From b77880875b0a2190a65dfce7a39e6ac4f3f3c385 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Sat, 4 Apr 2026 23:57:50 +0200
Subject: [PATCH] gnu: r-chippeakanno: Replace custom phase with SKIPPED-TESTS
 argument.

* gnu/packages/bioconductor.scm (r-chippeakanno)[arguments]: Remove phase
'disable-bad-tests; specify #:skipped-tests instead.

Change-Id: Id7e7cd02d1b0b02f62022b9d55e69c867200e213
---
 gnu/packages/bioconductor.scm | 14 +++++---------
 1 file changed, 5 insertions(+), 9 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 4771cf039d..266fe274f7 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -16342,15 +16342,11 @@ determining dependencies between variables, code improvement suggestions.")
     (build-system r-build-system)
     (arguments
      (list
-      #:phases
-      '(modify-phases %standard-phases
-         (add-after 'unpack 'disable-bad-tests
-           (lambda _
-             ;; "sequence MT not found", but it's probably because it tries to
-             ;; access the Internet earlier
-             (substitute* "tests/testthat/test_getAllPeakSequence.R"
-               ((".*getAllPeakSequence works not correct.*" m)
-                (string-append m "skip('guix')\n"))))))))
+      #:skipped-tests
+      ;; "sequence MT not found", but it's probably because it tries to access
+      ;; the Internet earlier
+      '(("test_getAllPeakSequence.R"
+         "getAllPeakSequence works not correct"))))
     (propagated-inputs
      (list r-annotationdbi
            r-biocgenerics