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Commit Graph

171866 Commits

Author SHA1 Message Date
Ricardo Wurmus
18aa6965f2 gnu: r-network: Enable all tests.
* gnu/packages/cran.scm (r-network)[arguments]: Remove phase
'delete-bad-tests.

Change-Id: Ie1f6a9c0cb521b217a5c65e16acbb26eeacfc3b9
2026-04-02 07:37:06 +02:00
Ricardo Wurmus
1aaeadfc5e gnu: r-shinytree: Replace custom phase with test arguments.
* gnu/packages/cran.scm (r-shinytree)[arguments]: Remove phase
'delete-bad-tests; provide SKIPPED-TESTS argument instead.

Change-Id: I176882b178735503b08cad1989b7e9e94f67b5ce
2026-04-02 07:37:06 +02:00
Ricardo Wurmus
36a628f71f gnu: r-httptest2: Replace custom phase with test arguments.
* gnu/packages/cran.scm (r-httptest2)[arguments]: Remove phase
'delete-bad-tests; provide SKIPPED-TESTS argument instead.

Change-Id: I5716ae7a024dff64e287c75b04dfa6c07a3c4d1e
2026-04-02 07:37:06 +02:00
Ricardo Wurmus
aa1940e124 gnu: r-zoo: Replace custom phase with test arguments.
* gnu/packages/cran.scm (r-zoo)[arguments]: Remove phase
'delete-bad-tests; provide SKIPPED-TESTS argument instead.

Change-Id: Ia50dff58e20faa9be118d4648b3aa2b08cb0461c
2026-04-02 07:37:06 +02:00
Ricardo Wurmus
6e0c466751 gnu: r-mosaiccore: Replace custom phase with test arguments.
* gnu/packages/cran.scm (r-mosaiccore)[arguments]: Remove phase
'delete-bad-tests; provide SKIPPED-TESTS argument instead.

Change-Id: Ibbe98827c995a92e9a7aadcc0085422973990ee5
2026-04-02 07:37:06 +02:00
Ricardo Wurmus
fffc3c0da0 gnu: r-dendextend: Enable all but one test.
* gnu/packages/cran.scm (r-dendextend)[arguments]: Remove phase
'delete-bad-tests; supply SKIPPED-TESTS argument instead.

Change-Id: I7dd31bedd66fa9fe8b57c6e4e13f2c952231fe0e
2026-04-02 07:37:06 +02:00
Ricardo Wurmus
694359fbcb gnu: r-fitdistrplus: Enable all tests.
* gnu/packages/cran.scm (r-fitdistrplus)[arguments]: Remove phase
'delete-bad-tests.

Change-Id: I2b5468d168ac4f73b2343e54c5d27f1d0f0cec2c
2026-04-02 07:37:06 +02:00
Ricardo Wurmus
c0c26f5aaf gnu: Add r-tables.
* gnu/packages/cran.scm (r-tables): New variable.

Change-Id: Ic247e02577ce0dfadc4f8628f34f0ab454f621b0
2026-04-02 07:37:06 +02:00
Ricardo Wurmus
105f255702 gnu: Add r-descr.
* gnu/packages/cran.scm (r-descr): New variable.

Change-Id: I5de2304cb863325e6f16059492f53d45a585edf4
2026-04-02 07:37:06 +02:00
Ricardo Wurmus
02f4332dc0 gnu: Add r-merderiv.
* gnu/packages/cran.scm (r-merderiv): New variable.

Change-Id: I7eba9b8c0ab6f3c034bd7b9fe17bd61926fcef18
2026-04-02 07:37:05 +02:00
Ricardo Wurmus
e87e15ba2d gnu: r-lme4: Skip one test.
* gnu/packages/cran.scm (r-lme4)[arguments]: Skip one test.

Change-Id: I6662e45cebfc42678f7893ea66890b98db0091e5
2026-04-02 07:37:05 +02:00
Ricardo Wurmus
d67c6db5d2 gnu: r-rcppml: Update to 0.3.7.1.
* gnu/packages/cran.scm (r-rcppml): Update to 0.3.7.1.
[arguments]: Delete phase 'disable-bad-tests.
[native-inputs]: Add r-nnlm.

Change-Id: I508da20cfc16cd5655f0d01712f9970b3630e326
2026-04-02 07:37:05 +02:00
Ricardo Wurmus
02e6a8fd5d gnu: r-robustbase: Replace custom phase with test arguments.
* gnu/packages/cran.scm (r-robustbase)[arguments]: Remove phase
'delete-bad-tests; provide TEST-DIRECTORY and SKIPPED-TESTS arguments.

Change-Id: Icfbb16c47a50acbc5df14ccaa319064ee84b1a77
2026-04-02 07:37:05 +02:00
Ricardo Wurmus
373064a976 gnu: r-with-tests, r-minimal: Update to 4.5.3.
* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.5.3.

Change-Id: I34bf7bf5706192d7c90f9f29cb1f9cfcde35b7fb
2026-04-02 07:37:05 +02:00
Ricardo Wurmus
09013f9d0e gnu: r-rcppparallel: Use onetbb library.
* gnu/packages/cran.scm (r-rcppparallel)[arguments]: Remove phases
'relax-gcc-14-strictness and 'gcc-compatibility.
[inputs]: Replace tbb-2020 with onetbb.

Change-Id: Ib49e21a7b44df67a46fdda899d95aa05d8b1ace9
2026-04-02 07:37:05 +02:00
Ricardo Wurmus
06475ac99e gnu: r-nanotime: Update to 0.3.13.
* gnu/packages/cran.scm (r-nanotime): Update to 0.3.13.
[native-inputs]: Add r-rcpp.

Change-Id: I489a84d38f24b60a097abf2c994664c14303417b
2026-04-02 07:37:05 +02:00
Ricardo Wurmus
dec4c2c1e6 gnu: r-openmx: Update to 2.22.11.
* gnu/packages/cran.scm (r-openmx): Update to 2.22.11.

Change-Id: Ibb358357f1e7e7ee0a42275d4f3709a1dc21055a
2026-04-02 07:37:05 +02:00
Ricardo Wurmus
76426609b2 gnu: r-terra: Update to 1.9-1.
* gnu/packages/cran.scm (r-terra): Update to 1.9-1.

Change-Id: I53951fe20076d8cfac359ea00f749756ada0225f
2026-04-02 07:37:04 +02:00
Ricardo Wurmus
d2b651f16f gnu: r-rcppalgos: Update to 2.10.0.
* gnu/packages/cran.scm (r-rcppalgos): Update to 2.10.0.

Change-Id: I76ec35173325dea89b62a5191cc7d4ba26b563d1
2026-04-02 07:37:04 +02:00
Ricardo Wurmus
f08319c284 gnu: r-ncdfcf: Update to 0.8.2.
* gnu/packages/cran.scm (r-ncdfcf): Update to 0.8.2.

Change-Id: I5c5affb6ec88c9c14a3d12cbb833929bcc10ddb6
2026-04-02 07:37:04 +02:00
Ricardo Wurmus
ade2b04a62 gnu: r-nanonext: Update to 1.8.1.
* gnu/packages/cran.scm (r-nanonext): Update to 1.8.1.

Change-Id: I1da9b899d4e7378ce32a9dbc73487987391a3f7b
2026-04-02 07:37:04 +02:00
Ricardo Wurmus
1287f4ef5d gnu: r-ctrdata: Update to 1.26.1.
* gnu/packages/cran.scm (r-ctrdata): Update to 1.26.1.

Change-Id: I6750a3d33588da297d8b062264dec1f23254ca3f
2026-04-02 07:37:04 +02:00
Ricardo Wurmus
b363bd6701 gnu: r-pagoda2: Update to 1.0.14.
* gnu/packages/cran.scm (r-pagoda2): Update to 1.0.14.

Change-Id: I1b36fe526b9c933ce393a163a4850741bb8fca51
2026-04-02 07:37:04 +02:00
Ricardo Wurmus
9aee49d65d gnu: r-phyloseq: Update to 1.54.2.
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.54.2.

Change-Id: Ide709c5d2e6186c9d816c65acbe3786917b549b4
2026-04-02 07:37:04 +02:00
Ricardo Wurmus
e360849ac5 gnu: r-sparsearray: Update to 1.10.9.
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.10.9.

Change-Id: I9ca97aae122e788997d3f74872c1df1229be4bca
2026-04-02 07:37:04 +02:00
Ricardo Wurmus
2184edcc66 gnu: r-enrichplot: Update to 1.30.5.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.30.5.

Change-Id: I5e3ee050327a5ea536e46a8136f2349e4440aefe
2026-04-02 07:37:04 +02:00
Ricardo Wurmus
f767cfc824 gnu: r-systempiper: Update to 2.16.4.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.16.4.

Change-Id: Iac7cf251a58614b71e3d2c82e52a7180f44a55a8
2026-04-02 07:37:04 +02:00
Ricardo Wurmus
1c564df9fe gnu: r-gsva: Update to 2.4.7.
* gnu/packages/bioconductor.scm (r-gsva): Update to 2.4.7.

Change-Id: I0b8d1dbf0d5563463b7af9ecf3ac5617a19c679e
2026-04-02 07:37:03 +02:00
Ricardo Wurmus
17b3d6f8b5 gnu: r-anndatar: Update to 1.0.2.
* gnu/packages/bioconductor.scm (r-anndatar): Update to 1.0.2.

Change-Id: Ib9e3b5a62fad67efa950b8ab50ac7ee5645f5f85
2026-04-02 07:37:03 +02:00
Ricardo Wurmus
1957fa7155 gnu: r-textclean: Update to 0.9.7.
* gnu/packages/cran.scm (r-textclean): Update to 0.9.7.

Change-Id: I4d650d0387f83dbe359af27b58b8ce619ab2d1d0
2026-04-02 07:37:03 +02:00
Ricardo Wurmus
b02b81b3a6 gnu: r-ragg: Update to 1.5.1.
* gnu/packages/cran.scm (r-ragg): Update to 1.5.1.

Change-Id: If45af0b4579134653be64051ff38932880f8f935
2026-04-02 07:37:03 +02:00
Ricardo Wurmus
c7c6e4fb11 gnu: r-textshaping: Update to 1.0.5.
* gnu/packages/cran.scm (r-textshaping): Update to 1.0.5.

Change-Id: I373f69797d6cadc90e07f014a9168d96955551c8
2026-04-02 07:37:03 +02:00
Ricardo Wurmus
4c6dfa16b9 gnu: r-forestplot: Update to 3.2.0.
* gnu/packages/cran.scm (r-forestplot): Update to 3.2.0.

Change-Id: I412bf585c4b1e15a5206d2e9a1552a58d3afe5f5
2026-04-02 07:37:03 +02:00
Ricardo Wurmus
1f42af9940 gnu: r-actuar: Update to 3.3-7.
* gnu/packages/cran.scm (r-actuar): Update to 3.3-7.

Change-Id: I6e0731a6ff02e411720777cf428d1f757caef6d7
2026-04-02 07:37:03 +02:00
Ricardo Wurmus
fba95435dd gnu: r-systemfonts: Update to 1.3.2.
* gnu/packages/cran.scm (r-systemfonts): Update to 1.3.2.

Change-Id: Ib82e9f1fc04b19a5711424f4df4b8a711771f21e
2026-04-02 07:37:03 +02:00
Ricardo Wurmus
cfa57b816c gnu: r-leidenalg: Update to 1.1.6.
* gnu/packages/cran.scm (r-leidenalg): Update to 1.1.6.

Change-Id: Id8bd7bbeb357b40258ddd42076f8cdd8e8205f03
2026-04-02 07:37:03 +02:00
Ricardo Wurmus
3d7d025ed9 gnu: r-ggpattern: Update to 1.3.1.
* gnu/packages/cran.scm (r-ggpattern): Update to 1.3.1.

Change-Id: I405ae568a2fa2677e016a99d485214e87ae2689c
2026-04-02 07:37:02 +02:00
Ricardo Wurmus
9d71f496dd gnu: r-testit: Update to 0.17.
* gnu/packages/cran.scm (r-testit): Update to 0.17.

Change-Id: I8d3c8b9255a8dca9574532a1ed3162824b6f34e7
2026-04-02 07:37:02 +02:00
Ricardo Wurmus
e0c0535193 gnu: r-gmisc: Update to 3.2.0.
* gnu/packages/cran.scm (r-gmisc): Update to 3.2.0.
[native-inputs]: Remove r-boot and r-rms; add r-bench and r-vdiffr.

Change-Id: I113c5a2c5dd203b1239940f8b3a9373d17e742a6
2026-04-02 07:37:02 +02:00
Ricardo Wurmus
58a4acd3f9 gnu: r-ddrtree: Update to 0.1.6.
* gnu/packages/cran.scm (r-ddrtree): Update to 0.1.6.

Change-Id: I3627152d3ed65e78d08e2e8147779ff3c1247c23
2026-04-02 07:37:02 +02:00
Ricardo Wurmus
9c350828bc gnu: r-rgl: Update to 1.3.36.
* gnu/packages/cran.scm (r-rgl): Update to 1.3.36.

Change-Id: I49d1cbd90ed4104485432f5f4b004737749d92b4
2026-04-02 07:37:02 +02:00
Ricardo Wurmus
e108a38b92 gnu: r-rcppparallel: Update to 5.1.11-2.
* gnu/packages/cran.scm (r-rcppparallel): Update to 5.1.11-2.

Change-Id: I7dc07cf9335d66d05a6848819a7413bbcd68a6ef
2026-04-02 07:37:02 +02:00
Ricardo Wurmus
96de7aa64c gnu: r-lmertest: Update to 3.2-1.
* gnu/packages/cran.scm (r-lmertest): Update to 3.2-1.

Change-Id: I05dcfe993121b3dcbf162e1c5de4840a8b2ca60a
2026-04-02 07:37:02 +02:00
Ricardo Wurmus
903df015fa gnu: r-libcoin: Update to 1.0-11.
* gnu/packages/cran.scm (r-libcoin): Update to 1.0-11.

Change-Id: Ife13b483454bd766b2c7139795b51599ed9da46b
2026-04-02 07:37:02 +02:00
Ricardo Wurmus
c1c3f65d9d gnu: r-emmeans: Update to 2.0.2.
* gnu/packages/cran.scm (r-emmeans): Update to 2.0.2.

Change-Id: I15ccc9678d5f000c9779e3f693a0a607a666fbfa
2026-04-02 07:37:02 +02:00
Ricardo Wurmus
6b494bdb63 gnu: r-nleqslv: Update to 3.3.6.
* gnu/packages/cran.scm (r-nleqslv): Update to 3.3.6.

Change-Id: I7534f409a5c02a3218f3054bb235fd3b95e8e195
2026-04-02 07:37:02 +02:00
Ricardo Wurmus
73f9482ffd gnu: r-flashclust: Update to 1.1-4.
* gnu/packages/cran.scm (r-flashclust): Update to 1.1-4.

Change-Id: If8b3c69cdd80e85cb2ebab8b2671902f0be6ae58
2026-04-02 07:37:01 +02:00
Ricardo Wurmus
8866836a0a gnu: r-renv: Update to 1.1.8.
* gnu/packages/cran.scm (r-renv): Update to 1.1.8.

Change-Id: Iff24ede74a488cf72ea3ff12bcc97049a0736680
2026-04-02 07:37:01 +02:00
Ricardo Wurmus
be062b52ac gnu: r-later: Update to 1.4.8.
* gnu/packages/cran.scm (r-later): Update to 1.4.8.

Change-Id: Iace0e377c69a3034dc16b82f8c0223e17fb35acd
2026-04-02 07:37:01 +02:00
Ricardo Wurmus
e828c8aea0 gnu: r-n2r: Update to 1.0.4.
* gnu/packages/cran.scm (r-n2r): Update to 1.0.4.

Change-Id: Ia9e8a450d30a2f539e24d11035b1f7fe2816e138
2026-04-02 07:37:01 +02:00