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165767 Commits

Author SHA1 Message Date
Hugo Buddelmeijer
0415cedcb3 gnu: python-celery: Fix build on CI. 
The issue with "Too many open files" is known by upstream and has been
reported several times already:

- high concurrency results in OSError,
<https://github.com/celery/celery/issues/4541>, (2018).
- Autoreload doesn't reload if modules imported by the tasks module
change, <https://github.com/celery/celery/issues/1025>, (2012).
- OSError: Too many open files,
<https://github.com/celery/celery/issues/887>, (2012).

* gnu/packages/python-xyz.scm (python-celery): Fix build on ci.
[arguments]<:#test-flags>: Disable tests that fail on the CI.

Change-Id: I47f132a7f4c10cfa28e756699a565cb53c4f2e04
Reviewed-by: Cayetano Santos <csantosb@inventati.org>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:53 +01:00
Sharlatan Hellseher
c7eb8d113d gnu: python-pyjanitor: Update to 0.32.5. 
* gnu/packages/python-science.scm (python-pyjanitor): Update to 0.32.5.
[arguments] <test-flags>: Rework ignored/skipped tests.
[propagated-inputs]: Remove python-requests.
[native-inputs]: Add python-openpyxl and python-requests.
[synopsys]: pandas->Pandas.

Change-Id: I12f3f1f6ab84d63882325103e8c729d44656c97c
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:52 +01:00
Sharlatan Hellseher
79a8ef238e gnu: python-pandas-flavor: Update to 0.8.1. 
* gnu/packages/python-science.scm (python-pandas-flavor): Update to 0.8.1.
[phases]{fix-pytest-config}: New phase.
[propagated-inputs]: Remove python-lazy-loader and python-packaging.
[native-inputs]: Add python-setuptools and python-setuptools-scm.

Change-Id: I1f1325350f77ed61146f32da5bdc81aad1daec27
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:51 +01:00
Nicolas Graves
43f548eb74 gnu: h-client: Switch to pyproject. 
* gnu/packages/hardware.scm (h-client):
[arguments]<#:imported-modules, #:modules, #:phases>: Switch to
pyproject-build-system.
<#:test-backend>: Set it.
<#:phases>: Relocate phase 'glib-or-gtk-wrap.
[native-inputs]: Add python-setuptools.

Change-Id: I525ea229449ed46721d17f458a46f3222804ac4e
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:50 +01:00
Nicolas Graves
3cc8a0405b gnu: hplip: Switch to pyproject. 
* gnu/packages/cups.scm (hplip):
[arguments]<#:imported-modules, #:modules, #:phases>: Switch to
pyproject-build-system.

Change-Id: I0150ce69467c4409ce6dfa45d094304d42c98f01
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:50 +01:00
Nicolas Graves
a599cda324 gnu: sugar-datastore: Switch to pyproject. 
* gnu/packages/sugar.scm (sugar-datastore):
[arguments]<#:imported-modules, #:modules, #:phases>: Switch to
pyproject-build-system.

Change-Id: Iacbdc6a880ceedcc8d325187703f1e1a7e90c9de
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:49 +01:00
Nicolas Graves
5050f87e59 gnu: sugar: Switch to pyproject. 
* gnu/packages/sugar.scm (sugar):
[arguments]<#:imported-modules, #:modules, #:phases>: Switch to
pyproject-build-system.

Change-Id: I91ebeb1506cbc0ab50d2ed38e890d34ed9abe8c2
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:48 +01:00
Nicolas Graves
14dd2be407 gnu: electron-cash: Switch to pyproject. 
* gnu/packages/finance.scm (electron-cash):
[build-system]: Switch to pyproject-build-system.
[arguments]<#:imported-modules, #:modules, #:phases>: Switch to
pyproject-build-system.
[native-inputs]: Add python-setuptools.

Change-Id: I1efbf1015ca605f12b8a6799827415cd3711beae
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:47 +01:00
Nicolas Graves
733ec52b07 gnu: rdkit: Switch to pyproject. 
* gnu/packages/chemistry.scm (rdkit):
[arguments]<#:imported-modules, #:modules, #:phases>: Switch to
pyproject-build-system.
<#:phases>: Take phases 'enable-bytecode-determinism and
'add-install-to-pythonpath from pyproject.

Change-Id: If8b134d38b3e23a6974469c1e68b2834219bd67b
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:47 +01:00
Nicolas Graves
4acb4ce02e gnu: createrepo-c: Switch to pyproject. 
* gnu/packages/rpm.scm (createrepo-c):
[arguments]<#:imported-modules, #:modules, #:phases>: Switch to
pyproject-build-system.

Change-Id: I54168510e40607007d89de2cb6e4fa8df166eaba
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:46 +01:00
Nicolas Graves
04365b11c2 gnu: gemmi: Switch to pyproject. 
* gnu/packages/chemistry.scm (gemmi):
[arguments]<#:imported-modules, #:modules, #:phases>: Switch to
pyproject-build-system.

Change-Id: Id2bd46050b2820945d5a9d90e17e1c5d1e61c40e
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:45 +01:00
Nicolas Graves
8ca97597fd gnu: python-xapp: Drop uneeded arguments. 
* gnu/packages/cinnamon.scm (python-xapp)[arguments]: Drop all of them
except <#:tests?>.

Change-Id: I78923c421aa7d3169815689d9681eadc41caec96
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:44 +01:00
Nicolas Graves
4f6d69b4a1 gnu: libxapp: Switch to pyproject. 
* gnu/packages/cinnamon.scm (libxapp):
[arguments]<#:modules, #:imported-modules, #:configure-flags, #:phases>:
Switch to pyproject-build-system.
<#:phases>: In phase 'set-gtk-module-path, use helper string-quote.

Change-Id: Ibfb493d070a739b3114f4fd222d97dd98024981b
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:43 +01:00
Ashish SHUKLA
e6d1f85a91 gnu: libcap-ng: Update to 0.9. 
* gnu/packages/admin.scm (libcap-ng): Update to 0.9.
Add inputs. Add native-inputs. [source]<origin>: Switch to git.

Change-Id: I078613133e858e83ea2f299f4bb05fe9ceefe09e
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:43 +01:00
Felix Gruber
cc0f8c7ea7 gnu: Add python-flask-paginate. 
* gnu/packages/python-web.scm (python-flask-paginate): New variable.

Change-Id: I38eefde359691ce5856bd979e8b7821f83ca3a86
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:42 +01:00
Sergey Trofimov
e0d72d83c3 gnu: darkman: Update to 2.3.0. 
* gnu/packages/xdisorg.scm (darkman): Update to 2.3.0.
[native-inputs]: Remove go-github-com-adrg-xdg and
go-github-com-rxwycdh-rxhash, add go-github-com-lmittmann-tint.

Change-Id: Ib48e017acda7fcdf8a16a065ab1fc0180bb5578d
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:41 +01:00
Sergey Trofimov
374a52656f gnu: Add go-github-com-lmittmann-tint. 
* gnu/packages/golang-xyz.scm (go-github-com-lmittmann-tint): New variable.

Change-Id: Id5f471d26dd9e43a1e52cd5fec147393c8b0e498
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:40 +01:00
Remco van 't Veer
64c2c052a0 gnu: quodlibet: Fix operon GI path. 
* gnu/packages/music.scm (quodlibet):
[arguments]: Add operon to wrap-extra-paths.

Change-Id: Iaba432f3b73995acaf757cb39a09961bfdd358d5
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:39 +01:00
Ashish SHUKLA
9e6c31bb10 gnu: fastfetch-minimal: Update to 2.57.0 
* gnu/packages/admin.scm (fastfetch-minimal): Update to 2.57.0.
[source]<snippet>: Patch local yyjson reference.

Change-Id: Ic50d237da88b0576fce1ab1c88ac29ee6f889c44
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:39 +01:00
Sören Tempel
41e8641379 gnu: python-scikit-misc: Don't propagate python-numpydoc. 
* gnu/packages/python-science.scm (python-scikit-misc)
[propagated-inputs]: Remove python-numpydoc.
[native-inputs]: Add python-numpydoc.

Change-Id: I9f3d3550789dd2943f496d90f59a063ac7df5e97
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:38 +01:00
Sören Tempel
766ac5a306 gnu: python-pynetdicom: Don't propagate python-numpydoc. 
* gnu/packages/python-science.scm (python-pynetdicom)
[propagated-inputs]: Remove python-numpydoc.
[native-inputs]: Add python-numpydoc.

Change-Id: Ib0bc20a289972af1d346f38213413c6930218ef0
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:37 +01:00
Sören Tempel
e60a997f62 gnu: python-liana-py: Don't propagate python-numpydoc. 
* gnu/packages/bioinformatics.scm (python-liana-py)
[propagated-inputs]: Remove python-numpydoc.
[native-inputs]: Add python-numpydoc.

Change-Id: I3691a1db99010926b80de7aed5b29e5602210aa2
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:36 +01:00
Sharlatan Hellseher
2e3469379b gnu: python-tmx: Switch to pyproject. 
* gnu/packages/game-development.scm (python-tmx):
[build-system]: Switch to pyproejct-build-system.
[arguments] <tests?>: No tests.
[native-inputs]: Add python-setuptools.

Change-Id: I30d4034b8cc38e35175b5c30b5914ce74cfe1473
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:35 +01:00
Nicolas Graves
f65c0f780c gnu: assword: Rename to impass. 
From upstream URL <https://finestructure.net/assword/>:

  The assword password management system project as been renamed
  "impass", and has moved to https://salsa.debian.org/debian/impass.

* gnu/packages/password-utils.scm (assword): Deprecate and move from here…
(impass): …to here.  Update to 0.14.1.
[arguments]<#:phases>: Rename assword to impass.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools.
[home-page, description]: Rename assword to impass.

Change-Id: I985baf1a6319b3a07f71eb50d72e42ea5a3d6185
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:34 +01:00
Nicolas Graves
c51b16f3a0 gnu: python-jsonnet: Switch to pyproject. 
* gnu/packages/cpp.scm (python-jsonnet):
[build-system]: Switch to pyproject-build-system.
[arguments]<#:test-flags>: Ignore wrong search directory.
[native-inputs]: Add python-pyyaml, python-pytest, python-setuptools.

Change-Id: Ib85b5d1088fef2dfc3bff15460d1b061caeb73df
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:34 +01:00
Nicolas Graves
5d3684a594 gnu: python-pygame: Update to 2.6.1. 
* gnu/packages/game-development.scm (python-pygame): Update to 2.6.1.
[arguments]<#:test-flags>: Ignore failing tests.
<#:phases>: Add phase 'pre-check.
[native-inputs]: Add python-numpy, python-pytest, python-setuptools.

Change-Id: I867272ede9e85becc0de5f95307244535d29666e
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:33 +01:00
Nicolas Graves
09a04a7b15 gnu: terminator: Switch to pyproject. 
* gnu/packages/gnome.scm (terminator):
[build-system]: Switch to pyproject-build-system.
[arguments]: Relocate field.  Improve style, use G-expressions.
<#·phases>: Refresh them.
[inputs]: Improve style, drop labels.
[native-inputs]: Improve style, drop labels.  Add python-setuptools.

Change-Id: If10ee5e3e9a738b695b4b06f01e6cd4f5a02a938
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:32 +01:00
Nicolas Graves
8c54a0bd12 gnu: python-librecaptcha: Switch to pyproject. 
* gnu/packages/messaging.scm (python-librecaptcha):
[build-system]: Switch to pyproject-build-system.
[arguments]<#:tests?>: Disable them.
[native-inputs]: Add python-setuptools.
[propagated-inputs]: Sort them, improve style.

Change-Id: I5449a3a417f247e4ce06a8a493586addf318a89f
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:31 +01:00
Nicolas Graves
578911c3cb gnu: weechat-wee-slack: Update to 2.11.0. 
* gnu/packages/messaging.scm (weechat-wee-slack): Update to 2.11.0.
[build-system]: Switch to pyproject-build-system.
[arguments]: Improve style, use G-expressions.
<#:phases>: Remove 'check phase replacement.
[native-inputs]: Add python-setuptools.

Change-Id: I60d07bfff4e7ad07ffd90ea226275569cd08748f
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:31 +01:00
Nicolas Graves
8ec85a9ddf gnu: python-ruffus: Switch to pyproject. 
* gnu/packages/python-science.scm (python-ruffus):
[build-system]: Switch to pyproject-build-system.
[arguments]<#:phases>: Improve style.  Improve 'check phase.
[native-inputs]: Add python-setuptools.

Change-Id: If6607ce5db313c97d5aaff062ac8bfa4b55d5dee
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:30 +01:00
Nicolas Graves
e42ad05e32 gnu: python-geosketch: Update to 1.3. 
* gnu/packages/python-science.scm (python-geosketch): Update to 1.3.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:tests>: Ignore them.
[native-inputs]: Add python-setuptools.

Change-Id: Ib86bb1a690585d925f3cd7ba801e89e04273d8e1
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:29 +01:00
Nicolas Graves
f1d764a801 gnu: calibre: Update to 8.16.2. 
* gnu/packages/ebook.scm (calibre): Update to 8.16.2.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:use-setuptools?>: Drop it.
<#:phases>: Replace phases 'build, 'install and 'check with former
variants.
[native-inputs]: Add python-setuptools, python-tzdata, python-tzlocal.

Change-Id: Ia4b4688af55aa88bae41b959a66ad2224093071a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:28 +01:00
Nicolas Graves
12021475e8 gnu: python-xsge: Switch to pyproject. 
* gnu/packages/game-development.scm (python-xsge):
[build-system]: Switch to pyproject-build-system.
[arguments]<#:configure-flags>: Set them.
<#:phases>: Replace 'build phase along with the 'install one.
[native-inputs]: Add python-setuptools.

Change-Id: I6858d63a87e813df0aea78854c3ce56a6d5c94d0
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:27 +01:00
Jean-Baptiste Note
a6306eb0bc gnu: Bump rocm to version 7.1.0 
* gnu/packages/llvm.scm (%rocm-llvm-version): New variable.
(make-llvm-rocm): New procedure.
(llvm-rocm): New variable.
(make-clang-runtime-rocm): New procedure.
(clang-runtime-rocm): New variable.
(make-clang-rocm): New procedure.
(clang-rocm): New variable.
(rocm-device-libs): New variable.
(rocm-comgr): New variable.
(rocm-hipcc): New variable.
(make-lld-rocm): New procedure.
(lld-rocm): New variable.
* gnu/packages/rocm.scm: Add perl to imports.
(%rocm-version): Update to 7.1.0.
(%rocm-systems-url, %rocm-systems-origin): New variables.
(rocr-runtime): Use %rocm-systems-origin and update build.
(rocm-opencl-runtime): Use %rocm-systems-origin and update build.
(rocm-hip-runtime): New variable.
(rocminfo): Use %rocm-systems-origin and update build.
(%default-amdgpu-targets, %default-amdgpu-targets-property): New variables.
(%amdgpu-targets): New syntax.
(rocm-bandwidth-test): Update and add comprehensive build support.
* gnu/local.mk: Add rocm-bandwidth-test patches.
* gnu/packages/patches/rocm-bandwidth-test-fix-external-packages-search.patch,
gnu/packages/patches/rocm-bandwidth-test-fix-hsa-include-file-lookup.patch,
gnu/packages/patches/rocm-bandwidth-test-take-default-gpus-from-environment.patch:
New files.
* gnu/packages/patches/rocclr-5.6.0-enable-gfx800.patch,
gnu/packages/patches/rocm-opencl-runtime-4.3-noclinfo.patch: Update patch paths.

Change-Id: I43f162b9f8ab898e25d8ecbe4ea30be84a29eb0d
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:27 +01:00
Ludovic Courtès
a43d32577d gnu: guile: Add 3.0.11. 
This reinstates 2b3782eb6e, which was reverted
in f54a032cec760ff2c3af87e5a45dd305a84dfa48; see
<https://codeberg.org/guix/guix/pulls/4747>.

* gnu/packages/guile.scm (guile-3.0.11): New variable.
(guile-3.0-latest): Add comment.
* gnu/packages/patches/guile-3.0.11-cross-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Change-Id: Id8ec934bb504750a5cefb5d417eab84175c47d01
Co-authored-by: Yelninei <yelninei@tutamail.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Merges: #5360
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:26 +01:00
Andreas Enge
64acb4e65d gnu: Remove hdf4-alt. 
* gnu/packages/maths.scm (hdf4-alt): Delete variable.

Change-Id: I1674afe82952c473a7718371a4ffeb79e49c4020
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:24 +01:00
Andreas Enge
883fb1e942 gnu: coda: Remove hdf4 input. 
* gnu/packages/maths.scm (coda)[inputs]: Remove hdf4-alt.
[arguments]<#:configure-flags>: Drop "--with-hdf4".

Change-Id: I379b8f1f8bec79caf399999211e2778d4dbdd9c4
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:23 +01:00
Andreas Enge
5521cba2e9 gnu: Remove hdf4. 
* gnu/packages/maths.scm (hdf4): Delete variable.

Fixes: guix/guix#4770
Change-Id: I26e22639b2e19cdf8542262c52b24e394b7263ef
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:23 +01:00
Andreas Enge
5ff090a2b9 gnu: hdf4-alt: Disinherit from hdf4. 
* gnu/packages/maths.scm (hdf4-alt)[inherit]: Remove field.
[version, source, build-system, native-inputs, inputs, home-page,
synopsis, description, license]: Copy and paste from hdf4.
[arguments]: Adapt from hdf4 without changing the derivation.

Change-Id: I37cb97d7d97ea4426158b6970b98695d4f514332
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:22 +01:00
Andreas Enge
39c28edb9d gnu: Remove python-pyhdf. 
* gnu/packages/python-xyz.scm (python-pyhdf): Delete variable.

Change-Id: I74811a533b603524f44805078b6a57babe44f63f
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:21 +01:00
Andreas Enge
3c4b143249 gnu: Remove python-hdf4. 
* gnu/packages/python-xyz.scm (python-hdf4): Delete variable.

Change-Id: I763ef2f0aa528b36f933a02dddcfd8d5fbf51147
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:20 +01:00
Andreas Enge
2562c798a1 gnu: Remove gctp. 
* gnu/packages/maths.scm (gctp): Delete variable.

Fixes: guix/guix#4761
Change-Id: If04e27063eb68dcfbe1d0057f1b4e097c8de153f
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:19 +01:00
Andreas Enge
42bf1e75f4 gnu: Remove hdf-eos5. 
* gnu/packages/maths.scm (hdf-eos5): Delete variable.

Change-Id: Id4dbf13e73df2cbeadc6944a6a05711ef7a427cf
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:18 +01:00
Andreas Enge
c09c950658 gnu: Remove hdf-eos2. 
* gnu/packages/maths.scm (hdf-eos2): Delete variable.

Change-Id: I71e3ba4106b2d800439e4affc7b65d7b428bb160
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:18 +01:00
Hugo Buddelmeijer
c24223714e gnu: python-sphinx-autoapi: Update to 3.6.1. 
* gnu/packages/sphinx.scm (python-sphinx-autoapi): Update to 3.6.1.
[source]: Switch to git-fetch.
[arguments]<#:test-flags>: Disable test that requires network.
[propagated-inputs]: Remove python-unidecode.
[native-inputs]: Remove python-setuptools, python-sphinx, and python-wheel; add
nss-certs-for-test, python-beautifulsoup4, python-flit-core, and
python-pytest.

Change-Id: I7e3d71a71b2316953559cdd9cdc4ac8d157571f7
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:17 +01:00
Cayetano Santos
952213a987 gnu: python-brian2tools: Fix build. 
* gnu/packages/machine-learning.scm (python-brian2tools): Add missing input.
[propagated-inputs]: Add python-tables.

Change-Id: I974d3a4e1101272710e791ab92b9bc793d17f28e
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:16 +01:00
Hugo Buddelmeijer
2c7f573aa3 gnu: python-scanrbp: Include data in package. 
* gnu/packages/bioinformatics.scm (python-scanrbp): Fix build and include data.
[native-inputs]: Remove python-wheel.
<#:phases>: Add 'patchpath and 'copy-data phases. Replace 'check phase.

Change-Id: Ie61792f696f59383789cac89bf9f354f0ce1d188
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:15 +01:00
Nicolas Graves
c2a75f4031 gnu: python-domain-connect: Remove unused inputs. 
* gnu/packages/python-web.scm (python-domain-connect):
[native-inputs]: Remove python-wheel.
[propagated-inputs]: Remove python-publicsuffix.

Change-Id: I959e6239149c51a25d44ffc18ddad0b6ce9f9b63
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:14 +01:00
Nicolas Graves
94185c13d1 gnu: nml: Switch to pyproject. 
* gnu/packages/game-development.scm (nml):
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:phases>: Use tests? for 'check phase.
[native-inputs]: Add python-setuptools.

Change-Id: I4bcc1e586e0fd9e0cec749e85502661532485975
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:14 +01:00
Nicolas Graves
cfa2edf13b gnu: grokmirror: Update to 2.0.12. 
* gnu/packages/version-control.scm (grokmirror): Update to 2.0.12.
[source]<file-name>: Refresh it.
[build-system]: Switch to pyproject-build-system.
[arguments]: Improve style.
<#:phases>: Refresh phase 'install-manpages.
[native-inputs]: Add python-setuptools.

Change-Id: I9ccec338eda46227b44d5f5435e648978e7820fb
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:13 +01:00