diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 682c74ac43..ff6745ee6b 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6026,37 +6026,22 @@ estimates for each correlation element.") ;; Bioconductor 3.23. (arguments (list - #:phases - '(modify-phases %standard-phases - (add-after 'unpack 'disable-bad-tests - (lambda _ - (with-directory-excursion "tests/testthat" - (substitute* "test-clonal-bias-functions.R" - ((".*bias_(histogram|ridge_plot|lineplot) works.*" m) - (string-append m "skip('guix')\n"))) - (substitute* "test-clonal-diversity-functions.R" - ((".*rank_abundance works.*" m) - (string-append m "skip('guix')\n")) - ((".*clonal_diversity works.*" m) - (string-append m "skip('guix')\n")) - ((".*clonal_count works.*" m) - (string-append m "skip('guix')\n")) - ((".*mds_plot works.*" m) - (string-append m "skip('guix')\n"))) - (substitute* "test-clonal-pattern-functions.R" - ((".*barcode_ggheatmap works.*" m) - (string-append m "skip('guix')\n")) - ((".*barcode_ggheatmap_stat works.*" m) - (string-append m "skip('guix')\n")) - ((".*barcode_binary_heatmap works.*" m) - (string-append m "skip('guix')\n")) - ((".*clonal_contribution works.*" m) - (string-append m "skip('guix')\n"))) - (substitute* "test-shared-clonality-functions.R" - ((".*scatter_plot works.*" m) - (string-append m "skip('guix')\n")) - ((".*cor_plot works.*" m) - (string-append m "skip('guix')\n"))))))))) + #:skipped-tests + '(("test-clonal-bias-functions.R" + "bias_(histogram|ridge_plot|lineplot) works") + ("test-clonal-diversity-functions.R" + "clonal_count works" + "clonal_diversity works" + "mds_plot works" + "rank_abundance works") + ("test-clonal-pattern-functions.R" + "barcode_binary_heatmap works" + "barcode_ggheatmap works" + "barcode_ggheatmap_stat works" + "clonal_contribution works") + ("test-shared-clonality-functions.R" + "cor_plot works" + "scatter_plot works")))) (propagated-inputs (list r-circlize r-cowplot