From 1e7fdebe25951760e20b5bc733d0ea95ed8c4cfe Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Mon, 9 Feb 2026 11:55:22 +0100 Subject: [PATCH] gnu: rcas-web: Update to 0.2.0. * gnu/packages/bioinformatics.scm (rcas-web): Update to 0.2.0. [inputs]: Add r-biocmanager. Change-Id: I8ddf52180700ca917e75e099378c4fe9a7cdd9bb --- gnu/packages/bioinformatics.scm | 93 ++++++++++++++++----------------- 1 file changed, 46 insertions(+), 47 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9a9bf063fe..825df81484 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2014-2025 Ricardo Wurmus +;;; Copyright © 2014-2026 Ricardo Wurmus ;;; Copyright © 2015, 2016, 2017, 2018 Ben Woodcroft ;;; Copyright © 2015, 2016, 2018, 2019, 2020 Pjotr Prins ;;; Copyright © 2015 Andreas Enge @@ -15077,53 +15077,52 @@ characteristic tag shift values in these assays.") (license license:bsd-3)))) (define-public rcas-web - (let ((commit "71c93e3835653beb4eaa6e89b860bee3779729b8") - (revision "2")) - (package - (name "rcas-web") - (version (git-version "0.1.0" revision commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/BIMSBbioinfo/rcas-web") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "0232g0f7g0w5cgaib462zbfssvfq8i0iqv5b5wfmbrbn0sw99l9a")))) - (build-system gnu-build-system) - (arguments - (list - #:phases - #~(modify-phases %standard-phases - (add-after 'install 'wrap-executable - (lambda* (#:key inputs outputs #:allow-other-keys) - (let* ((json #$(this-package-input "guile-json")) - (redis #$(this-package-input "guile-redis")) - (path (string-append - json "/share/guile/site/3.0:" - redis "/share/guile/site/3.0"))) - (wrap-program (string-append #$output "/bin/rcas-web") - `("GUILE_LOAD_PATH" ":" = (,path)) - `("GUILE_LOAD_COMPILED_PATH" ":" = (,path)) - `("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE")))))))))) - (inputs - (list bash-minimal - r-minimal - r-rcas - guile-3.0 - guile-json-4 - guile-redis)) - (native-inputs - (list autoconf - automake - pkg-config)) - (home-page "https://github.com/BIMSBbioinfo/rcas-web") - (synopsis "Web interface for RNA-centric annotation system (RCAS)") - (description "This package provides a simple web interface for the + (package + (name "rcas-web") + (version "0.2.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/BIMSBbioinfo/rcas-web") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0n1mh1132dx0y0ln2rhdy02rssyzp2xa2im5ynzjpnxxw0r6fgip")))) + (build-system gnu-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'install 'wrap-executable + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((json #$(this-package-input "guile-json")) + (redis #$(this-package-input "guile-redis")) + (path (string-append + json "/share/guile/site/3.0:" + redis "/share/guile/site/3.0"))) + (wrap-program (string-append #$output "/bin/rcas-web") + `("GUILE_LOAD_PATH" ":" = (,path)) + `("GUILE_LOAD_COMPILED_PATH" ":" = (,path)) + `("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE")))))))))) + (inputs + (list bash-minimal + r-minimal + r-rcas + r-biocmanager + guile-3.0 + guile-json-4 + guile-redis)) + (native-inputs + (list autoconf + automake + pkg-config)) + (home-page "https://github.com/BIMSBbioinfo/rcas-web") + (synopsis "Web interface for RNA-centric annotation system (RCAS)") + (description "This package provides a simple web interface for the @dfn{RNA-centric annotation system} (RCAS).") - (license license:agpl3+)))) + (license license:agpl3+))) (define-public r-chipkernels (let ((commit "c9cfcacb626b1221094fb3490ea7bac0fd625372")