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gnu: python-scikit-bio: Update to 0.5.9.

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* gnu/packages/bioinformatics.scm (python-scikit-bio): Update to 0.5.9.
[source]: Add patch.
[arguments]: Disable one test via #:test-flags; adjust 'compatibility phase;
update 'check phase.
[propagated-inputs]: Remove python-cachecontrol, python-lockfile, and
python-scikit-learn; add python-requests.
* gnu/packages/patches/python-scikit-bio-1887.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Change-Id: Ie57b0256cf695e5ea088545cd2102335303a93e7
This commit is contained in:
Ricardo Wurmus
2024-01-11 13:34:33 +01:00
parent a8c1d812a0
commit 65d021a950
3 changed files with 122 additions and 27 deletions
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gnu/local.mk
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@@ -1926,6 +1926,7 @@ dist_patch_DATA = \
%D%/packages/patches/python-robotframework-atest.patch \
%D%/packages/patches/python-robotframework-source-date-epoch.patch \
%D%/packages/patches/python-robotframework-sshlibrary-rf5-compat.patch \
%D%/packages/patches/python-scikit-bio-1887.patch \
%D%/packages/patches/python-scikit-optimize-1148.patch \
%D%/packages/patches/python-scikit-optimize-1150.patch \
%D%/packages/patches/python-typing-inspect-fix.patch \