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gnu: spglib: Update to 2.5.0.

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* gnu/packages/chemistry.scm (spglib): Update to 2.5.0.
[arguments]<#:tests?, #:test-target, #:configure-flags>: Disable tests.
<#:phases>: Adapt.

Change-Id: Ia05bb8e2f012fcf4c576db8a6e5d2f8b153493ff
Signed-off-by: Andreas Enge <andreas@enge.fr>
This commit is contained in:
Jakob Kirsch
2025-04-11 15:33:14 +02:00
committed by Andreas Enge
parent d693603549
commit c04bb04a39
1 changed files with 33 additions and 18 deletions
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51
gnu/packages/chemistry.scm
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@@ -477,7 +477,7 @@ materials, biochemistry, or related areas.")
(define-public spglib
(package
(name "spglib")
(version "1.16.0")
(version "2.5.0")
(source
(origin
(method git-fetch)
@@ -485,26 +485,41 @@ materials, biochemistry, or related areas.")
(url "https://github.com/spglib/spglib")
(commit (string-append "v" version))))
(sha256
(base32 "1kzc956m1pnazhz52vspqridlw72wd8x5l3dsilpdxl491aa2nws"))
(base32 "0x5igrqwx7r2shysmi9sqcjg4hpb7hba3ddlwg05z6c57a3ifbqc"))
(file-name (git-file-name name version))))
(build-system cmake-build-system)
(arguments
'(#:test-target "check"
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'patch-header-install-dir
(lambda _
;; As of the writing of this package, CMake and GNU build systems
;; install the header to two different location. This patch makes
;; the CMake build system's choice of header directory compatible
;; with the GNU build system's choice and with what avogadrolibs
;; expects.
;; See https://github.com/spglib/spglib/issues/75 and the relevant
;; part of https://github.com/OpenChemistry/avogadroapp/issues/97.
(substitute* "CMakeLists.txt"
(("\\$\\{CMAKE_INSTALL_INCLUDEDIR\\}" include-dir)
(string-append include-dir "/spglib")))
#t)))))
'(#:tests? #f ; tests want to clone a git repository, which won't work
#:configure-flags '("-DSPGLIB_WITH_TESTS=OFF")
#:phases (modify-phases %standard-phases
(add-before 'configure 'patch-files (lambda _ (substitute* "CMakeLists.txt"
(("include\\(cmake/DynamicVersion.cmake\\)")
"")
(("dynamic_version.*")
"")
(("PROJECT_PREFIX.*")
"")
(("FALLBACK_VERSION.*")
"set (PROJECT_VERSION 2.5.0")
(("\\$\\{PROJECT_VERSION_FULL\\}")
"2.5.0")
(("\\$\\{GIT_COMMIT\\}")
"\"\""))
(substitute* "src/CMakeLists.txt"
((".*Spglib_GitHash.*")
""))))
(add-after 'unpack 'patch-header-install-dir
(lambda _
;; As of the writing of this package, CMake and GNU build systems
;; install the header to two different location. This patch makes
;; the CMake build system's choice of header directory compatible
;; with the GNU build system's choice and with what avogadrolibs
;; expects.
;; See https://github.com/spglib/spglib/issues/75 and the relevant
;; part of https://github.com/OpenChemistry/avogadroapp/issues/97.
(substitute* "CMakeLists.txt"
(("\\$\\{CMAKE_INSTALL_INCLUDEDIR\\}" include-dir)
(string-append include-dir "/spglib"))))))))
(home-page "https://spglib.github.io/spglib/index.html")
(synopsis "Library for crystal symmetry search")
(description "Spglib is a library for finding and handling crystal