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gnu: python-scitools-iris: Fix build by updating to 3.12.3.

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* gnu/packages/geo.scm (python-scitools-iris): Update to 3.12.3.
[source]: Switch to git-fetch.
[arguments] <#:phases>: Update patches and tests to 3.12.3.
[native-inputs]: Remove python-wheel; add python-pytest-mock.

Change-Id: I69422fc4e7b60a4676c20d499e75f2afb6e488d5
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
This commit is contained in:
Hugo Buddelmeijer
2025-10-09 23:24:15 +02:00
committed by Sharlatan Hellseher
parent dd4eb8e4bf
commit 6d1bea21a3
1 changed files with 30 additions and 12 deletions
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42
gnu/packages/geo.scm
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@@ -2603,13 +2603,16 @@ from multiple records.")
(define-public python-scitools-iris
(package
(name "python-scitools-iris")
(version "3.11.1")
(version "3.12.3") ;3.13.x fails some tests
(source
(origin
(method url-fetch)
(uri (pypi-uri "scitools_iris" version))
(method git-fetch)
(uri (git-reference
(url "https://github.com/SciTools/iris")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "19qwmi7amr8q2dd17scch4zvdly3vqc23v5zwpq8qw45vmldxfrq"))))
(base32 "09al2nkn1ndjib84fck61njz3y76k7zn7496gwaq582h30akxd1n"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -2682,18 +2685,25 @@ from multiple records.")
"test_label_dim_end"
"test_label_dim_start"
"test_lenient_handling"
"test_load_laea_grid"
"test_load_pp_timevarying_orography"
"test_load_pp_timevarying_orthography"
"test_mdtol"
"test_netcdf_v3"
"test_no_delayed_writes"
"test_no_transpose"
"test_no_u"
"test_no_v"
"test_non_existent_coord"
"test_none"
"test_perfect_corr"
"test_perfect_corr_all_dims"
"test_points"
"test_python_versions"
"test_realfile_loadsave_equivalence"
"test_realise_data"
"test_realise_data_multisource"
"test_realistic"
"test_scheduler_types"
"test_single_coord"
"test_stream"
@@ -2710,13 +2720,20 @@ from multiple records.")
(add-after 'unpack 'relax-requirements
(lambda _
(substitute* "requirements/pypi-core.txt"
;; dask[array]>=2022.9.0,!=2024.8.0, <2024.9
((", <2024.9") ""))))
;; GeoVista is not packaged yet, "--ignore" option did not work to
;; skip test files.
;; dask[array]>=2025.1.0 # github.com/SciTools/iris/issues/6264
;; TODO: Update python-dask to >=2025.1.0 to fix referenced bug.
((">=2025.1.0") ""))))
(add-after 'unpack 'set-version
(lambda _
(setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)))
(add-after 'unpack 'delete-failing-test-files
(lambda _
(with-directory-excursion "lib/iris/tests"
;; Tries to load the test data on import. Uncomment for 3.13.x.
;; (delete-file
;; "tests/integration/netcdf/derived_bounds/test_bounds_files.py")
;; GeoVista is not packaged yet, "--ignore" option did not work
;; to skip test files.
(for-each delete-file-recursively
(list "integration/experimental/geovista"
"unit/experimental/geovista")))))
@@ -2724,6 +2741,7 @@ from multiple records.")
(lambda _
(let ((netcdf #$(this-package-native-input "netcdf")))
(substitute* (list "lib/iris/tests/__init__.py"
;; "tests/_shared_utils.py" ;for 3.13.x.
"lib/iris/tests/stock/netcdf.py")
(("env_bin_path\\(\"ncgen\"\\)")
(format #f "'~a/bin/ncgen'" netcdf))
@@ -2739,16 +2757,16 @@ from multiple records.")
python-filelock
python-imagehash
python-pytest
python-pytest-xdist
python-pytest-mock
python-pytest-xdist ;for 'pytest -n'
python-setuptools
python-setuptools-scm
python-wheel))
python-setuptools-scm))
(propagated-inputs
(list python-cartopy
python-cf-units
python-cftime
python-dask
;; python-geovista ; optinoal, not packaged yet
;; python-geovista ; optional, not packaged yet
python-matplotlib
python-netcdf4
python-numpy