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030900747b27643c73400a806ebabc00d9a943ff
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84437 Commits

Author SHA1 Message Date
Efraim Flashner
030900747b Revert "gnu: Add %final-inputs-riscv64." 
This reverts commit 0444be8689.

This is no longer necessary after the gcc STARTFILE_PREFIX_SPEC commit.
 2022-03-16 12:16:15 +02:00
Efraim Flashner
32f52f82b3 gnu: gcc: For riscv64-linux remove STARTFILE_PREFIX_SPEC. 
* gnu/packages/gcc.scm (gcc-4.7)[arguments]: When building for
riscv64-linux and the 'gcc/configure/riscv' directory exists adjust the
STARTFILE_PREFIX_SPEC so it doesn't do anything.
 2022-03-16 12:09:42 +02:00
kiasoc5
53370c7b03 gnu: httpie: Update to 3.1.0 [security fixes]. 
Fixes CVE-2022-24737 and CVE-2022-0430.

* gnu/packages/python-web.scm (httpie): Update to 3.1.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2022-03-15 20:01:33 -04:00
zimoun
8a0713aef2 gnu: Add r-diffcyt. 
* gnu/packages/bioconductor.scm (r-diffcyt): New variable.
 2022-03-15 22:55:37 +01:00
zimoun
69af58e9a1 gnu: Add r-ga. 
* gnu/packages/cran.scm (r-ga): New variable.
 2022-03-15 22:55:01 +01:00
zimoun
76f96c891c gnu: Add r-carrier. 
* gnu/packages/cran.scm (r-carrier): New variable.
 2022-03-15 22:54:14 +01:00
zimoun
71ec67ef3f gnu: Add r-babelwhale. 
* gnu/packages/cran.scm (r-babelwhale): New variable.
 2022-03-15 22:53:09 +01:00
zimoun
59978546fe gnu: Add r-polychrome. 
* gnu/packages/cran.scm (r-polychrome): New variable.
 2022-03-15 22:52:37 +01:00
zimoun
fdbc472bd1 gnu: Add r-scannotatr. 
* gnu/packages/bioconductor.scm (r-scannotatr): New variable.
 2022-03-15 22:50:42 +01:00
Ricardo Wurmus
bec806e2fc gnu: r-sn: Update to 2.0.2. 
* gnu/packages/statistics.scm (r-sn): Update to 2.0.2.
 2022-03-15 22:14:47 +01:00
Ricardo Wurmus
b3dbb32bb3 gnu: r-dt: Update to 0.21. 
* gnu/packages/statistics.scm (r-dt): Update to 0.21.
 2022-03-15 22:14:47 +01:00
Ricardo Wurmus
b6a1cc89d4 gnu: r-simr: Update to 1.0.6. 
* gnu/packages/statistics.scm (r-simr): Update to 1.0.6.
[propagated-inputs]: Add r-lmertest.
[synopsis]: Change case and spelling.
[description]: Use complete sentences.
 2022-03-15 22:14:47 +01:00
Ricardo Wurmus
6c30609f23 gnu: r-rmarkdown: Update to 2.13. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.13.
[propagated-inputs]: Add r-bslib.
 2022-03-15 22:14:46 +01:00
Ricardo Wurmus
be72c056f6 gnu: r-withr: Update to 2.5.0. 
* gnu/packages/statistics.scm (r-withr): Update to 2.5.0.
 2022-03-15 22:14:46 +01:00
Ricardo Wurmus
f077fa0fd0 gnu: r-openssl: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-openssl): Update to 2.0.0.
 2022-03-15 22:14:46 +01:00
Ricardo Wurmus
2af90fa53e gnu: r-commonmark: Update to 1.8.0. 
* gnu/packages/statistics.scm (r-commonmark): Update to 1.8.0.
 2022-03-15 22:14:46 +01:00
Ricardo Wurmus
46a1b44782 gnu: r-desc: Update to 1.4.1. 
* gnu/packages/statistics.scm (r-desc): Update to 1.4.1.
[propagated-inputs]: Remove r-crayon; add r-cli.
 2022-03-15 22:14:46 +01:00
Ricardo Wurmus
f2386cafcf gnu: r-bbmisc: Update to 1.12. 
* gnu/packages/statistics.scm (r-bbmisc): Update to 1.12.
[propagated-inputs]: Add r-data-table.
 2022-03-15 22:14:46 +01:00
Ricardo Wurmus
4bc8d24e16 gnu: r-locfit: Update to 1.5-9.5. 
* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.5.
 2022-03-15 22:14:46 +01:00
Ricardo Wurmus
b0e3061665 gnu: r-rlang: Update to 1.0.2. 
* gnu/packages/statistics.scm (r-rlang): Update to 1.0.2.
 2022-03-15 22:14:46 +01:00
Ricardo Wurmus
4f9f37cfa9 gnu: r-survival: Update to 3.3-1. 
* gnu/packages/statistics.scm (r-survival): Update to 3.3-1.
 2022-03-15 22:14:46 +01:00
Ricardo Wurmus
7751e96df2 gnu: r-bien: Update to 1.2.5. 
* gnu/packages/cran.scm (r-bien): Update to 1.2.5.
[native-inputs]: Remove r-testthat.
 2022-03-15 22:14:46 +01:00
Ricardo Wurmus
d66b958b6d gnu: r-filehash: Update to 2.4-3. 
* gnu/packages/cran.scm (r-filehash): Update to 2.4-3.
 2022-03-15 22:14:45 +01:00
Ricardo Wurmus
88716a4694 gnu: r-pdftools: Update to 3.1.1. 
* gnu/packages/cran.scm (r-pdftools): Update to 3.1.1.
 2022-03-15 22:14:45 +01:00
Ricardo Wurmus
aaec4f36a8 gnu: r-mlr3tuning: Update to 0.12.1. 
* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.12.1.
 2022-03-15 22:14:45 +01:00
Ricardo Wurmus
4ad704ee05 gnu: r-bbotk: Update to 0.5.1. 
* gnu/packages/cran.scm (r-bbotk): Update to 0.5.1.
 2022-03-15 22:14:45 +01:00
Ricardo Wurmus
c01ae306ad gnu: r-mlr3: Update to 0.13.3. 
* gnu/packages/cran.scm (r-mlr3): Update to 0.13.3.
 2022-03-15 22:14:45 +01:00
Ricardo Wurmus
e14b368dfe gnu: r-parsnip: Update to 0.2.0. 
* gnu/packages/cran.scm (r-parsnip): Update to 0.2.0.
[propagated-inputs]: Add r-cli, r-ggplot2, and r-withr.
 2022-03-15 22:14:45 +01:00
Ricardo Wurmus
f4e5ed1120 gnu: r-posterior: Update to 1.2.1. 
* gnu/packages/cran.scm (r-posterior): Update to 1.2.1.
 2022-03-15 22:14:45 +01:00
Ricardo Wurmus
bb98e8bbf6 gnu: r-latex2exp: Update to 0.9.4. 
* gnu/packages/cran.scm (r-latex2exp): Update to 0.9.4.
 2022-03-15 22:14:45 +01:00
Ricardo Wurmus
5fc38f7ab6 gnu: r-shinystan: Update to 2.6.0. 
* gnu/packages/cran.scm (r-shinystan): Update to 2.6.0.
[propagated-inputs]: Remove r-rsconnect.
 2022-03-15 22:14:45 +01:00
Ricardo Wurmus
682d4a4b64 gnu: r-semplot: Update to 1.1.5. 
* gnu/packages/cran.scm (r-semplot): Update to 1.1.5.
 2022-03-15 22:14:44 +01:00
Ricardo Wurmus
3a7e5bb521 gnu: r-qgraph: Update to 1.9.2. 
* gnu/packages/cran.scm (r-qgraph): Update to 1.9.2.
 2022-03-15 22:14:44 +01:00
Ricardo Wurmus
5b992f4b42 gnu: r-openmx: Update to 2.20.6. 
* gnu/packages/cran.scm (r-openmx): Update to 2.20.6.
 2022-03-15 22:14:44 +01:00
Ricardo Wurmus
1e2b297a56 gnu: r-sem: Update to 3.1-14. 
* gnu/packages/cran.scm (r-sem): Update to 3.1-14.
 2022-03-15 22:14:44 +01:00
Ricardo Wurmus
183581903e gnu: r-quanteda: Update to 3.2.1. 
* gnu/packages/cran.scm (r-quanteda): Update to 3.2.1.
 2022-03-15 22:14:44 +01:00
Ricardo Wurmus
37d4f83a2c gnu: r-torch: Update to 0.7.2. 
* gnu/packages/cran.scm (r-torch): Update to 0.7.2.
 2022-03-15 22:14:44 +01:00
Ricardo Wurmus
e8104d1d63 gnu: r-caret: Update to 6.0-91. 
* gnu/packages/cran.scm (r-caret): Update to 6.0-91.
 2022-03-15 22:14:44 +01:00
Ricardo Wurmus
e910b87515 gnu: r-imager: Update to 0.42.13. 
* gnu/packages/cran.scm (r-imager): Update to 0.42.13.
 2022-03-15 22:14:44 +01:00
Ricardo Wurmus
2cc2e440dc gnu: r-seewave: Update to 2.2.0. 
* gnu/packages/cran.scm (r-seewave): Update to 2.2.0.
 2022-03-15 22:14:44 +01:00
Ricardo Wurmus
0d76859355 gnu: r-sysfonts: Update to 0.8.8. 
* gnu/packages/cran.scm (r-sysfonts): Update to 0.8.8.
 2022-03-15 22:14:43 +01:00
Ricardo Wurmus
13bb00192c gnu: r-bio3d: Update to 2.4-3. 
* gnu/packages/cran.scm (r-bio3d): Update to 2.4-3.
 2022-03-15 22:14:43 +01:00
Ricardo Wurmus
f4f1a353ae gnu: r-pracma: Update to 2.3.8. 
* gnu/packages/cran.scm (r-pracma): Update to 2.3.8.
 2022-03-15 22:14:43 +01:00
Ricardo Wurmus
84e5b9fac2 gnu: r-parameters: Update to 0.17.0. 
* gnu/packages/cran.scm (r-parameters): Update to 0.17.0.
 2022-03-15 22:14:43 +01:00
Ricardo Wurmus
766f8ea02c gnu: r-styler: Update to 1.7.0. 
* gnu/packages/cran.scm (r-styler): Update to 1.7.0.
[propagated-inputs]: Remove r-backports, r-glue, and r-xfun.
 2022-03-15 22:14:43 +01:00
Ricardo Wurmus
c0d132d4d1 gnu: r-mcmcpack: Update to 1.6-1. 
* gnu/packages/cran.scm (r-mcmcpack): Update to 1.6-1.
 2022-03-15 22:14:43 +01:00
Ricardo Wurmus
03800a95b0 gnu: r-float: Update to 0.2-6.1. 
* gnu/packages/cran.scm (r-float): Update to 0.2-6.1.
 2022-03-15 22:14:43 +01:00
Ricardo Wurmus
15970c6e21 gnu: r-sf: Update to 1.0-7. 
* gnu/packages/cran.scm (r-sf): Update to 1.0-7.
 2022-03-15 22:14:42 +01:00
Ricardo Wurmus
4a3b7e497b gnu: r-udunits2: Update to 0.13.2.1. 
* gnu/packages/cran.scm (r-udunits2): Update to 0.13.2.1.
 2022-03-15 22:14:42 +01:00
Ricardo Wurmus
4e8e54a47f gnu: r-gamlss-dist: Update to 6.0-3. 
* gnu/packages/cran.scm (r-gamlss-dist): Update to 6.0-3.
 2022-03-15 22:14:42 +01:00