From eaab307c5c4b10a3fa684ffee933de4b44fa82dd Mon Sep 17 00:00:00 2001
From: Laurent Gatto <lgatto@protonmail.ch>
Date: Mon, 2 Mar 2026 08:49:32 +0100
Subject: [PATCH] gnu: Add r-msdatahub.

* gnu/packages/bioconductor.scm (r-msdatahub): New variable.

Change-Id: I63977e3c950b122c014108683e84aefa51972064
---
 gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 434437dc7c..773f871521 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -11868,6 +11868,35 @@ package thus provides an alternative MS data representation for very large or
 remote MS data sets.")
     (license license:artistic2.0)))
 
+(define-public r-msdatahub
+  (package
+    (name "r-msdatahub")
+    (version "1.10.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "MsDataHub" version))
+       (sha256
+        (base32 "09rfj583b1vz3p328pnlrzj7mxg6804ia1q84p9y5pvzcb0z17fv"))))
+    (properties `((upstream-name . "MsDataHub")))
+    (build-system r-build-system)
+    (arguments
+     (list
+      #:phases '(modify-phases %standard-phases
+                  (add-after 'unpack 'set-HOME
+                    (lambda _
+                      (setenv "HOME" "/tmp"))))))
+    (propagated-inputs (list r-experimenthub))
+    (native-inputs (list r-knitr r-testthat))
+    (home-page "https://rformassspectrometry.github.io/MsDataHub")
+    (synopsis "Mass spectrometry data on ExperimentHub")
+    (description
+     "The @code{MsDataHub} package uses the @code{ExperimentHub}
+infrastructure to distribute raw mass spectrometry data files, peptide
+spectrum matches or quantitative data from proteomics and metabolomics
+experiments.")
+    (license license:artistic2.0)))
+
 (define-public r-msexperiment
   (package
     (name "r-msexperiment")