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Code Activity
36,843 Commits 75 Branches 40 Tags
10483a64eebf753ae17695d3c027e5fefa0df644
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31283 Commits

Author SHA1 Message Date
Ricardo Wurmus
10483a64ee gnu: Add r-activity. 
* gnu/packages/cran.scm (r-activity): New variable.
 2018-11-14 15:13:20 +01:00
Ricardo Wurmus
3cef715a46 gnu: Add r-circular. 
* gnu/packages/cran.scm (r-circular): New variable.
 2018-11-14 15:13:20 +01:00
Ricardo Wurmus
08bf097a0b gnu: Add r-overlap. 
* gnu/packages/cran.scm (r-overlap): New variable.
 2018-11-14 15:13:20 +01:00
Ricardo Wurmus
acbf23da44 gnu: Add r-acdm. 
* gnu/packages/cran.scm (r-acdm): New variable.
 2018-11-14 15:13:20 +01:00
Ricardo Wurmus
ffdeda3ce0 gnu: Add r-acd. 
* gnu/packages/cran.scm (r-acd): New variable.
 2018-11-14 15:13:20 +01:00
Ricardo Wurmus
488dc4e1e2 gnu: Add r-abn. 
* gnu/packages/cran.scm (r-abn): New variable.
 2018-11-14 15:13:20 +01:00
Ricardo Wurmus
0c92f3734e gnu: Add r-rjags. 
* gnu/packages/cran.scm (r-rjags): New variable.
 2018-11-14 15:13:20 +01:00
Ricardo Wurmus
0bca8643a2 gnu: Add jags. 
* gnu/packages/statistics.scm (jags): New variable.
 2018-11-14 15:13:17 +01:00
Ricardo Wurmus
51b262f310 gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.4.4. 
* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Update to 3.4.4.
 2018-11-13 23:34:40 +01:00
Ricardo Wurmus
d34959b8d4 gnu: r-org-mm-eg-db: Update to 3.7.0. 
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.7.0.
 2018-11-13 23:34:40 +01:00
Ricardo Wurmus
314511b862 gnu: r-org-dm-eg-db: Update to 3.7.0. 
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.7.0.
 2018-11-13 23:34:39 +01:00
Ricardo Wurmus
76bd16bcf6 gnu: r-org-ce-eg-db: Update to 3.7.0. 
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.7.0.
 2018-11-13 23:34:39 +01:00
Ricardo Wurmus
fc7683fa30 gnu: r-org-hs-eg-db: Update to 3.7.0. 
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.7.0.
 2018-11-13 23:34:39 +01:00
Ricardo Wurmus
cb9e6ed702 gnu: r-genomationdata: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.14.0.
 2018-11-13 23:34:39 +01:00
Ricardo Wurmus
13e70f6304 gnu: r-go-db: Update to 3.7.0. 
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.7.0.
 2018-11-13 23:34:39 +01:00
Ricardo Wurmus
13a574652b gnu: r-genomeinfodbdata: Update to 1.2.0. 
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 1.2.0.
 2018-11-13 23:34:39 +01:00
Taegil Bae
3f995aaf21 gnu: spice-vdagent: Fix typo in desktop file. 
Fixes <https://bugs.gnu.org/33346>.

* gnu/packages/spice.scm (spice-vdagent)[arguments]: Fix typo in
'patch-spice-vdagent.desktop' phase.
 2018-11-13 15:26:30 -05:00
Alex Vong
c991806a7d gnu: ImageMagick: Update to 6.9.10-14. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-14.
 2018-11-14 03:09:37 +08:00
Leo Famulari
d540137509 gnu: libssh: Fetch source over HTTPS. 
* gnu/packages/ssh.scm (libssh)[source]: Use HTTPS URL.
 2018-11-13 11:43:35 -05:00
Leo Famulari
978d59737a gnu: direnv: Build with Go 1.9. 
* gnu/packages/shellutils.scm (direnv)[native-inputs]: Remove go.
[inputs]: Add go-1.9.
 2018-11-13 11:28:23 -05:00
Leo Famulari
021bf6af18 gnu: Poppler: Fix CVE-2018-19149. 
* gnu/packages/patches/poppler-CVE-2018-19149.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (poppler)[replacement]: New field.
(poppler/fixed): New variable.
(poppler-qt4, poppler-qt5): Use package/inherit.
 2018-11-13 11:28:23 -05:00
Leo Famulari
8263b9f71f gnu: certbot, python-acme: Update to 0.28.0. 
* gnu/packages/tls.scm (certbot, python-acme): Update to 0.28.0.
 2018-11-13 10:10:42 -05:00
Ludovic Courtès
3483f82413 gnu: guix: Update to f5a2724. 
* gnu/packages/package-management.scm (guix): Update to f5a2724.
 2018-11-13 15:44:25 +01:00
Ludovic Courtès
d3f75179e5 services: nscd: Add 'invalidate' and 'statistics' actions. 
* gnu/services/base.scm (nscd-action-procedure, nscd-actions): New
procedures.
(nscd-shepherd-service): Add 'modules' and 'actions' fields.
* gnu/tests/base.scm (run-basic-test)["nscd invalidate action"]
["nscd invalidate action, wrong table"]: New tests.
* doc/guix.texi (Services): Mention 'herd doc nscd action'.
(Base Services): Document the actions.
 2018-11-13 14:59:45 +01:00
Ludovic Courtès
190877748e services: mcron: Fix typo in comment. 
* gnu/services/mcron.scm (shepherd-schedule-action): Fix typo in comment.
 2018-11-13 14:59:45 +01:00
Oleg Pykhalov
155956449a gnu: restic: Fix build phase. 
* gnu/packages/backup.scm (restic)[arguments]: Set "HOME" environment variable
in build phase.
 2018-11-13 15:03:15 +03:00
Ricardo Wurmus
6018683683 gnu: c-toxcore: Fetch sources from git. 
* gnu/packages/messaging.scm (c-toxcore)[source]: Fetch from git.
 2018-11-13 10:51:41 +01:00
Rutger Helling
7fed5481fe gnu: wine-staging: Update to 3.20. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.20.
* gnu/packages/wine.scm (wine-staging): Update to 3.20.
 2018-11-13 10:24:42 +01:00
Julien Lepiller
0dd60c1c9b gnu: php: Update to 7.2.12. 
* gnu/packages/php.scm (php): Update to 7.2.12.
 2018-11-12 23:57:42 +01:00
Arun Isaac
e740a90228 gnu: youtube-dl: Update to 2018.11.07. 
* gnu/packages/video.scm (youtube-dl): Update to 2018.11.07.
 2018-11-12 22:09:12 +05:30
Efraim Flashner
53bcee9ea7 gnu: vifm: Update to 0.10. 
* gnu/packages/vim.scm (vifm): Update to 0.10.
 2018-11-12 12:37:00 +02:00
Pierre Neidhardt
5c4758415d gnu: go-github-com-aarzilli-golua: Fix for go-1.11. 
* gnu/packages/golang.scm (go-github-com-aarzilli-golua)[arguments]: Fix for go-1.11.
[native-inputs]: Remove lua.
[propagated-inputs]: Add lua.
 2018-11-12 10:31:23 +01:00
Pierre Neidhardt
46a4ae2212 gnu: go-github-com-wtolson-go-taglib: Fix tests and build for go-1.11. 
* gnu/packages/golang.scm (go-github-com-wtolson-go-taglib)[arguments]: Fix tests for go-1.11.
[native-inputs]: Remove pkg-config and taglib.
[propagated-inputs]: Add pkg-config and taglib.
 2018-11-12 10:30:10 +01:00
Pierre Neidhardt
66fa8f0f77 gnu: go-gopkg.in-asn1-ber.v1: Fix tests for go-1.11. 
* gnu/packages/syncthing.scm (go-gopkg.in-asn1-ber.v1): Fix tests for go-1.11.
 2018-11-12 10:29:43 +01:00
Pierre Neidhardt
d4780c8238 gnu: go-github-com-audriusbutkevicius-cli: Fix tests for go-1.11. 
* gnu/packages/syncthing.scm (go-github-com-audriusbutkevicius-cli): Fix tests for go-1.11.
 2018-11-12 10:29:37 +01:00
Pierre Neidhardt
46a37b5966 gnu: go-github-com-prometheus-common-expfmt: Fix tests for go-1.11. 
* gnu/packages/syncthing.scm (go-github-com-prometheus-common-expfmt): Fix tests for go-1.11.
 2018-11-12 10:29:31 +01:00
Pierre Neidhardt
9a65a05201 gnu: go: Update default to 1.11. 
* gnu/packages/golang.scm (go): Update default to 1.11.
 2018-11-12 10:28:46 +01:00
Ricardo Wurmus
5f9b38ba34 gnu: r-s4vectors: Update to 0.20.1. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.20.1.
 2018-11-11 23:13:48 +01:00
Ricardo Wurmus
06910a8689 gnu: r-rcmdcheck: Update to 1.3.2. 
* gnu/packages/cran.scm (r-rcmdcheck): Update to 1.3.2.
 2018-11-11 23:13:48 +01:00
Ricardo Wurmus
2a4c5877a9 gnu: r-ggpubr: Update to 0.1.9. 
* gnu/packages/cran.scm (r-ggpubr): Update to 0.1.9.
 2018-11-11 23:13:48 +01:00
Ricardo Wurmus
441cf11de1 gnu: r-dplyr: Update to 0.7.8. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.8.
 2018-11-11 23:13:48 +01:00
Ricardo Wurmus
41d2c26e67 gnu: r-rcpparmadillo: Update to 0.9.200.4.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.4.0.
 2018-11-11 23:13:48 +01:00
Ricardo Wurmus
23dd886a95 gnu: r-rtsne: Update to 0.15. 
* gnu/packages/statistics.scm (r-rtsne): Update to 0.15.
 2018-11-11 23:13:48 +01:00
Ricardo Wurmus
7865c8c460 gnu: r-lme4: Update to 1.1-19. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-19.
 2018-11-11 23:13:48 +01:00
Marius Bakke
a509b18087 gnu: webkitgtk@2.22: Adjust to documentation output. 
This is a follow-up to commit 0ead0b4d2c.

* gnu/packages/webkit.scm (webkitgtk)[arguments]: Remove hard coded file list.
(webkitgtk-2.22)[arguments]: Inherit phases using SUBSTITUTE-KEYWORD-ARGUMENTS.
 2018-11-11 22:47:06 +01:00
Ricardo Wurmus
aaf0e47f6d gnu: libtoxcore: Update to 0.0.0-2.bf69b54. 
* gnu/packages/messaging.scm (libtoxcore): Update to 0.0.0-2.bf69b54.
[native-inputs]: Add check.
 2018-11-11 20:51:51 +01:00
Ricardo Wurmus
e874f34d3f gnu: mumi: Update to 0.0.0-2.bfd96ce7. 
* gnu/packages/mail.scm (mumi): Update to 0.0.0-2.bfd96ce7.
 2018-11-11 20:51:51 +01:00
Leo Famulari
ec35067631 gnu: PostgreSQL: Update to 10.6 [fixes CVE-2018-16850]. 
* gnu/packages/databases.scm (postgresql): Update to 10.6.
 2018-11-11 14:10:03 -05:00
Pierre Neidhardt
0ead0b4d2c gnu: webkitgtk: Include documentation. 
* gnu/packages/webkit.scm (webkitgtk): Include documentation.
 2018-11-11 16:44:46 +01:00
Pierre Neidhardt
50ee7e93fc gnu: gtk-doc: Use local docbook-xsl. 
* gnu/packages/gtk.scm (gtk-doc): Use local docbook-xsl.
 2018-11-11 16:41:45 +01:00