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576 Commits

Author SHA1 Message Date
Maxim Cournoyer
18caf48414 gnu: gnome-maps: Update to 50.0. 
* gnu/packages/geo.scm (gnome-maps): Update to 50.0.
[native-inputs]: Add blueprint-compiler.

Change-Id: I930fa0204aaea8c0ac1019e2462edfe556403876
 2026-03-28 16:26:12 +09:00
Vinicius Monego
be3586cd69 gnu: python-obspy: Update to 1.5.0. 
* gnu/packages/geo.scm (python-obspy): Update to 1.5.0.
[native-inputs]: Remove python-wheel.

Change-Id: Idd38328b6e9e0d5ac62cd80463a14f68ba62463f
 2026-03-22 13:05:34 -03:00
Ludovic Courtès
1ae20f03f4 gnu: Reference the inherited inputs values. 
This commit was made by running this command:

  sed -e's/modify-inputs (package-\([a-z-]*\)inputs [a-zA-Z0-9-]\+)/modify-inputs \1inputs/g' -i gnu/packages/*.scm

… and then reverting individual hunks where the change would trigger unbound
variable warnings or other issues (such as ‘native-inputs’ is bound in the
body of the ‘inputs’ field, but it refers to the ‘native-inputs’ thunk defined
just above).

Change-Id: I6d94819f2809313fa1fbefc61897502ee7d66fab
 2026-03-20 13:27:16 +01:00
Ludovic Courtès
2a50c9598b gnu: Reference the inherited ‘arguments’ value. 
This commit was made by running this command:

  sed -e's/substitute-keyword-arguments (package-arguments [a-zA-Z0-9-]\+)/substitute-keyword-arguments arguments/g' -i gnu/packages/*.scm

… and then:

  1. reverting changes from ‘gnu/packages/rust.scm’ and
     ‘gnu/packages/java.scm’ since they would incur derivation changes and/or
     breakage;
  2. reverting the change for ‘gcc-final’ in ‘gnu/packages/commencement.scm’;
  3. reverting the change for ‘onnx-optimizer’, ‘openquest’, and ‘certbot’,
     which use ‘substitute-keyword-arguments’ for arguments that are not
     inherited (and thus ‘arguments’ would be unbound);
  4. reverting the change for ‘insight-toolkit-legacy’ and ‘wine64-staging’
     which make bogus assumptions about inherited arguments.

Change-Id: I122a7cf517b6b63cae38944b5d33ade4b1f5a89c
 2026-03-20 13:27:15 +01:00
Mattia Bunel
9349e9c572 gnu: pdal: Update to 2.10.0. 
* gnu/packages/geo.scm (pdal): Update to 2.10.0.
[arguments]<#:test-exclude>: Skip more tests.

Change-Id: I17073886d1cb027ce5c9735d54c07e8c3545c9db
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2026-03-19 18:15:39 +01:00
Julien Lepiller
a3639658c7 gnu: josm: Update to 19539. 
* gnu/packages/geo.scm (josm): Update to 19539.

Change-Id: Idd5cdd76962d4377351915cf09b2cd6fab86b347
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2026-03-18 18:50:21 +01:00
Andreas Enge
2a26fb6a7f gnu: Remove memphis. 
* gnu/packages/geo.scm (memphis): Delete variable.

Change-Id: Id2d2292d9b0d6660c62fba6c8f041e3e6a1d7776
 2026-03-17 16:40:22 +01:00
Maxim Cournoyer
720a7e91af gnu: gnome-maps: Update to 49.4. 
* gnu/packages/geo.scm (gnome-maps): Update to 49.4.
[#:phases] {wrap}: Simplify wrapper.  Previous strategy now caused GI errors
like "cannot register existing type 'GIRepository'".
[inputs]: Add bash-minimal.  Replace webkitgtk-for-gtk3 with webkitgtk.

Change-Id: I6ddad3e5232c3301c2cc8000d6e0516f48c4c53e
 2026-03-12 16:23:36 +09:00
Maxim Cournoyer
ba58c7e2f1 gnu: gnome-maps: Update to 49.3. 
* gnu/packages/geo.scm (gnome-maps): Update to 49.3.
[inputs]: Remove gfbgraph.
 2026-03-06 14:53:13 +01:00
Liliana Marie Prikler
cb6be79550 gnu: librest: Update to 0.10.2. 
* gnu/packages/gnome.scm (rest): Deprecate in favor of and rename to…
(librest): … this.
Update to 0.10.2.
[build-system]: Switch to meson-build-system.
[arguments]: Convert to list of G-Expressions.
<#:configure-flags>: Adjust accordingly.
[native-inputs]: Add gi-docgen.
[inputs]: Replace libsoup-minimal-2 with libsoup.  Ad json-glib.
(gnome-recipes, gnome-online-miners, gnome-initial-setup)
(libzapojit, endeavour, gfbgraph)[inputs]: Replace rest with librest.
(msgraph)[inputs]: Replace rest-next with librest.
(gnome-online-accounts-3.44)[inputs]: Don't replace librest.
* gnu/packages/geo.scm (gnome-maps): Replace rest-next with librest.
* gnu/packages/gtk.scm (gtk+, gtk): Replace rest with librest.
 2026-03-06 14:52:05 +01:00
Gabriel Wicki
f86ff1db98 gnu: Pin old pybind11 version. 
* gnu/packages/python-xyz.scm (pybind11): Move definition to (pybind11-2).
(python-awkward-cpp, python-contourpy, python-hnswlib, python-dm-tree,
python-matplotlib, python-pikepdf, python-optree, python-fusepy): Change
reference to pybind11-2.

* gnu/packages/astronomy.scm (aoflagger, python-galsim, python-pyclp),
  gnu/packages/bioinformatics.scm (python-metacells, python-strawc,
  python-coolbox, python-pyspoa, python-scvelo),
  gnu/packages/chemistry.scm (avogadrolibs),
  gnu/packages/computer-architecture.scm (gem5),
  gnu/packages/duckdb.scm (python-duckdb),
  gnu/packages/electronics.scm (nextpnr, prjtrellis),
  gnu/packages/engineering.scm (python-orocos-kinematics-dynamics),
  gnu/packages/geo.scm (ogs-serial),
  gnu/packages/graphics.scm (openshadinglanguage, openimageio),
  gnu/packages/image-processing.scm (opencolorio),
  gnu/packages/machine-learning.scm (python-fasttext, python-ml-dtypes, onnx,
  onnx-optimizer, onnxruntime, dlib, tensorflow-lite, tensorpipe,
  python-pytorch, python-torchvision, python-ctranslate2, python-hmmlearn,
  python-dlib),
  gnu/packages/maths.scm (python-accupy, python-ducc0),
  gnu/packages/networking.scm (libcamera),
  gnu/packages/opencl.scm (python-pyopencl),
  gnu/packages/package-management.scm (python-libmambapy),
  gnu/packages/physics.scm (python-brille, python-gofit),
  gnu/packages/python-check.scm (python-xdoctest),
  gnu/packages/python-science.scm (pyre, python-boost-histogram, python-cvxpy,
  python-iminuit, python-osqp, python-pyamg, python-qdldl,
  python-scikit-build-core, python-scipy, python-vaex-core, python-pyfma),
  gnu/packages/radio.scm (gnuradio, gr-osmosdr, gr-dsd, gr-iqbal,
  gr-satellites, limesuite-ng),
  gnu/packages/simulation.scm (fenics, python-dolfin-adjoint),
  gnu/packages/statistics.scm (python-diptest, python-george),
  gnu/packages/syndication.scm (syndication-domination): Change reference to pybind11-2.

Change-Id: Ib6abc8580fc2b4c35172f251ff6ba7d80ced4b7b
Signed-off-by: Gabriel Wicki <gabriel@erlikon.ch>
 2026-03-05 15:53:36 +01:00
Andreas Enge
0c748bee76 gnu: libspatialindex: Update to 2.0.0 and enable tests. 
* gnu/packages/geo.scm (libspatialindex): Update to 2.0.0.
[arguments]: Remove field.

Change-Id: I668231e82c889c1ff1ac7f9da3bb0d51a8618596
 2026-03-04 13:51:53 +01:00
Vinicius Monego
5cea762070 gnu: libmseed: Update to 3.2.4. 
* gnu/packages/geo.scm (libmseed): Update to 3.2.4.

Change-Id: I5ca19290aa22634201df1ad81b8f7fc5877139b9
 2026-03-01 23:38:55 -03:00
Efraim Flashner
adc011e185 gnu: Fix some spelling errors. 
* gnu/packages/admin.scm, gnu/packages/containers.scm,
gnu/packages/geo.scm, gnu/packages/monitoring.scm,
gnu/packages/networking.scm, gnu/packages/sdl.scm,
gnu/packages/shellutils.scm, gnu/packages/specifications.scm,
gnu/packages/sssd.scm, gnu/packages/statistics.scm,
gnu/packages/tcl.scm, gnu/packages/telephony.scm, gnu/packages/tex.scm,
gnu/packages/text-editors.scm, gnu/packages/textutils.scm,
gnu/packages/tor-browsers.scm: Fix some spelling errors.

Change-Id: Idefb46cfe06869670c7f3b5229c8a39ac17392db
 2026-03-01 15:55:07 +02:00
Sharlatan Hellseher
5f3cd42859 gnu: Deprecate swig and swig-next in vafor of swig-4.0 and swig-4.4. 
This is a following up change after discussion in
<https://codeberg.org/guix/guix/pulls/3701#issuecomment-11048648>.

* gnu/packages/swig.scm (swig-4.0, swig-4.4): New variables.
(swig, swig-next): Deprecate swig and swig-next in vafor of swig-4.0 and
swig-4.4.

* gnu/packages/accessibility.scm (libbraille)
* gnu/packages/apparmor.scm (libapparmor)
* gnu/packages/bioinformatics.scm (htseq, imp, libsbml)
* gnu/packages/bootloaders.scm (dtc, u-boot)
* gnu/packages/disk.scm (volume-key)
* gnu/packages/dns.scm (ldns, unbound)
* gnu/packages/electronics.scm (opensta, trilinos-serial-xyce, uhdm)
* gnu/packages/embedded.scm (python-libmpsse)
* gnu/packages/engineering.scm (freecad, kicad, meep, mpb)
* gnu/packages/fabric-management.scm (ibutils)
* gnu/packages/game-development.scm (python-pybox2d)
* gnu/packages/games.scm (kiki)
* gnu/packages/geo.scm (saga)
* gnu/packages/gnome.scm (libratbag)
* gnu/packages/gnucash.scm (gnucash)
* gnu/packages/gnupg.scm (python-gpg)
* gnu/packages/graphviz.scm (graphviz)
* gnu/packages/guile-xyz.scm (guile-xapian)
* gnu/packages/image.scm (mypaint)
* gnu/packages/instrumentation.scm (babeltrace, lttng-tools)
* gnu/packages/kodi.scm (kodi)
* gnu/packages/libftdi.scm (libftdi)
* gnu/packages/linux.scm (libnl)
* gnu/packages/llvm.scm (lldb)
* gnu/packages/machine-learning.scm (openmm, tensorflow-lite)
* gnu/packages/maths.scm (nlopt)
* gnu/packages/ncurses.scm (stfl)
* gnu/packages/oneapi.scm (python-onetbb)
* gnu/packages/pretty-print.scm (highlight)
* gnu/packages/python-crypto.scm (python-m2crypto)
* gnu/packages/python-graphics.scm (python-pivy)
* gnu/packages/radio.scm (hamlib, soapysdr)
* gnu/packages/security-token.scm (python-pyscard, python-yubikey-manager)
* gnu/packages/selinux.scm (libselinux, libsemanage, python-setools)
* gnu/packages/speech.scm (pocketsphinx)
* gnu/packages/statistics.scm (python-openturns, r-spams)
* gnu/packages/tbb.scm (python-tbb)
* gnu/packages/version-control.scm (subversion)
* gnu/packages/video.scm (libopenshot, mlt, obs)
[native-inputs]: Remove swig; add swig-4.0.

* gnu/packages/geo.scm (gdal)
* gnu/packages/graph.scm (python-faiss)
[inputs]: Remove swig; add swig-4.0.

* gnu/packages/games.scm (fifengine): Update to 0.4.2.
[inputs]: Remove swig; add swig-4.0.
[native-inputs]: Likewise.

* gnu/packages/image-processing.scm (insight-toolkit, simpleitk)
* gnu/packages/pdf.scm (mupdf, python-pymupdf)
[native-inputs]: Remove swig-next; add swig-4.4.

Change-Id: I544bef0a0b1a81004596fad9f116610ef5cb52ae
 2026-02-27 14:07:00 +00:00
Sharlatan Hellseher
7d7f36036b gnu: tegola: Unbundle more inputs. 
* gnu/packages/geo.scm (tegola): Update to 0.21.2.
[source]: Delete move availale vendor sources.
[arguments]: Use G-expressions.
[inputs]: Remove go-github-com-aws-aws-lambda-go,
go-github-com-beorn7-perks, go-github-com-gofrs-uuid,
go-github-com-google-go-cmp, go-github-com-google-uuid,
go-github-com-jmespath-go-jmespath, go-golang-org-x-crypto,
go-golang-org-x-sys, go-golang-org-x-text, go-golang-org-x-tools,
go-google-golang-org-protobuf, go-go-uber-org-atomic, and
go-go-uber-org-multierr; add go-github-com-ajstarks-svgo,
go-github-com-akrylysov-algnhsa, go-github-com-dimfeld-httptreemux,
go-github-com-gdey-tbltest, go-github-com-go-spatial-proj,
go-github-com-jackc-pgproto3-v2, go-github-com-jackc-pgtype,
go-github-com-jackc-pgx-v4, go-github-com-mattn-goveralls,
go-github-com-pborman-uuid, go-github-com-prometheus-client-golang,
go-github-com-redis-go-redis-v9, go-github-com-sap-go-hdb,
go-github-com-golang-groupcache, and go-golang-org-x-xerrors.

Change-Id: If4320187a0c0d6dcd590ef007065cc7b7f27a4f2

gnu: (gnu packages geo): Update.

* gnu/packages/geo.scm ((gnu packages geo)): Update.

Change-Id: I91c519b0e959bc5cb1cd6831e3a1e182bf53d107
 2026-02-24 23:26:37 +00:00
Arun Isaac
0f03583230 gnu: mapnik: Update to 4.2.1-0.cb1e226. 
* gnu/packages/geo.scm (mapnik): Update to 4.2.1-0.cb1e226.
[build-system]: Switch to cmake-build-system.
[arguments]: Remove #:cmake. Add -DBUILD_DEMO_VIEWER=OFF and
-DBUILD_DEMO_CPP=OFF to #:configure-flags.
[inputs]: Add libavif and openssl.
 2026-02-21 23:53:04 +00:00
Arun Isaac
e872566b57 gnu: mapnik: Skip ogr test using #:test-exclude. 
* gnu/packages/geo.scm (mapnik)[arguments]: Skip ogr test using #:test-exclude
rather than a custom phase.
 2026-02-21 23:53:04 +00:00
Arun Isaac
2ce4c45f86 gnu: proj: Update to 9.7.1. 
* gnu/packages/geo.scm (proj): Update to 9.7.1.
(proj-9.3): New variable.
(gdal, python-pyproj, qgis)[inputs]: Replace proj with proj-9.3.
* gnu/packages/cran.scm (r-sf, r-terra)[inputs]: Replace proj with proj-9.3.
* gnu/packages/image-processing.scm (vtk)[inputs]: Replace proj with
proj-9.3.
 2026-02-21 23:53:04 +00:00
Hugo Buddelmeijer
a450d2548a gnu: tippecanoe: Fix build by updating to 2.79.0. 
* gnu/packages/geo.scm (tippecanoe): Update to 2.79.0.
[arguments]: Switch to gexps.
<#:test-target, #:tests?>: Disable for now.
<#:phases>: Add 'patch-bash phase.

Merges: https://codeberg.org/guix/guix/pulls/6467
Change-Id: I90f0336f03a6d136ce00c7a44268820c9d3d8880
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-16 23:28:46 +00:00
Nguyễn Gia Phong
3694267e23 gnu: java-antlr4-runtime-python: Rename to python-antlr4-runtime. 
* gnu/packages/java.scm (python-antlr4-runtime):
  Rename from java-antlr4-runtime-python.
  [outputs]: Fall back to default.
  (java-antlr4-runtime-python):
  Deprecate in favor of python-antlr4-runtime.
* gnu/packages/geo.scm (python-cf-units)[propagated-inputs]:
  Replace java-antlr4-runtime-python with python-antlr4-runtime.
* gnu/packages/python-xyz.scm (python-moto)[propagated-inputs],
  (python-omegaconf)[propagated-inputs]:
  Replace java-antlr4-runtime-python with python-antlr4-runtime.

Change-Id: Ia679b1d0402236650aa92cbcbd7bc6f03ffbcda1
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2026-02-16 19:23:32 +01:00
Lars Bilke
4b5932da6d gnu: ogs-serial: Use vtk instead of vtk-9.3. 
* gnu/packages/geo.scm (ogs-serial)[source]: Add patch.
* gnu/packages/patches/ogs-6.5.7-netcdfconverter.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patch.

Change-Id: I1301a2d77e2e30317c96947d3d37324df7489718
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2026-02-16 17:05:26 +01:00
Nicolas Graves
79e2e4cecd gnu: gdal: Fix build on python-3.12. 
* gnu/packages/geo.scm (gdal)[native-inputs]: Add python-setuptools.

Change-Id: I85f8d469debc077e6ffe3568132e1bef7bbcf23d
Reviewed-by: Hugo Buddelmeijer <hugo@buddelmeijer.nl>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-15 21:50:04 +00:00
Andreas Enge
392758659e gnu: ogs-serial: Update to 6.5.7. 
* gnu/packages/geo.scm (ogs-serial): Update to 6.5.7.

Change-Id: I599ffd4de6dead138ff028806cbdd36e003ceb3d
 2026-02-15 14:30:08 +01:00
Sharlatan Hellseher
4bd66f8b88 gnu: tegola: Fix build. 
* gnu/packages/geo.scm (tegola)[inputs]: Add go-github-com-google-go-cmp.

Change-Id: If25d2f65e1c4b897c07ca517df11ac9e8186b122
 2026-02-15 14:17:46 +01:00
Andreas Enge
03c73b3995 gnu: vtk: Update to 9.4.2 and add vtk-9.3. 
* gnu/packages/image-processing.scm (vtk): Update to 9.4.2.
[origin]: Adapt snippet.
(vtk-9.3): Add back the previous version.
(opencv)[inputs],
* gnu/packages/geo.scm (ogs-serial)[inputs],
* gnu/packages/python-science.scm (python-pyvista)[inputs]: Replace vtk
by vtk-9.3.

Change-Id: I1a567bc30c7845fdd647db0f93cef2cafe1ced76
 2026-02-13 11:46:52 +01:00
Andreas Enge
79b90ada7a gnu: python-rtree: Update to 1.4.1. 
* gnu/packages/geo.scm (python-rtree): Update to 1.4.1.

Change-Id: Ia4ef71f518e3b8ab24a2bf8b74a1172b687b8552
 2026-02-07 16:53:09 +01:00
Nicolas Graves
56a1951da0 gnu: python-scitools-iris: Update to 3.14.1. 
* gnu/packages/geo.scm (python-scitools-iris): Update to 3.14.1.
[arguments]<#:test-flags>: Refresh them.
<#:phases>: Remove phase 'relax-requirements.  Refresh phase
'fix-paths.  Replace phase 'pre-check addition by the phase 'check
replacement.
[native-inputs]: Add python-affine, python-rasterio,
python-scitools-mo-pack.

Change-Id: Ie2fef55d61266758106c3797217da72927279c90
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:58 +01:00
Nicolas Graves
78af90c974 gnu: Add iris-test-data. 
* gnu/packages/geo.scm (iris-test-data): New variable.

Change-Id: Ib9a0b1d09a06d9372272fd7d0c7862533d7b4b84
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:58 +01:00
Nicolas Graves
215cdb12d0 gnu: Add python-scitools-mo-pack. 
* gnu/packages/geo.scm (python-scitools-mo-pack): New variable.

Change-Id: I3a03acd4fbbccc69a72373c7e34e6d23f7fd9426
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:58 +01:00
Nicolas Graves
79cffdc00f gnu: Add libmo-unpack. 
* gnu/packages/geo.scm (libmo-unpack): New variable.

Change-Id: I7f157a0949e4022b7ad20635119e906ab005fb0f
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:58 +01:00
Nicolas Graves
a273b090b1 gnu: gdal: Switch to pyproject. 
* gnu/packages/geo.scm (gdal):
[arguments]<#:imported-modules, #:modules>: Switch to
pyproject-build-system.
<#:phases>: Improve phase 'swap-files, use site-packages.

Change-Id: Ie24b7c787a16d18c3b93f6bb10dd09095205562f
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:54 +01:00
Nicolas Graves
1bf91ac505 gnu: Drop setting SETUPTOOLS_SCM_PRETEND_VERSION in some packages. 
* gnu/packages/astronomy.scm (python-asdf-compression)
(python-asdf-fits-schemas, python-cdflib, python-sunkit-spex):
* gnu/packages/bioinformatics.scm (python-whatshap, python-mudata)
(python-pyfaidx, python-ctxcore, scvelo):
* gnu/packages/bootloaders.scm (dtc):
* gnu/packages/check.scm (python-pytest-xdist, python-pytest-forked):
* gnu/packages/databases.scm (python-fastparquet):
* gnu/packages/disk.scm (greaseweazle-host-tools):
* gnu/packages/docker.scm (python-docker):
* gnu/packages/finance.scm (python-ledgerblue):
* gnu/packages/fontutils.scm (python-compreffor)
(python-defcon-bootstrap, nototools):
* gnu/packages/games.scm (sc-controller):
* gnu/packages/machine-learning.scm (python-botorch):
* gnu/packages/music.scm (python-pylast):
* gnu/packages/package-management.scm (conda):
* gnu/packages/python-build.scm (python-exceptiongroup):
* gnu/packages/python-science.scm (python-dask-image)
(python-distributed, python-osqp):
* gnu/packages/python-web.scm (python-branca, python-smart-open):
* gnu/packages/python-xyz.scm (python-conda-content-trust)
(python-menuinst, python-isort, python-pyclibrary)
(python-pyclipper, python-csb43-0.10, python-orgparse)
(python-deepmerge, python-scooby, python-uuid6):
* gnu/packages/radio.scm (nanovna-saver):
* gnu/packages/sphinx.scm (python-sphinx-autodoc-typehints):
[arguments]: Remove phases setting SETUPTOOLS_SCM_PRETEND_VERSION.

* gnu/packages/python-xyz.scm (python-bagit)
[arguments]: Refactor manual 'check phase into #:test-flags.

Change-Id: I0713d6603f982a7f956d02fc3b85a384f4dd6ce4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:37 +01:00
Sughosha
02b5ed3d6c gnu: osmctools: Wrap osmupdate with wget. 
* gnu/packages/geo.scm (osmctools)[arguments]<#:phases>: Add wrap phase.
[inputs]: Add wget.

Change-Id: If4c9a0c6440921fd7c509df028b970530d16363b
 2026-01-30 20:53:24 +05:30
Sharlatan Hellseher
b6666118f5 gnu: python-metpy: Update to 1.7.1. 
* gnu/packages/geo.scm (python-metpy): Update to 1.7.1.

Change-Id: I93c3600f1549d70c18acdb0b8652ffc3fbe7642c
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:57 +01:00
Sharlatan Hellseher
1cc6355303 gnu: python-verde: Update to 1.8.1. 
* gnu/packages/geo.scm (python-verde): Update to 1.8.1.
[arguments] <test-flag>: Skip one more test.
[propagated-inputs]: Add python-pykdtree and python-numba.
[native-inputs]: Remove python-wheel; add python-matplotlib and
python-pytest-mpl.

Change-Id: Iaeefd5f40cb553fd0c76556663279f75aa7917ad
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:20:16 +01:00
Nguyễn Gia Phong
625ed9311c Update Nguyễn Gia Phong's new email address. 
* .mailmap: New entry.

Change-Id: I839ba6c7be463c5b59c7e68247ae5e46d2ceeeaf
Reviewed-by: Maxim Cournoyer <maxim@guixotic.coop>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-12-18 17:16:43 +00:00
Greg Hogan
1aebfc74f1 gnu: boost: Update to 1.89.0. 
* gnu/packages/boost.scm (boost-for-source-highlight): Rename this ...
(boost-1.83): ... to this.
(boost-numpy): Inherit from boost-1.83.
* gnu/packages/pretty-print.scm (source-highlight): Update accordingly.

* gnu/packages/boost.scm (boost): Update to 1.89.0.
[source]: Remove patches.

* gnu/packages/boost.scm (mdds)
[propagated-inputs]: Replace boost with boost-1.83.

* gnu/packages/astronomy.scm (aoflagger),
* gnu/packages/embedded.scm (cc-tool),
* gnu/packages/games.scm (0ad, vcmi),
* gnu/packages/image.scm (gpick),
* gnu/packages/maths.scm (highfive),
* gnu/packages/plotutils.scm (asymptote)
[native-inputs]: Replace boost with boost-1.83.

* gnu/packages/audio.scm (guitarix, supercollider),
* gnu/packages/bioconductor.scm (r-mzr),
* gnu/packages/bioinformatics.scm (ataqv, bless, express, isolator,
metabat, r-velocytom, rsem, sailfish, salmon),
* gnu/packages/bittorrent.scm (libtorrent-rasterbar),
* gnu/packages/code.scm (sourcetrail),
* gnu/packages/compression.scm (innoextract),
* gnu/packages/cpp.scm (lager),
* gnu/packages/crypto.scm (cryfs),
* gnu/packages/electronics.scm (nextpnr, prjpeppercorn, prjtrellis,
pulseview),
* gnu/packages/emulators.scm (mupen64plus-video-glide64mk2),
* gnu/packages/engineering.scm (cadabra2, freecad, libigl,
openscad, prusa-slicer),
* gnu/packages/file-systems.scm (snapper),
* gnu/packages/finance.scm (ledger),
* gnu/packages/game-development.scm (dds),
* gnu/packages/games.scm (colobot, fifengine, knightsgame, leela-zero,
pokerth, supertux, wesnoth, wesnoth-server),
* gnu/packages/geo.scm (gplates),
* gnu/packages/gnucash.scm (gnucash),
* gnu/packages/graph.scm (python-graph-tool),
* gnu/packages/graphics.scma (openshadinglanguage),
* gnu/packages/i2p.scm (i2pd),
* gnu/packages/image-viewers.scm (luminance-hdr),
* gnu/packages/kde-graphics.scm (krita),
* gnu/packages/mail.scm (astroid),
* gnu/packages/medical.scm (orthanc, orthanc-mysql,
orthanc-postgresql),
* gnu/packages/messaging.scm (libphonenumber),
* gnu/packages/mpd.scm (ncmpcpp),
* gnu/packages/networking.scm (kismet),
* gnu/packages/opencog.scm (cogutil),
* gnu/packages/photo.scm (hugin),
* gnu/packages/poedit.scm (poedit),
* gnu/packages/radio.scm (gnuradio),
* gnu/packages/rdf.scm (lucene++),
* gnu/packages/serialization.scm (avro-cpp),
* gnu/packages/simulation.scm (fenics-dolfin),
* gnu/packages/version-control.scm (gource),
* gnu/packages/video.scm (aegisub, mkvtoolnix),
* gnu/packages/web.scm (websocketpp)
[inputs]: Replace boost with boost-1.83.

* gnu/packages/libreoffice.scm (libcmis): Update to 0.6.2-00a85bf6.
(librevenge): Update to 0.0.5.
[arguments]<#:configure-flags>: Remove reference to boost system
component for which the compatibility stub has been removed.
* gnu/packages/serialization.scm (msgpack-cxx): Update to 7.0.0.

Change-Id: I247f3eaecde3de3fe227586b840f0312b4797ee1
 2025-11-28 12:26:24 +00:00
Sharlatan Hellseher
8fa839ce68 gnu: imposm3: Unvendor. 
* gnu/packages/geo.scm (imposm3): Update to 0.14.2, use G-expressions,
unvendor.
[source] <snippet>: Remove "vendor" directory.
[arguments] <build-flags>: Set version here instead of modifying
version.go file.
<test-flags>: Skip 2 problematic tests.
<test-subdirs>: Run test for the whole project.
<phases>: Remove 'set-version; add 'remove-integration-tests.
[native-inputs]: Add go-github-com-gogo-protobuf,
go-github-com-jmhodges-levigo, go-github-com-lib-pq,
go-github-com-omniscale-go-osm, go-github-com-pkg-errors, and
go-gopkg-in-yaml-v2.
[license]: Keep just project's direct license as "vendor" dirrectory was
purged.

Change-Id: Ib39c32c5ece6ac53d45d1e219f83e92d5077fa89
 2025-11-25 12:05:54 +00:00
Nicolas Graves
0d8e83034c gnu: python-fiona: Update to 1.9.6. 
* gnu/packages/geo.scm (python-fiona): Update to 1.9.6.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[propagated-inputs]: Remove python-importlib-metadata, python-six.
Replace python-click-plugins by python-click-plugins-1.
[native-inputs]: Remove python-wheel.

Change-Id: I5f47367f87ea0cca59432fcf5bdd07484c53f35e
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-11-24 20:20:49 +00:00
luca
eb77a18477 gnu: ogs-serial: Replace deprecated input. 
* gnu/packages/geo.scm (ogs-serial)[inputs]: Replace deprecated
json-modern-cxx by nlohmann-json.

Change-Id: I423e2d64375f34fa432b6b03e3eaa195d4537941
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2025-11-21 11:43:04 +01:00
Nikolay Korotkiy
b34215c15f gnu: gmt: Update to 6.6.0. 
* gnu/packages/geo.scm (gmt): Update to 6.6.0.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2025-11-17 18:04:17 +01:00
Nikolay Korotkiy
adbf76ccdb gnu: imposm3: Update to 1.14.2. 
* gnu/packages/geo.scm (imposm3): Update to 1.14.2.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2025-11-17 18:03:23 +01:00
Sharlatan Hellseher
cbad86a985 gnu: python-cython-3: Mark as deprecated. 
This is a followup to 941b6ff1c1 commit.

Replace all python-cython-3 occurrences with python-cython.

* gnu/packages/python-xyz.scm (python-cython-3): Deprecate variable.

* gnu/packages/algebra.scm (python-fpylll, python-flint)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/astronomy.scm (python-astropy, python-astroscrappy,
python-halotools, python-healpy, python-libstempo, python-lofar-h5plot,
python-losoto, python-photutils, python-pyxsim, python-regions,
python-reproject, python-sncosmo, python-sndata, python-stcal,
python-yt)[native-inputs]: Remove python-cython-3; add python-cython.

* gnu/packages/bioinformatics.scm (macs-3, python-pyrodigal):
[native-inputs]: Remove python-cython-3; add python-cython.

* gnu/packages/build-tools.scm (meson-python)[propagated-inputs]: Remove
python-cython-3; add python-cython.
[native-inputs]: Remove python-cython-3; add python-cython.

* gnu/packages/databases.scm: (python-adbc-driver-manager,
python-psycopg, python-pyarrow)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/finance.scm (python-ta-lib)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/game-development.scm (python-pygame-ce)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/geo.scm (python-pyogrio, python-cf-units)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/machine-learning.scm: (python-scikit-learn,
python-opentsne)[native-inputs]: Remove python-cython-3; add
python-cython.

* gnu/packages/maths.scm: (python-cylp, python-petsc4py,
python-primecountpy, python-slepc4py)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/python-check.scm (python-line-profiler)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/python-compression.scm (python-blosc2)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/python-graphics.scm (python-vispy)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/python-science.scm: (python-pykdtree, python-qutip,
python-scikit-misc, python-scikit-surprise, python-pandas-2,
python-vaex-core)[native-inputs]: Remove python-cython-3; add
python-cython.

* gnu/packages/python-web.scm: (python-aiohttp, python-falcon,
python-yarl, python-uvloop)[native-inputs]: Remove python-cython-3; add
python-cython.

* gnu/packages/python-xyz.scm: (python-logbook, python-netcdf4,
python-pyyaml, python-propcache, python-pywavelets, python-symengine,
python-cysignals, python-pyemd, python-rbfly)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/sagemath.scm: (python-cypari2, python-pplpy, sage)
[native-inputs]: Remove python-cython-3; add python-cython.

* gnu/packages/sphinx.scm (python-sphinx)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/statistics.scm: (python-statsmodels, python-pyreadstat):
[native-inputs]: Remove python-cython-3; add python-cython.

* gnu/packages/tor.scm (onionshare-cli)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/xorg.scm (xpra)[native-inputs]: Remove python-cython-3;
add python-cython.

Change-Id: I38038d2ab18e6a7b549070083d6e4c5beb8b0293
 2025-10-24 11:05:28 +01:00
Sughosha
c987080c88 gnu: qca, qca-qt6: Move to kde-frameworks.scm. 
* gnu/packages/kde.scm: Remove file.
* gnu/local.mk: Deregister it.
* po/packages/POTFILES.in: Ditto.
* gnu/packages/kde-frameworks.scm (qca): New variable.
(qca-qt6): Ditto.
* gnu/packages/geo.scm: Replace (gnu packages kde) with (gnu packages
kde-frameworks).
* gnu/packages/messaging.scm: Ditto.
* gnu/packages/web.scm: Ditto.
* gnu/packages/irc.scm: Remove reference to (gnu packages kde) module.
* gnu/packages/kde-education.scm: Ditto.
* gnu/packages/kde-games.scm: Ditto.
* gnu/packages/kde-graphics.scm: Ditto.
* gnu/packages/kde-internet.scm: Ditto.
* gnu/packages/kde-office.scm: Ditto.
* gnu/packages/kde-pim.scm: Ditto.
* gnu/packages/kde-plasma.scm: Ditto.
* gnu/packages/kde-systemtools.scm: Ditto.
* gnu/packages/kde-utils.scm: Ditto.
* gnu/services/desktop.scm: Ditto.

Change-Id: Ib632bc46588a2400c61fd549389001ff367c0d66
 2025-10-17 11:27:17 +02:00
Hugo Buddelmeijer
6d1bea21a3 gnu: python-scitools-iris: Fix build by updating to 3.12.3. 
* gnu/packages/geo.scm (python-scitools-iris): Update to 3.12.3.
[source]: Switch to git-fetch.
[arguments] <#:phases>: Update patches and tests to 3.12.3.
[native-inputs]: Remove python-wheel; add python-pytest-mock.

Change-Id: I69422fc4e7b60a4676c20d499e75f2afb6e488d5
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-10-14 12:06:55 +01:00
Guillaume Le Vaillant
d8de9186cd gnu: libspatialite: Fix build with libxml2 >= 2.14. 
* gnu/packages/patches/libspatialite-libxml2-2.14.patch: New file.
* gnu/local.mk (dist_pach_DATA): Register it.
* gnu/packages/geo.scm (libspatialite)[source]: Use it.

Change-Id: I24ac907c11c0592d3e9bdbba8e7f44585c1055d0
 2025-10-04 11:22:29 +02:00
Sharlatan Hellseher
7701ec84a9 gnu: python-pyproj: Switch to pyproject, fix build. 
* gnu/packages/geo.scm (python-pyproj): Fix indentation.
[bulid-system]: Switch to pyproject-build-system.
[arguments] <test-flags>: Skip some tests.
<phases>: Add 'remove-local-pyproj.
[native-inputs]: Remove python-cython; add python-cython-0 and
python-setuptools.

Change-Id: I8949a71685cf3209e59965c5b56c2d3b75d27659
 2025-09-25 09:36:50 +01:00
Lars Bilke
b9e46d0503 gnu: ogs-serial, ogs-petsc: Update to 6.5.6. 
* gnu/packages/geo.scm (ogs-serial): Update to 6.5.6.

Change-Id: I7d81477488cab02c4592bd5d7091c8f1c81e7ace
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2025-09-23 19:06:57 +02:00
Denis 'GNUtoo' Carikli
3a64c0352b gnu: navit: Fix program execution. 
* gnu/packages/geo.scm (navit)[arguments]<#:phases>
{patch-cmake_minimum_required}: New phase.

Change-Id: I91a6ef08565cbdf91e9985d581d9dfd475a0ebb2
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2025-09-18 12:08:28 +02:00