From e36dc2ae2a0ad8d8fe2e240d4793de85d88a0be8 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Sun, 8 Mar 2026 18:28:37 +0100
Subject: [PATCH] gnu: r-microbiomestat: Update to 1.4.

* gnu/packages/bioconductor.scm (r-microbiomestat): Update to 1.4.
[propagated-inputs]: Remove r-bbmisc, r-lhs, r-mlr, r-mlrmbo, r-paramhelpers, and
r-smoof; add r-bbotk, r-mlr3, r-mlr3mbo, and r-paradox.

Change-Id: Idc8342d33e47af8a4f9b0d104bce410dfca9417d
---
 gnu/packages/bioconductor.scm | 14 ++++++--------
 1 file changed, 6 insertions(+), 8 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ddcb210855..f9df518a0f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -18703,13 +18703,13 @@ standardization of the analyses and the development of best practices.")
 (define-public r-microbiomestat
   (package
     (name "r-microbiomestat")
-    (version "1.3")
+    (version "1.4")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "MicrobiomeStat" version))
               (sha256
                (base32
-                "02xg8l4d0z5wrdrm5dj5a0q51vsbhf3f6z2lk8294c4d85s09dhl"))))
+                "0in28lzds3sv1xa25vs8q5mmm1ax78s2axhq7mi23njqip5xmsr1"))))
     (properties
      '((upstream-name . "MicrobiomeStat")
        (updater-extra-inputs . ("nlopt"))
@@ -18717,23 +18717,21 @@ standardization of the analyses and the development of best practices.")
     (build-system r-build-system)
     (inputs (list nlopt))
     (native-inputs (list pkg-config))
-    (propagated-inputs (list r-bbmisc
+    (propagated-inputs (list r-bbotk
                              r-dplyr
                              r-foreach
                              r-ggplot2
                              r-ggrepel
-                             r-lhs
                              r-lmertest
                              r-mass
                              r-matrix
                              r-matrixstats
-                             r-mlr
-                             r-mlrmbo
+                             r-mlr3
+                             r-mlr3mbo
                              r-modeest
-                             r-paramhelpers
+                             r-paradox
                              r-rcpp
                              r-rcpparmadillo
-                             r-smoof
                              r-statmod))
     (home-page "https://cran.r-project.org/package=MicrobiomeStat")
     (synopsis "Statistical methods for microbiome compositional data")