diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 163859388c3..a9dc41d1ac9 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -29593,7 +29593,7 @@ N-dimensional arrays for Python.") (define-public python-anndata (package (name "python-anndata") - (version "0.10.7") + (version "0.11.1") (source (origin ;; The tarball from PyPi doesn't include tests. @@ -29604,24 +29604,18 @@ N-dimensional arrays for Python.") (file-name (git-file-name name version)) (sha256 (base32 - "1i08rm1xnsnq12rjv4virgdx61bra1gsfagjdq0kcpz8npxqa0as")))) + "0skmjjvxk5gdsx6fkplszff92jsb4l45j23c6mhq1vdi3wqhqhcw")))) (build-system pyproject-build-system) (arguments (list #:test-flags - '(list "-k" (string-append "not concatenation.rst" - ;; fixture 'mocker' not found - " and not test_consecutive_bool")) + ;; This one test seemingly freezes + '(list "-k" "not test_read_lazy_h5_cluster") #:phases #~(modify-phases %standard-phases ;; Doctests require scanpy from (gnu packages bioinformatics) (add-after 'unpack 'disable-doctests (lambda _ - (substitute* "conftest.py" - (("import pytest") - (string-append "import pytest\nimport _pytest\n")) - (("pytest.DoctestItem") - "_pytest.doctest.DoctestItem")) (substitute* "pyproject.toml" (("--doctest-modules") "")))) (add-before 'build 'set-version @@ -29657,6 +29651,7 @@ N-dimensional arrays for Python.") python-loompy python-matplotlib python-pytest + python-pytest-mock python-pytest-doctestplus python-pytest-xdist python-toml