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0861d4fff56697cc68b054ab080976767f48a1a7
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2319 Commits

Author SHA1 Message Date
Ricardo Wurmus 0861d4fff5 gnu: r-rsubread: Update to 2.8.2. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.2.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus cb30400097 gnu: r-ropls: Update to 1.26.4. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.26.4.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus 0c478f50f2 gnu: r-birewire: Update to 3.26.5. 
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.26.5.
[propagated-inputs]: Remove r-tsne; add r-rtsne.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus b446be46ba gnu: r-biocfilecache: Update to 2.2.1. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.2.1.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus 5576a98b6a gnu: r-massspecwavelet: Update to 1.60.1. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.60.1.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus 6f2d89fb40 gnu: r-atacseqqc: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.18.1.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus 88ed3fc340 gnu: r-genomicscores: Update to 2.6.1. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.6.1.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus e129f579f5 gnu: r-clusterprofiler: Update to 4.2.2. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.2.
 2022-04-14 11:29:39 +02:00
Ricardo Wurmus 21037105ac gnu: r-enrichplot: Update to 1.14.2. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.14.2.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus f8a38e8380 gnu: r-geoquery: Update to 2.62.2. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.2.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus fe6a8b4338 gnu: r-karyoploter: Update to 1.20.3. 
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.20.3.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus 84c0ec875c gnu: r-destiny: Update to 3.8.1. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.8.1.
[native-inputs]: Add r-knitr.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus d625f52bca gnu: r-chippeakanno: Update to 3.28.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.28.1.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus f7d7ba3613 gnu: r-diffbind: Update to 3.4.11. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.11.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus cf46f2c331 gnu: r-systempiper: Update to 2.0.8. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.8.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus 43053e08da gnu: r-stringdb: Update to 2.6.5. 
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.6.5.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus a3ddba54fd gnu: r-slingshot: Update to 2.2.1. 
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.2.1.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus 6dad28d221 gnu: r-rhdf5: Update to 2.38.1. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.38.1.
 2022-04-14 11:29:38 +02:00
Ricardo Wurmus 30027f837d gnu: r-regioner: Update to 1.26.1. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.26.1.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus 06d13cf4b0 gnu: r-msnbase: Update to 2.20.4. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.4.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus e586613384 gnu: r-mutationalpatterns: Update to 3.4.1. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.4.1.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus 78f7de977a gnu: r-limma: Update to 3.50.3. 
* gnu/packages/bioconductor.scm (r-limma): Update to 3.50.3.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus 68c1c989b6 gnu: r-genomicfeatures: Update to 1.46.5. 
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.46.5.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus 455636fecd gnu: r-genomeinfodb: Update to 1.30.1. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.30.1.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus 9000c8acc2 gnu: r-ensembldb: Update to 2.18.4. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.4.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus e4816bcaed gnu: r-biomart: Update to 2.50.3. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.3.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus ac67d0a467 gnu: r-annotationhub: Update to 3.2.2. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.2.2.
 2022-04-14 11:29:37 +02:00
Ricardo Wurmus f6bc281cd7 gnu: r-tricycle: Move out of annotation packages. 
* gnu/packages/bioconductor.scm (r-tricycle): Move definition out of the
section containing annotation packages.
 2022-04-14 06:55:20 +02:00
Ricardo Wurmus 8550976832 gnu: r-rbowtie: Fix build on architectures other than x86_64. 
* gnu/packages/bioconductor.scm (r-rbowtie)[arguments]: Disable use of popcnt
on systems other than x86_64.
 2022-04-12 16:00:01 +02:00
Ricardo Wurmus 418c6aff40 gnu: r-abn: Update to 2.7-0. 
* gnu/packages/bioconductor.scm (r-abn): Update to 2.7-0.
[propagated-inputs]: Add r-graph.
 2022-04-12 15:59:51 +02:00
Ricardo Wurmus ba5e32d9ce gnu: r-nmf: Update to 0.24.0. 
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.24.0.
 2022-04-12 15:59:51 +02:00
Mădălin Ionel Patrașcu 3704a7b897 gnu: Add r-tricycle. 
* gnu/packages/bioconductor.scm (r-tricycle): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-11 15:39:29 +02:00
Hong Li 730ac9ab85 gnu: Add r-stager. 
* gnu/packages/bioconductor.scm (r-stager): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-06 11:43:46 +02:00
Mădălin Ionel Patrașcu 0a5c2816ea gnu: Add r-cycombine. 
* gnu/packages/bioconductor.scm (r-cycombine): New variable.
 2022-03-28 17:04:29 +02:00
zimoun 8a0713aef2 gnu: Add r-diffcyt. 
* gnu/packages/bioconductor.scm (r-diffcyt): New variable.
 2022-03-15 22:55:37 +01:00
zimoun fdbc472bd1 gnu: Add r-scannotatr. 
* gnu/packages/bioconductor.scm (r-scannotatr): New variable.
 2022-03-15 22:50:42 +01:00
Ricardo Wurmus 5a809551dc gnu: Add r-ensdb-hsapiens-v86. 
* gnu/packages/bioconductor.scm (r-ensdb-hsapiens-v86): New variable.
 2022-03-10 13:44:58 +01:00
Ricardo Wurmus 6a6a514ef4 gnu: Add r-ensdb-mmusculus-v79. 
* gnu/packages/bioconductor.scm (r-ensdb-mmusculus-v79): New variable.
 2022-03-10 13:44:58 +01:00
Ricardo Wurmus 80b0e79629 gnu: r-abn: Update to 2.6-0. 
* gnu/packages/bioconductor.scm (r-abn): Update to 2.6-0.
[propagated-inputs]: Add r-doparallel and r-foreach.
 2022-01-23 14:01:31 +01:00
Ricardo Wurmus c486d20dc7 gnu: r-activepathways: Update to 1.0.4. 
* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.0.4.
 2022-01-23 14:01:31 +01:00
Ricardo Wurmus cadcbbaf65 gnu: r-bigmelon: Add r-knitr. 
* gnu/packages/bioconductor.scm (r-bigmelon)[native-inputs]: Add r-knitr.
 2022-01-21 18:45:27 +01:00
zimoun 65a7a73fd5 gnu: Add r-hgu133plus2-db. 
* gnu/packages/bioconductor.scm (r-hgu133plus2-db): New variable.
 2022-01-21 15:53:17 +01:00
zimoun a81e20b18a gnu: Add r-jetset. 
* gnu/packages/bioconductor.scm (r-jetset): New variable.
 2022-01-21 15:53:17 +01:00
zimoun 40042cca73 gnu: r-org-dr-eg-db: Update to 3.14.0. 
* gnu/packages/bioconductor.scm (r-org-dr-eg-db): Update to 3.14.0.
 2022-01-21 15:53:13 +01:00
Ricardo Wurmus 15b509e654 gnu: r-rbowtie: Add missing input. 
* gnu/packages/bioconductor.scm (r-rbowtie)[inputs]: Add zlib.
 2022-01-20 15:25:56 +01:00
Ricardo Wurmus 31a0b086da gnu: r-pasilla: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-pasilla)[source]: Use bioconductor-uri.
 2022-01-20 12:00:03 +01:00
Ricardo Wurmus 61a1c3f72d gnu: Add r-transcriptr. 
* gnu/packages/bioconductor.scm (r-transcriptr): New variable.
 2022-01-11 14:48:26 +01:00
Efraim Flashner c7ef7a0f84 gnu: r-sanssouci: Add source file-name. 
* gnu/packages/bioinformatics.scm (r-sanssourci)[source]: Add file-name
field.
 2022-01-07 11:27:34 +02:00
Ricardo Wurmus ad82f2a231 gnu: r-tximeta: Update to 1.12.4. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.12.4.
 2022-01-06 07:49:41 +01:00
Ricardo Wurmus cc16a10005 gnu: r-tcgabiolinks: Update to 2.22.2. 
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.22.2.
 2022-01-06 07:49:41 +01:00