57c00c2 Mon Sep 17 00:00:00 2001 From: Andreas Enge Date: Tue, 18 Nov 2025 17:52:28 +0100 Subject: [PATCH] gnu: Remove vbz-compression. * gnu/packages/bioinformatics.scm (vbz-compression): Delete variable. Fixes: guix/guix#3640 Change-Id: I996c211af44a7342cb83249c0a9347f11d324069 --- gnu/packages/bioinformatics.scm | 37 --------------------------------- 1 file changed, 37 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 5c137889ee..a1f791ddfb 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -22207,43 +22207,6 @@ datasets to ascertain that it achieves high sensitivity and specificity in multiple experimental contexts.") (license license:expat))) -(define-public vbz-compression - (package - (name "vbz-compression") - (version "1.0.13") - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/nanoporetech/vbz_compression/") - (commit version) - ;; We include the streamvbyte sources - (recursive? #true))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "1jf5i5v0h58s7w6rhgi4w1vvxnk9jzbgmiic14d48ngr204m0w5c")))) - (build-system cmake-build-system) - (arguments - `(#:configure-flags - '("-DENABLE_CONAN=OFF" - ;; Python things aren't even installed, so we might as well - ;; disable building them. - "-DENABLE_PYTHON=OFF"))) - (inputs - (list ;("hdf5" ,hdf5-1.10) - `(,zstd "lib"))) - (native-inputs - (list googlebenchmark)) - (home-page "https://github.com/nanoporetech/vbz_compression/") - (synopsis "VBZ compression plugin for nanopore signal data") - (description - "VBZ Compression uses variable byte integer encoding to compress -nanopore signal data. The performance of VBZ is achieved by taking -advantage of the properties of the raw signal and therefore is most -effective when applied to the signal dataset.") - (license license:mpl2.0))) - (define-public tbsp (let ((commit "dc30c03868233c5504299c9cb0d7b2064ba9cb41") (revision "2"))