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157f2e8732157ecb5d3084afbbb8fb2891cbf342
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161257 Commits

Author SHA1 Message Date
Ricardo Wurmus
157f2e8732 gnu: r-with-tests: Update to 4.5.2. 
* gnu/packages/statistics.scm (r-with-tests): Update to 4.5.2.

Change-Id: I6b2fdde29812d9a7088cbd339771d4ee03b62467
 2025-11-13 11:16:43 +01:00
Ricardo Wurmus
f824329b5a gnu: r-with-tests: Update to 4.5.1. 
* gnu/packages/statistics.scm (r-with-tests): Update to 4.5.1.

Change-Id: I0033a9827fa14b74659a2d037851ca1c52add701
 2025-11-13 11:16:43 +01:00
Ricardo Wurmus
6c02d882d2 gnu: r-bslib: Ensure that copied files are writable. 
* gnu/packages/cran.scm (r-bslib)[arguments]: Add phase 'fix-file-permissions.

Change-Id: Idccb1ef5a271f04f50e60b4a639c87bf2ac87b4e
 2025-11-13 11:16:43 +01:00
Ricardo Wurmus
fe07e80b00 gnu: r-sass: Ensure that copied files are writable. 
* gnu/packages/cran.scm (r-sass)[arguments]: Add phase 'fix-file-permissions.

Change-Id: If53ad242e5fcfa6951631ed7a1807a8930e92be3
 2025-11-13 11:16:43 +01:00
Ricardo Wurmus
a212e20f65 gnu: r-bslib: Enable tests. 
* gnu/packages/cran.scm (r-bslib)[arguments]: Enable most tests; add phase
'disable-bad-tests.
[native-inputs]: Add r-testthat and r-yaml.
[properties]: Record updater-extra-native-inputs.

Change-Id: I0221e3ee0dff309ba3f24e0d47b89efb59f7c9a1
 2025-11-13 11:16:43 +01:00
Simon Tournier
2e4f137a34 gnu: r-swne: Replace deprecated r-liger by r-rliger. 
* gnu/packages/statistics.scm (r-swne)[propagated-inputs]: Replace deprecated
r-liger by r-rliger.

Change-Id: If2aab2df369456518484edb3035e637ac0ca7c08
 2025-11-13 11:16:43 +01:00
Jonas Freimuth
7cba63307b gnu: r-import: Update home-page 
* gnu/packages/cran.scm (r-import)[home-page]: rticulate.org is
  no longer under the control of the package author. The official
  home page is now hosted at github.io. See
  <https://github.com/rticulate/import/issues/102#issuecomment-3376610296>
  for mor information.

Change-Id: I1513fcfea1ba8ad14813ad8929d06d3fc1fa36b0
Signed-off-by: Simon Tournier <zimon.toutoune@gmail.com>
 2025-11-13 11:16:43 +01:00
Jonas Freimuth
76fcd954b5 gnu: r-import: Update to 1.3.4. 
* gnu/packages/cran.scm (r-import): Update to 1.3.4.

Change-Id: I61781fae0b164dc1ddd1a2f2a10c0d5b4dae7398
Signed-off-by: Simon Tournier <zimon.toutoune@gmail.com>
 2025-11-13 11:16:43 +01:00
Ricardo Wurmus
227c9d1553 gnu: r-rcppparallel: Update to 5.1.11-1. 
* gnu/packages/cran.scm (r-rcppparallel): Update to 5.1.11-1.

Change-Id: Idb02209dc955a531ede00527fe0216a9ce5caafd
 2025-11-13 11:16:42 +01:00
Ricardo Wurmus
bea42cbfdb gnu: r-colorout: Update to 1.3-3. 
* gnu/packages/cran.scm (r-colorout): Update to 1.3-3.

Change-Id: I4d6a6094061fab98fee8155c76ca760f3ef15cbe
 2025-11-13 11:16:42 +01:00
Ricardo Wurmus
ad2e5277fe gnu: r-msnbase: Restore tests that failed because of libxml2. 
* gnu/packages/bioconductor.scm (r-msnbase)[arguments]: Restore two tests; fix
them by adding 'ensure-libxml2-works phase.

Change-Id: I555f19d5bc749cdd458af4b55a2a5a2e89c7d190
 2025-11-13 11:16:25 +01:00
Ricardo Wurmus
36c8e3803d gnu: r-msnbase: Disable two tests. 
* gnu/packages/bioconductor.scm (r-msnbase)[arguments]: Turn off two more
tests in 'delete-bad-tests phase.

Change-Id: I9bfa59a09db00e25c7b65cf4d642debfeb377f93
 2025-11-13 11:16:24 +01:00
Ricardo Wurmus
ee46654370 gnu: Remove r-spatstat-core. 
In 2022 spatstat.core was replaced with spatstat.explore and spatstat.model.

See https://spatstat.org/2022/11/10/spatstat.core-split.html

* gnu/packages/cran.scm (r-spatstat-core): New variable.

Change-Id: I2193626f0c2346f3b2793026059c5fbc97d2c4d2
 2025-11-13 11:16:24 +01:00
Ricardo Wurmus
2a3b2b6f91 gnu: r-skitools: Update to 0.0.0.9000-2.ba322dc. 
* gnu/packages/bioinformatics.scm (r-skitools): Update to 0.0.0.9000-2.ba322dc.

Change-Id: Ic006e4178ccaae57e7f4b25e07bb63db42585cb3
 2025-11-13 11:16:24 +01:00
Ricardo Wurmus
4436b2ee8e gnu: r-skitools: Disable one test. 
* gnu/packages/bioinformatics.scm (r-skitools)[arguments]: Add phase
'disable-bad-test.

Change-Id: I5c79aa28e343266a83522afe6635b3a714dadcc1
 2025-11-13 11:16:24 +01:00
Ricardo Wurmus
af1ca83cf9 gnu: r-sigfit: Fix build with GCC@14 
* gnu/packages/bioinformatics.scm (r-sigfit)[arguments]: Add phase
'gcc-14-compatibility.

Change-Id: Iaa00ecdf00dcf76330f3b1f904da6263b82e0617
 2025-11-13 11:16:24 +01:00
Ricardo Wurmus
d877aca055 gnu: r-sdmtools: Replace removed constants. 
R 4.5.0 removed previously deprecated definitions.

* gnu/packages/cran.scm (r-sdmtools)[arguments]: Add phase 'patch-constants.

Change-Id: I06125aeff8b7b1f219f8458b6c9aeeb696e33f11
 2025-11-13 11:16:24 +01:00
Ricardo Wurmus
f54cddf750 gnu: r-msnbase: Fix tests that failed because of libxml2. 
* gnu/packages/bioconductor.scm (r-msnbase)[arguments]: Fix tests
by adding 'ensure-libxml2-works phase.

Change-Id: I555f19d5bc749cdd458af4b55a2a5a2e89c7d190
 2025-11-13 11:16:24 +01:00
Ricardo Wurmus
32ea496b55 gnu: r-mzr: Restore tests that failed because of libxml2. 
* gnu/packages/bioconductor.scm (r-mzr)[arguments]: Restore two tests; fix
them by adding 'ensure-libxml2-works phase.

Change-Id: Ifeb3667449e862826a402b8c1ce37e4bcc92f21b
 2025-11-13 11:16:24 +01:00
Ricardo Wurmus
19b8400f8b gnu: r-xml: Use libxml2-with-zlib. 
* gnu/packages/cran.scm (r-xml)[inputs]: Replace libxml2 with libxml2-with-zlib.

Change-Id: I16de722bec362b87e0518e91de10e7a02afd8c71
 2025-11-13 11:16:24 +01:00
Ricardo Wurmus
a77f4fb279 gnu: Add libxml2-with-zlib. 
* gnu/packages/xml.scm (libxml2-with-zlib): New variable.

Change-Id: I2cc59d8f0758b4caf6f35dedabc9ee66f41ca11c
 2025-11-13 11:16:18 +01:00
Maxim Cournoyer
429e41739c gnu: python-libxml2: Reintroduce simplified deprecation. 
This is a fixup for commit c23b9a1 ("gnu: Remove libxml2-xpath0.") which
wrongly resolved a conflict.

* gnu/packages/xml.scm (python-libxml2): Reintroduce simplified deprecation.

Change-Id: Ia9e474329c0ec695e15571cbe99dbbb6ced0b3ab
 2025-11-13 15:12:12 +09:00
Maxim Cournoyer
c23b9a1017 gnu: Remove libxml2-xpath0. 
* gnu/packages/xml.scm (libxml2-xpath0): Delete variable.

Fixes: #3516
Fixes: <https://bugs.gnu.org/79572>
Change-Id: I8fd49d0ce1394fc4e55a148e15c23388934524a4
 2025-11-13 11:05:04 +09:00
jgart
e5b959f85f gnu: distrobox: Update to 1.8.2.1. 
* gnu/packages/containers.scm (distrobox): Update to 1.8.2.1.

Change-Id: Ic98a43b3b59136a74726df9dd23289e5750bb3b1
 2025-11-12 13:14:37 -06:00
jgart
f6125eb3b7 gnu: trealla: Update to 2.84.19. 
* gnu/packages/prolog.scm (trealla): Update to 2.84.19.

Change-Id: Ibff6a882d9d410d2e6fe79a96b5b30c6a9d4d22d
 2025-11-12 13:07:40 -06:00
Ludovic Courtès
bbd2d8c3d8 gnu: Remove references to deprecated ‘ruby-concurrent’. 
* gnu/packages/ruby-xyz.scm (ruby-i18n)[propagated-inputs]: Use
‘ruby-concurrent-ruby’ instead of ‘ruby-concurrent’; remove label.
(ruby-asciidoctor-pdf, ruby-hamster, ruby-tzinfo)
(ruby-sucker-punch, ruby-sentry-core, ruby-sentry): Use ‘ruby-concurrent-ruby’
instead of ‘ruby-concurrent’.

Change-Id: I38761047bd6605e43839b8c3e31ec34d4e2c93c4
 2025-11-12 18:34:07 +01:00
Ludovic Courtès
1956dd68ca gnu: rofi-pass: Remove reference to deprecated input. 
This is a followup to 79ff2b353a.

* gnu/packages/password-utils.scm (rofi-pass-wayland)[inputs]: Remove
‘replace’ clause.

Change-Id: Iee7393388e5d3396eb38cbc68a6cbe39623b4bfc
 2025-11-12 18:34:06 +01:00
Ludovic Courtès
c58dfea1c9 gnu: xfce4-volumed-pulse: Avoid deprecated input. 
* gnu/packages/xfce.scm (xfce4-volumed-pulse)[inputs]: Change ‘keybinder-3.0’
to ‘keybinder’.

Change-Id: I2cabc125f3e4ff87ecbf983c6c324a42feb4146d
 2025-11-12 18:34:06 +01:00
Ludovic Courtès
921ff0886b gnu: guile-fibers: Update to 1.4.2. 
* gnu/packages/guile-xyz.scm (guile-fibers-1.4): Update to 1.4.2.

Change-Id: I0741989846c9ad38d918ef73b072325e2358ecb0
 2025-11-12 18:34:06 +01:00
Ludovic Courtès
710a9f775e gnu: guile2.2-fibers: Update to 1.4.x. 
* gnu/packages/guile-xyz.scm (guile2.2-fibers): Inherit from ‘guile-fibers’,
not ‘guile-fibers-1.1’.

Change-Id: I848d4cd33f1d83552f6ca0bd83478d6bf94ad377
 2025-11-12 18:34:06 +01:00
Liliana Marie Prikler
94b6528cbd gnu: git: Fix disallowed references. 
This is a follow-up to ad461613d9.

* gnu/packages/version-control.scm (git)[#:disallowed-references]: Explicitly
list disallowed references instead of removing perl.

Fixes: guix/guix#4187 (Transformed git references disallowed perl)
 2025-11-12 07:30:20 -08:00
Efraim Flashner
8eed773a70 gnu: age-plugin-yubikey: Install manpage. 
* gnu/packages/rust-apps.scm (age-plugin-yubikey)[arguments]: Add a
phase to generate and install the manpage.

Change-Id: I449d26ec6376b4874b0fc7153533ba38ea71d5f9
 2025-11-12 16:34:55 +02:00
Ahmad Jarara
b5e5a807d1 gnu: Add age-plugin-yubikey. 
* gnu/packages/rust-apps.scm (age-plugin-yubikey): New variable.
* gnu/packages/rust-crates.scm (lookup-cargo-inputs): Add
age-plugin-yubikey.

Change-Id: I80e2a2f859f871567c72995b49ea3096b7be5fe8
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2025-11-12 16:22:05 +02:00
Matthias Riße
2008750c92 gnu: Add dumbpipe. 
* gnu/packages/rust-apps.scm (dumbpipe): New variable.
* gnu/packages/rust-crates.scm (lookup-cargo-inputs): Add dumbpipe.

Change-Id: I515c3fa0d9f75a46e75c640cae0ab42fcf4ac1b2
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2025-11-12 15:32:12 +02:00
Guillaume Le Vaillant
9af82e589f gnu: cl-usocket: Update to 0.8.9. 
* gnu/packages/lisp-xyz.scm (sbcl-usocket): Update to 0.8.9.

Change-Id: I697333c26eb18ce0fc234079c5dceb4676bc91c2
 2025-11-12 14:07:17 +01:00
Guillaume Le Vaillant
0f7000fc53 gnu: cl-simple-matrix: Update to 3.5. 
* gnu/packages/lisp-xyz.scm (sbcl-simple-matrix): Update to 3.5.

Change-Id: I6ab3723165c2afaedf4bfc4bc941ba3a772c3147
 2025-11-12 14:07:17 +01:00
Sharlatan Hellseher
38d7ce4749 gnu: Remove demlo and some of go-* dependencies. 
Development was stopped 7y ago, it depends on go-1.17 and fails to
build. This change removes Demlo and some of it's dependencies which are
not in use by others.

* gnu/packages/music.scm: (demlo, go-github-com-wtolson-go-taglib,
go-github-com-aarzilli-golua, go-github-com-stevedonovan-luar,
go-gitlab-com-ambrevar-golua-unicode): Delete variables.

Fixes: guix/guix#3444
Change-Id: I19c530f8a37b6314eb24678a179faae3e961145a
 2025-11-12 12:32:42 +00:00
Sharlatan Hellseher
7f957bbacf gnu: Remove hangups. 
Google Hangouts API has been shut down in November 2022, see:
<https://github.com/tdryer/hangups/issues/533>.

* gnu/packages/messaging.scm (hangups): Delete variable.

Fixes: guix/guix#3460
Change-Id: Ic54b0de9645da121096b0548a3f54d271057eb52
 2025-11-12 12:32:41 +00:00
Sharlatan Hellseher
8528afb3ca gnu: Add python-filelock-next. 
* gnu/packages/python-xyz.scm (python-filelock-next): New variable.

Change-Id: I831dcdf7543a723dc7fd0cd5603b23002ccf0501
 2025-11-12 12:32:41 +00:00
wvlab
5a232433c3 gnu: waypipe: Update to 0.10.5. 
* gnu/packages/freedesktop (waypipe): Update to 0.10.5.
[source]: Add snippet to fix cargo flags.
[arguments]: Add a phase to add some phases from the cargo-build-system.
[native-inputs]: Add rust, rust:cargo, rust-bindgen-cli, shaderc, clang,
and vulkan-headers.
[inputs]: Add vulkan-loader and zstd:lib and cargo inputs for waypipe.
* gnu/packages/rust-crates.scm (lookup-cargo-inputs): Add waypipe.

Change-Id: Ie6592a2ab5602e420777a6e7eab505e143743c8d
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2025-11-12 14:26:43 +02:00
Patrick Norton
e8c7d302d2 gnu: qtmips: Update to 0.8.1. 
* gnu/packages/emulators.scm (qtmips): Update to 0.8.1.
[arguments]: Adjust accordingly.

Closes: guix/guix#4176
Change-Id: I1537d9154547a7faaba212ca457b35d04c2e742d
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2025-11-12 20:23:23 +08:00
Lee Thompson
3e8aa64c07 gnu: Add font-kawkab-mono. 
* gnu/packages/fonts.scm (font-kawkab-mono): New variable.

Closes: guix/guix#4195
Change-Id: Idb667ebf651bfcc3db2708134c4213142d4db6e0
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2025-11-12 20:10:03 +08:00
Alexis Simon
c8e8ca5f37 gnu: typst: Update to 0.14.0. 
* gnu/packages/rust-apps.scm (typst): Update to 0.14.0.
[arguments]<#:rust>: Use rust-1.88.
* gnu/packages/rust-crates.scm (lookup-cargo-inputs)[typst]: Update entry.
[rust-syntect-5]: Rename to rust-syntect-5.2.
[rust-syntect-5.3]: New entry.
* gnu/packages/rust-sources.scm (rust-hypher-0.1): Update to 0.1.6.
(rust-syntect-5): Rename to rust-syntect-5.2.
[inputs]: Rename cargo-inputs rust-syntect-5 to rust-syntect-5.2.
(rust-syntect-5.3): New variable.

Change-Id: I29180b456e9c49216f16bc7227ac60820bbf2c2b
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2025-11-12 13:22:25 +02:00
Sughosha
9e18e2c8e2 gnu: knights: Update description. 
* gnu/packages/kde-games.scm (knights)[description]: Mention that this package
is part of the KDE games module.

Change-Id: Ic89549d291bb4058f3ff7c08efc270f576e6c43c
 2025-11-12 16:00:22 +05:30
Lilah Tascheter
7fb7d071cf gnu: services: Add mollysocket service. 
* gnu/services/messaging.scm (ms-format,ms-serialize-string,
ms-serialize-integer, ms-serialize-boolean,
ms-serialize-list-of-strings, mollysocket-shepherd-service,
mollysocket-account-service, mollysocket-activation-service): New
procedures.
(mollysocket-configuration): New configuration.
(mollysocket-service-type): New variable.
* doc/guix.texi (Messaging Services)[Mollysocket Service]: New section.

Change-Id: I87d57b69a6d8fa8841a95add084aa383385de4c7
 2025-11-12 12:20:22 +02:00
Lilah Tascheter
368d2d9e0f gnu: Add mollysocket. 
* gnu/packages/rust-apps.scm (mollysocket): New variable.
* gnu/packages/rust-crates.scm: Import mollysocket deps.

Change-Id: Ifcfbf6078bf07f4f429bb0eeea2e61d5afba2c82
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2025-11-12 12:20:22 +02:00
Zheng Junjie
e7ff186602 gnu: alacritty: Update to 0.16.1. 
* gnu/packages/terminals.scm (alacritty): Update to 0.16.1.
* gnu/packages/rust-crates.scm (lookup-cargo-inputs) [alacritty]: Update
entry.

Change-Id: I2d4777275ea9e36ce1601de8b377c62d58e455a2
 2025-11-12 11:58:53 +02:00
Janneke Nieuwenhuizen
9acac72858 gnu: dezyne: Update to 2.19.2. 
* gnu/packages/dezyne.scm (dezyne): Update to 2.19.2.

Change-Id: Ie72f67fc93834d207866908291a3a551a934c7e8
 2025-11-12 09:38:28 +01:00
Sughosha
b1c1e42215 gnu: kde-games: Update to 25.08.2. 
* gnu/packages/kde-games.scm (kde-games)[version]: Use the version number of
libkdegames.

Change-Id: I9b30677b875a56c30fe326aee6fe590a69b1f64a
 2025-11-12 12:13:30 +05:30
Sughosha
0d6cafa3f1 gnu: jamesdsp: Update to 2.7.0-0.53cf098. 
* gnu/packages/audio.scm (jamesdsp): Update to 2.7.0-0.53cf098.
[arguments]<#:phases>: Replace 'build, 'check and 'install phases with those
from gnu-build-system.
[source]<patches>: Remove "jamesdsp-fix-bulid-on-pipewire-1.4.0.patch".
* gnu/local.mk: Deregister it.

Change-Id: I4d8809cc32cc24a3dc14f9cc465587e3cb0f61c5
 2025-11-12 11:28:26 +05:30