From 514aafe8145d5e6f631a253ff188268f613afc8e Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Sat, 4 Apr 2026 10:43:29 +0200
Subject: [PATCH] gnu: r-mosdef: Replace custom phase with SKIPPED-TESTS
 argument.

* gnu/packages/bioconductor.scm (r-mosdef)[arguments]: Remove phase
'disable-bad-tests; specify #:skipped-tests instead.

Change-Id: Iadf53cbebf8e30b1cd8a4a793a7853b01318de39
---
 gnu/packages/bioconductor.scm | 13 ++++---------
 1 file changed, 4 insertions(+), 9 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 8cc56d612e..6a1e4ed9d0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -11646,15 +11646,10 @@ location information (and the reverse operation) is implemented as well.")
     (build-system r-build-system)
     (arguments
      (list
-      #:phases
-      '(modify-phases %standard-phases
-         (add-after 'unpack 'disable-bad-tests
-           (lambda _
-             ;; Genome length information unavailable.
-             (with-directory-excursion "tests/testthat"
-               (substitute* "test-check_inputs.R"
-                 ((".*res_de and de_container are related.*" m)
-                  (string-append m "skip('guix')\n")))))))))
+      #:skipped-tests
+      '(("test-check_inputs.R"
+         ;; Genome length information unavailable.
+         "res_de and de_container are related"))))
     (propagated-inputs (list r-annotationdbi
                              r-clusterprofiler
                              r-deseq2