1
0
mirror of https://git.savannah.gnu.org/git/guix.git synced 2026-04-13 08:30:38 +02:00
Commit Graph

185453 Commits

Author SHA1 Message Date
Ricardo Wurmus
73552caf33 gnu: r-argparser: Update to 0.7.3.
* gnu/packages/cran.scm (r-argparser): Update to 0.7.3.
[native-inputs]: Remove r-testthat.

Change-Id: Ica2093025979b357143df518f4e056addcca1713
2026-03-07 11:57:30 +01:00
Ricardo Wurmus
fe3b37f4ee gnu: python-pytorch-for-r-torch: Use python-build-system.
The "bdist_wheel" target fails with:
ModuleNotFoundError: No module named 'build_bundled'

* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch)
[build-system]: Revert to python-build-system.

Change-Id: I4cfc0ed0c9465663b3b0159e55ad9c2c1b8e42b8
2026-03-07 11:57:30 +01:00
Ricardo Wurmus
a474a05a16 gnu: r-iotools: Update to 0.4-0.
* gnu/packages/cran.scm (r-iotools): Update to 0.4-0.

Change-Id: Icb9aed7e023c98d3fa10c8c455276d2114e904d8
2026-03-07 11:57:30 +01:00
Ricardo Wurmus
587b92ab43 gnu: r-fauxpas: Update to 0.6.0.
* gnu/packages/cran.scm (r-fauxpas): Update to 0.6.0.
[native-inputs]: Add r-curl.

Change-Id: I5d9a6f78fbac9adbed589ac6bda65dcb13c46c7c
2026-03-07 11:57:30 +01:00
Ricardo Wurmus
5078c8982e gnu: r-paws-common: Update to 0.8.9.
* gnu/packages/cran.scm (r-paws-common): Update to 0.8.9.

Change-Id: I4162136e4df1ca629c9e9b4a5c4f48cea43d3f2c
2026-03-07 11:57:30 +01:00
Ricardo Wurmus
6d4f233888 gnu: r-mlr3: Update to 1.4.0.
* gnu/packages/cran.scm (r-mlr3): Update to 1.4.0.

Change-Id: Ie39c6676e95fb5fff262c383bcfaba59b4617d01
2026-03-07 11:57:30 +01:00
Ricardo Wurmus
ece79a9a15 gnu: r-mlr3misc: Update to 0.20.0.
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.20.0.

Change-Id: Iec0938fd7a8a92db8714480dd92ce6d36b2d863c
2026-03-07 11:57:30 +01:00
Ricardo Wurmus
5af61f3b81 gnu: r-lobstr: Update to 1.2.0.
* gnu/packages/cran.scm (r-lobstr): Update to 1.2.0.

Change-Id: I0e40058738101e6cb3d033e4069365d5add4e7b4
2026-03-07 11:57:30 +01:00
Ricardo Wurmus
da2292b1ae gnu: r-rselenium: Update to 1.7.10.
* gnu/packages/cran.scm (r-rselenium): Update to 1.7.10.

Change-Id: Ibb1fce65e14c51d60c58cc64faa69d92708ef119
2026-03-07 11:57:30 +01:00
Ricardo Wurmus
240b0f758c gnu: r-ada: Update to 2.0-5.1.
* gnu/packages/cran.scm (r-ada): Update to 2.0-5.1.

Change-Id: I29c78bf01ed2180551352623e840a69a5f540dc8
2026-03-07 11:57:30 +01:00
Ricardo Wurmus
75ffac3027 gnu: r-clue: Update to 0.3-67.
* gnu/packages/cran.scm (r-clue): Update to 0.3-67.

Change-Id: I4ff4251bd4b8470b85492744a39202fd8723c966
2026-03-07 11:57:29 +01:00
Ricardo Wurmus
5f5b212ba4 gnu: r-gridtext: Update to 0.1.6.
* gnu/packages/cran.scm (r-gridtext): Update to 0.1.6.
[native-inputs]: Add r-vdiffr.

Change-Id: I69d8e9c4c69ee1342c94b112033e36ef23afbe06
2026-03-07 11:57:29 +01:00
Ricardo Wurmus
b347030c73 gnu: r-mlbench: Update to 2.1-7.
* gnu/packages/cran.scm (r-mlbench): Update to 2.1-7.

Change-Id: I4603bf3ce14c863a35c91c91d12f075d39b7f571
2026-03-07 11:57:29 +01:00
Ricardo Wurmus
dd8d702e8b gnu: r-rms: Update to 8.1-1.
* gnu/packages/cran.scm (r-rms): Update to 8.1-1.

Change-Id: I0367cb4dc785426c62b1a466ae49ee39a7402163
2026-03-07 11:57:29 +01:00
Ricardo Wurmus
af0768ec56 gnu: r-future-apply: Update to 1.20.2.
* gnu/packages/cran.scm (r-future-apply): Update to 1.20.2.

Change-Id: Ia4ee8ca825f1691d046655482873fde3b0a988f2
2026-03-07 11:57:29 +01:00
Ricardo Wurmus
1000d7c933 gnu: r-huge: Update to 1.4.
* gnu/packages/cran.scm (r-huge): Update to 1.4.

Change-Id: I44e5518f93d0e04eb7d02e420e9a38faf14bca2f
2026-03-07 11:57:29 +01:00
Ricardo Wurmus
4f23cb8a5b gnu: r-tm: Update to 0.7-18.
* gnu/packages/cran.scm (r-tm): Update to 0.7-18.

Change-Id: I68f588444efb344b6bf0f58ccccbeb8457a13f73
2026-03-07 11:57:29 +01:00
Ricardo Wurmus
d0332ac8a0 gnu: r-fmesher: Update to 0.7.0.
* gnu/packages/cran.scm (r-fmesher): Update to 0.7.0.

Change-Id: Ic8ee458af3825ae021e1201229cbce54975d11a9
2026-03-07 11:57:29 +01:00
Ricardo Wurmus
c7f537f956 gnu: r-ncmisc: Update to 1.3.1.
* gnu/packages/cran.scm (r-ncmisc): Update to 1.3.1.

Change-Id: I5a378c90f26608b3a643374b5d213f74c33c746e
2026-03-07 11:57:29 +01:00
Ricardo Wurmus
634def0e6a gnu: r-dofuture: Update to 1.2.1.
* gnu/packages/cran.scm (r-dofuture): Update to 1.2.1.

Change-Id: I772c137aaea0742f1567229f2fbdc24e36764779
2026-03-07 11:57:29 +01:00
Ricardo Wurmus
b54b08478a gnu: r-tseries: Update to 0.10-60.
* gnu/packages/cran.scm (r-tseries): Update to 0.10-60.

Change-Id: Ibb84f1f274699db0535b96f426f92bfe97cc63e4
2026-03-07 11:57:28 +01:00
Ricardo Wurmus
f5040f3fcc gnu: r-laplacesdemon: Update to 16.1.8.
* gnu/packages/cran.scm (r-laplacesdemon): Update to 16.1.8.

Change-Id: I95dbf673a203150797a01fd12ed275aacc308c1c
2026-03-07 11:57:28 +01:00
Ricardo Wurmus
48bba7023e gnu: r-relations: Update to 0.6-16.
* gnu/packages/cran.scm (r-relations): Update to 0.6-16.

Change-Id: Icc5f1e40185b12df0efdc748df985647b14e06dc
2026-03-07 11:57:28 +01:00
Ricardo Wurmus
6bdfff7e9c gnu: r-gap: Update to 1.14.
* gnu/packages/cran.scm (r-gap): Update to 1.14.

Change-Id: I01efce8cf804bfed091ded382df5525f94a4781b
2026-03-07 11:57:28 +01:00
Ricardo Wurmus
183a944fbb gnu: r-readr: Update to 2.2.0.
* gnu/packages/cran.scm (r-readr): Update to 2.2.0.
[propagated-inputs]: Add r-glue and r-withr.
[native-inputs]: Remove r-withr.

Change-Id: I55e7e77a73cf945c4a2d4735dbc3a5db21fd26ce
2026-03-07 11:57:28 +01:00
Ricardo Wurmus
96d16cd98f gnu: r-fuzzyjoin: Update to 0.1.8.
* gnu/packages/cran.scm (r-fuzzyjoin): Update to 0.1.8.

Change-Id: I3b990302bc25cb8c46c201c3a70dd7aad43b95ac
2026-03-07 11:57:28 +01:00
Ricardo Wurmus
be7c94bcb3 gnu: r-effects: Update to 4.2-5.
* gnu/packages/cran.scm (r-effects): Update to 4.2-5.
[native-inputs]: Add r-betareg, r-glmmtmb, r-nlme, and r-ordinal.

Change-Id: Iecafdda6a1442926df579d45034709481c577293
2026-03-07 11:57:28 +01:00
Ricardo Wurmus
cc6460e9ef gnu: r-ggiraph: Update to 0.9.5.
* gnu/packages/cran.scm (r-ggiraph): Update to 0.9.5.
[arguments]: Add phase 'set-HOME.
[propagated-inputs]: Move r-xml2 from here...
[native-inputs]: ...to here.

Change-Id: I51d7ec512153f3e9b95c63bc661247b80cef7d70
2026-03-07 11:57:28 +01:00
Ricardo Wurmus
ba6cc1c2fc gnu: r-flare: Update to 1.8.
* gnu/packages/cran.scm (r-flare): Update to 1.8.
[native-inputs]: Add r-testthat.

Change-Id: Icbae36640187e2365e6a488e777b631f37dcd45e
2026-03-07 11:57:28 +01:00
Ricardo Wurmus
88866d490d gnu: r-bb: Update to 2026.1.0.
* gnu/packages/cran.scm (r-bb): Update to 2026.1.0.
[properties]: Record updater-extra-native-inputs.

Change-Id: I0361ec2a26079d37f916f8690f117c4a352ecc45
2026-03-07 11:57:28 +01:00
Ricardo Wurmus
8422a6a819 gnu: r-ecosolver: Update to 0.6.1.
* gnu/packages/cran.scm (r-ecosolver): Update to 0.6.1.
[native-inputs]: Add r-cli.

Change-Id: I3064ae2cb11ff38043a46704e8409b2f08f42321
2026-03-07 11:57:28 +01:00
Ricardo Wurmus
0741844d93 gnu: r-voltron: Replace custom phase with #:skipped-tests.
* gnu/packages/bioinformatics.scm (r-voltron)[arguments]: Remove phase
'skip-bad-tests; provide #:skipped-tests argument.

Change-Id: I00ddc80185972d5bf7e01856b8ab0c47ffcf3fd2
2026-03-07 11:57:27 +01:00
Ricardo Wurmus
90a69aefe0 gnu: r-caretensemble: Replace custom phase with #:skipped-tests.
* gnu/packages/cran.scm (r-caretensemble)[arguments]: Remove phase
'disable-bad-tests; provide #:skipped-tests argument.

Change-Id: I52908e2bd76c8e7469f645b7da2bc7578be04684
2026-03-07 11:57:27 +01:00
Ricardo Wurmus
9681cd9c7c gnu: r-lightgbm: Replace custom phase with #:skipped-tests.
* gnu/packages/cran.scm (r-lightgbm)[arguments]: Remove phase
'disable-bad-tests; provide #:skipped-tests argument.

Change-Id: If43dc4a7baa5f237a8a01416459160acdc989d93
2026-03-07 11:57:27 +01:00
Ricardo Wurmus
764a5ee76b gnu: r-rvenn: Replace custom phase with #:skipped-tests.
* gnu/packages/cran.scm (r-rvenn)[arguments]: Remove phase
'skip-bad-tests; provide #:skipped-tests argument.

Change-Id: I4f4fec580c5a26e1083d114e226fc6edf66db3fd
2026-03-07 11:57:27 +01:00
Ricardo Wurmus
308f1c1cb7 gnu: r-mosaic: Replace custom phase with #:skipped-tests.
* gnu/packages/cran.scm (r-mosaic)[arguments]: Remove phase
'delete-bad-tests; provide #:skipped-tests argument.

Change-Id: I4585305e3e0281dd678e33cc7597b03c57514dba
2026-03-07 11:57:27 +01:00
Ricardo Wurmus
492ad617d2 gnu: r-rsconnect: Replace custom phase with #:skipped-tests.
* gnu/packages/cran.scm (r-rsconnect)[arguments]: Remove phase
'disable-bad-test; provide #:skipped-tests argument.

Change-Id: I77ff5e4f0882e2db0db2637fa0367389a6589c7d
2026-03-07 11:57:27 +01:00
Ricardo Wurmus
7c2abf053f gnu: r-phangorn: Replace custom phase with #:skipped-tests.
* gnu/packages/cran.scm (r-phangorn)[arguments]: Remove phase
'disable-bad-test; provide #:skipped-tests argument.

Change-Id: Ia67c1bd17c811a68b235658557d73bed5209429b
2026-03-07 11:57:27 +01:00
Ricardo Wurmus
22b59fbb0e gnu: r-latex2exp: Replace custom phase with #:skipped-tests.
* gnu/packages/cran.scm (r-latex2exp)[arguments]: Remove phase
'disable-bad-test; provide #:skipped-tests argument.

Change-Id: I53d97088580d22cccd22ce1337daf759b287caab
2026-03-07 11:57:27 +01:00
Ricardo Wurmus
b037d56288 gnu: r-glmmtmb: Replace custom phase with #:skipped-tests.
* gnu/packages/cran.scm (r-glmmtmb)[arguments]: Remove phase
'disable-bad-tests; provide #:skipped-tests argument.

Change-Id: I686851d6f9708c8398338bdfd330b2aee5be11b5
2026-03-07 11:57:27 +01:00
Ricardo Wurmus
74d0223f01 gnu: r-options: Replace custom phase with #:skipped-tests.
* gnu/packages/cran.scm (r-options)[arguments]: Remove phase
'disable-bad-tests; provide #:skipped-tests argument.

Change-Id: I77a486511664b373ea5b365ae2ea82c83c53dffd
2026-03-07 11:57:27 +01:00
Ricardo Wurmus
785f3e5307 gnu: r-seqminer: Replace custom phase with #:skipped-tests.
* gnu/packages/cran.scm (r-seqminer)[arguments]: Remove phase
'disable-bad-tests; provide #:skipped-tests argument.

Change-Id: Ic2039a9c524567f17bb92fa23a0fc7d1fef5bf4e
2026-03-07 11:57:26 +01:00
Ricardo Wurmus
5bb61ded37 gnu: r-seqminer: Add missing inputs.
* gnu/packages/cran.scm (r-seqminer)[inputs]: Add bzip2, sqlite, and zstd:lib.
[properties]: Record updater-extra-inputs.

Change-Id: I3cce94e1368a3376185203b19cbd416ce05ceb44
2026-03-07 11:57:26 +01:00
Ricardo Wurmus
484f1efbdc gnu: r-arrow: Replace custom phase with #:skipped-tests.
* gnu/packages/cran.scm (r-arrow)[arguments]: Remove phase
'delete-bad-tests; provide #:skipped-tests argument.

Change-Id: I4a39c72c2b1df2c7d75ac059035490ed79bce3f1
2026-03-07 11:57:26 +01:00
Ricardo Wurmus
ec87bbbf69 gnu: r-proxyc: Replace custom phase with #:skipped-tests.
* gnu/packages/cran.scm (r-proxyc)[arguments]: Remove phase
'patch-bad-tests; provide #:skipped-tests argument.

Change-Id: Ic4543f7393b0479415a1e16d1e4f33c813fd3b0b
2026-03-07 11:57:26 +01:00
Ricardo Wurmus
a496f62ae0 gnu: r-bedr: Replace custom phase with #:skipped-tests.
* gnu/packages/cran.scm (r-bedr)[arguments]: Remove phase
'skip-bad-tests; provide #:skipped-tests argument.

Change-Id: I5315e8ac3b9766afce682d3b2c479fa1dd318daa
2026-03-07 11:57:26 +01:00
Ricardo Wurmus
aa23a17d10 gnu: r-data-tree: Replace custom phase with #:skipped-tests.
* gnu/packages/cran.scm (r-data-tree)[arguments]: Remove phase
'disable-bad-tests; provide #:skipped-tests argument.

Change-Id: Ie862d05fb5554c82fe4a530a3cd9112ab79add91
2026-03-07 11:57:26 +01:00
Ricardo Wurmus
5574c903f4 gnu: r-bindr: Replace custom phase with #:skipped-tests.
* gnu/packages/cran.scm (r-bindr)[arguments]: Remove phase
'testthat-compatibility; provide #:skipped-tests argument.

Change-Id: I478791ae7ec8c75f48846a1efe547db6a0de4387
2026-03-07 11:57:26 +01:00
Ricardo Wurmus
82c6def8f5 gnu: r-flextable: Replace custom phase with #:skipped-tests.
* gnu/packages/cran.scm (r-flextable)[arguments]: Remove phase
'disable-bad-tests; provide #:skipped-tests argument.

Change-Id: Ia61deb9513b9d24b38aafa0bed231efd5d7cd362
2026-03-07 11:57:26 +01:00
Ricardo Wurmus
85289d3d7c gnu: r-lintr: Replace custom phase with #:skipped-tests.
* gnu/packages/cran.scm (r-lintr)[arguments]: Remove phase
'disable-bad-tests; provide #:skipped-tests argument.

Change-Id: I3535002b9e3839b0dfaf6d41a9d7fb646f81c28b
2026-03-07 11:57:26 +01:00