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gnu: r-rcas: Replace custom phase with SKIPPED-TESTS argument.

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* gnu/packages/bioconductor.scm (r-rcas)[arguments]: Remove phase
'skip-bad-tests; specify #:skipped-tests instead.

Change-Id: Ib4497fa70e0b61267b61d4fdf70e3e5abd0c1af9
This commit is contained in:
Ricardo Wurmus
2026-04-03 21:48:03 +02:00
parent 1faabeb0fc
commit 967f30f154
1 changed files with 9 additions and 10 deletions
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19
gnu/packages/bioconductor.scm
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@@ -12832,19 +12832,18 @@ the graph algorithms contained in the Boost library.")
(build-system r-build-system)
(arguments
(list
#:skipped-tests
;; Code running outside testthat accesses the Internet
'("test_motif.R"
;; These tests attempt to download data.
("test_database_functions.R"
"Testing createDB function")
("test_report.R"
"Testing runReport function"))
#:phases
'(modify-phases %standard-phases
(add-after 'unpack 'set-HOME
(lambda _ (setenv "HOME" "/tmp")))
(add-after 'unpack 'skip-bad-tests
(lambda _
;; These tests need Internet access.
(with-directory-excursion "tests/testthat"
(substitute* "test_database_functions.R"
((".*Testing createDB function.*" m)
(string-append m "skip('guix')\n")))
(delete-file "test_report.R")
(delete-file "test_motif.R")))))))
(lambda _ (setenv "HOME" "/tmp"))))))
(inputs (list pandoc))
(propagated-inputs
(list r-biocgenerics