From ed4dba483ad6f8a4fbaafa3919f66435dd5b169f Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 31 Mar 2026 20:44:25 +0200 Subject: [PATCH] gnu: r-ballgown: Remove obsolete build phase. * gnu/packages/bioconductor.scm (r-ballgown)[arguments]: Remove phase 'testthat-compatibility. Change-Id: I8e07774d6e3580356fab6d690935d22f1fa6b761 --- gnu/packages/bioconductor.scm | 10 ---------- 1 file changed, 10 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 48395c0677..1060f8995e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -27685,16 +27685,6 @@ visualizations for publication-quality multi-panel figures.") "1c7vy10ga3cswsqwxljbgqlsjg0d2lx9srfknbjy4fkbyrjci15k")))) (properties `((upstream-name . "ballgown"))) (build-system r-build-system) - (arguments - (list - #:phases - '(modify-phases %standard-phases - ;; These deprecated procedures have been removed in testthat. - (add-after 'unpack 'testthat-compatibility - (lambda _ - (substitute* "tests/testthat/test-annotation.R" - (("is_true\\(\\)") "expect_true") - (("is_false\\(\\)") "expect_false"))))))) (propagated-inputs (list r-biobase r-genomicranges