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17526fa4edf9409a77aea3cb1c1fb65c5770f3a6
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171787 Commits

Author SHA1 Message Date
Ricardo Wurmus
17526fa4ed gnu: r-biocmake: Replace custom phase with SKIPPED-TESTS argument. 
* gnu/packages/bioconductor.scm (r-biocmake)[arguments]: Remove phase
'disable-bad-tests; specify #:skipped-tests instead.

Change-Id: I53f6872b261fa004967b0a332a8c3c461d010a39
 2026-04-02 07:37:26 +02:00
Ricardo Wurmus
17864135c3 gnu: r-coregx: Enable all tests. 
* gnu/packages/bioconductor.scm (r-coregx)[arguments]: Remove phase
'disable-bad-tests.

Change-Id: I84c99eb508a02bc86b23c9567ffc4af375987c44
 2026-04-02 07:37:26 +02:00
Ricardo Wurmus
31f5309cad gnu: r-metabocoreutils: Remove obsolete build phase. 
* gnu/packages/bioconductor.scm (r-metabocoreutils)[arguments]: Remove phase
'testthat-compatibility.

Change-Id: Id36f100ae3ed9ccd7c5841f61e11b165164f6d51
 2026-04-02 07:37:26 +02:00
Ricardo Wurmus
873620fbbd gnu: r-phyloseq: Remove obsolete build phase. 
* gnu/packages/bioconductor.scm (r-phyloseq)[arguments]: Remove phase
'testthat-compatibility.

Change-Id: I1fad7dbde4c97113553e613a0aa794c249a428a6
 2026-04-02 07:37:25 +02:00
Ricardo Wurmus
ed4dba483a gnu: r-ballgown: Remove obsolete build phase. 
* gnu/packages/bioconductor.scm (r-ballgown)[arguments]: Remove phase
'testthat-compatibility.

Change-Id: I8e07774d6e3580356fab6d690935d22f1fa6b761
 2026-04-02 07:37:25 +02:00
Ricardo Wurmus
dd7baf9aff gnu: r-duckdb: Update to 1.5.1. 
* gnu/packages/duckdb.scm (r-duckdb): Update to 1.5.1.
[native-inputs]: Add r-sf and r-wk.

Change-Id: Iade830c33439340203d150b105465adc762e2ee0
 2026-04-02 07:37:25 +02:00
Ricardo Wurmus
37151442ab gnu: r-gstat: Update to 2.1-6. 
* gnu/packages/cran.scm (r-gstat): Update to 2.1-6.

Change-Id: I916aa671b31d022d8d532c1432a2efac6b101f68
 2026-04-02 07:37:25 +02:00
Ricardo Wurmus
1a817ee709 gnu: r-vroom: Update to 1.7.1. 
* gnu/packages/cran.scm (r-vroom): Update to 1.7.1.

Change-Id: I466820cf4b42cbd25cd8e8d859b974c66194165e
 2026-04-02 07:37:25 +02:00
Ricardo Wurmus
72f14783f9 gnu: r-randomforestsrc: Update to 3.6.0. 
* gnu/packages/cran.scm (r-randomforestsrc): Update to 3.6.0.

Change-Id: Icd2cd67f864ad516b165e87117d0244c81d7790f
 2026-04-02 07:37:25 +02:00
Ricardo Wurmus
ad06932a9d gnu: r-spatstat-linnet: Update to 3.5-0. 
* gnu/packages/cran.scm (r-spatstat-linnet): Update to 3.5-0.

Change-Id: I17673a5bcbe121596a00f2864f01a31a426d0c86
 2026-04-02 07:37:25 +02:00
Ricardo Wurmus
f8436eda27 gnu: r-spatstat-model: Update to 3.7-0. 
* gnu/packages/cran.scm (r-spatstat-model): Update to 3.7-0.

Change-Id: Iba25603d6b68f0a6d9ec59cb2f81bad6f507d02b
 2026-04-02 07:37:25 +02:00
Ricardo Wurmus
c5c5f7837e gnu: r-isocodes: Update to 2026.03.28. 
* gnu/packages/cran.scm (r-isocodes): Update to 2026.03.28.

Change-Id: I7437282a2058cfb37308759fe90e578e5db436eb
 2026-04-02 07:37:24 +02:00
Ricardo Wurmus
344acde48b gnu: r-terra: Update to 1.9-11. 
* gnu/packages/cran.scm (r-terra): Update to 1.9-11.

Change-Id: I5b7e900b034d7a20d31b9dd5d08e880992b1c77f
 2026-04-02 07:37:24 +02:00
Ricardo Wurmus
a8063066bf gnu: r-clue: Update to 0.3-68. 
* gnu/packages/cran.scm (r-clue): Update to 0.3-68.

Change-Id: I2189ede33a63be70c61f36f761730248b6790ad2
 2026-04-02 07:37:24 +02:00
Ricardo Wurmus
e79c7394c7 gnu: r-rex: Update to 1.2.2. 
* gnu/packages/cran.scm (r-rex): Update to 1.2.2.
[propagated-inputs]: Remove r-lazyeval; add r-withr.
[native-inputs]: Add r-magrittr.

Change-Id: I149af3974589956a439e52115e494617496e5cbd
 2026-04-02 07:37:24 +02:00
Ricardo Wurmus
0edc7322e6 gnu: r-arrow: Update to 23.0.1.2. 
* gnu/packages/cran.scm (r-arrow): Update to 23.0.1.2.

Change-Id: I303367d5c42fa90a5663ed7d0ea54de171bc8851
 2026-04-02 07:37:24 +02:00
Ricardo Wurmus
f964eb065b gnu: r-mlbench: Update to 2.1-8. 
* gnu/packages/cran.scm (r-mlbench): Update to 2.1-8.

Change-Id: I26306f81485d5d60b63dedc41ee0c5f410281269
 2026-04-02 07:37:24 +02:00
Ricardo Wurmus
b5d1aa4ac9 gnu: r-huge: Update to 1.5.1. 
* gnu/packages/cran.scm (r-huge): Update to 1.5.1.

Change-Id: I80947d7ed3235192153c773f48cc06eb8c0fe9a2
 2026-04-02 07:37:24 +02:00
Ricardo Wurmus
c284b0da06 gnu: r-epi: Update to 2.64. 
* gnu/packages/cran.scm (r-epi): Update to 2.64.

Change-Id: I9c271fd48e5c95c8ca512339b9bdcc2309e6eb5a
 2026-04-02 07:37:24 +02:00
Ricardo Wurmus
928537b260 gnu: r-admisc: Update to 0.40. 
* gnu/packages/cran.scm (r-admisc): Update to 0.40.

Change-Id: Ia53cf5b29f2ffa3778bc56532e9512a91d27a281
 2026-04-02 07:37:24 +02:00
Ricardo Wurmus
097563d78f gnu: r-renv: Update to 1.2.0. 
* gnu/packages/cran.scm (r-renv): Update to 1.2.0.

Change-Id: I0510ac7c2cb3771733348e578b503b347b74dc3e
 2026-04-02 07:37:23 +02:00
Ricardo Wurmus
0e281cdd5b gnu: r-arules: Update to 1.7.14. 
* gnu/packages/cran.scm (r-arules): Update to 1.7.14.

Change-Id: Idb02b8ddb5beb0603f36e630e817069e120e938d
 2026-04-02 07:37:23 +02:00
Ricardo Wurmus
0c1bd45ebc gnu: r-catdap: Update to 1.3.7-4. 
* gnu/packages/cran.scm (r-catdap): Update to 1.3.7-4.

Change-Id: I3136768e7ddf87f552cd7950c6cf407ff17fb589
 2026-04-02 07:37:23 +02:00
Ricardo Wurmus
5db5fb1c11 gnu: r-simdesign: Update to 2.25. 
* gnu/packages/cran.scm (r-simdesign): Update to 2.25.
[propagated-inputs]: Add r-mirai and r-qs2.

Change-Id: Ife1ed3769ac2f8f712a9a14ba4da8d21fb41eee1
 2026-04-02 07:37:23 +02:00
Ricardo Wurmus
4726cb216a gnu: r-tseries: Update to 0.10-61. 
* gnu/packages/cran.scm (r-tseries): Update to 0.10-61.

Change-Id: Ib42977723f449bc176f2c6fe4bc1202641e22ff5
 2026-04-02 07:37:23 +02:00
Ricardo Wurmus
20c3b4e7f0 gnu: r-nlme: Update to 3.1-169. 
* gnu/packages/cran.scm (r-nlme): Update to 3.1-169.

Change-Id: I394de81fa2e46855b2f03f3d248dab7aba253fa6
 2026-04-02 07:37:23 +02:00
Ricardo Wurmus
052b848afd gnu: r-n2r: Update to 1.0.5. 
* gnu/packages/cran.scm (r-n2r): Update to 1.0.5.
[propagated-inputs]: Add r-bh.

Change-Id: Ib32064e870c2e6b9e64cf560a94f6406b29703a8
 2026-04-02 07:37:23 +02:00
Ricardo Wurmus
cc039c0f79 gnu: r-tinytex: Update to 0.59. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.59.

Change-Id: I9e462711fa1ff1f07879acddf395be0cd462bd8d
 2026-04-02 07:37:23 +02:00
Ricardo Wurmus
e15b88ddf3 gnu: r-rcpproll: Update to 0.3.2. 
* gnu/packages/cran.scm (r-rcpproll): Update to 0.3.2.
[native-inputs]: Add r-zoo.

Change-Id: I1ed75a398ba22e715a5583a07a753a87ccf2b7e2
 2026-04-02 07:37:22 +02:00
Ricardo Wurmus
d819dea541 gnu: r-party: Update to 1.3-20. 
* gnu/packages/cran.scm (r-party): Update to 1.3-20.

Change-Id: I3f4ab036332ecc26983c708bea9a8331506b7474
 2026-04-02 07:37:22 +02:00
Ricardo Wurmus
dd2f6f3eff gnu: r-relations: Update to 0.6-17. 
* gnu/packages/cran.scm (r-relations): Update to 0.6-17.

Change-Id: Iac7d6892782b7b2a634cdd62131622bbe005eb27
 2026-04-02 07:37:22 +02:00
Ricardo Wurmus
9fe4a6e471 gnu: r-secretbase: Update to 1.2.1. 
* gnu/packages/cran.scm (r-secretbase): Update to 1.2.1.

Change-Id: I6acc53b2950ff3b19ad58677a8f4ae3219c3c263
 2026-04-02 07:37:22 +02:00
Ricardo Wurmus
3cfe4ff814 gnu: r-tkrplot: Update to 0.0-32. 
* gnu/packages/cran.scm (r-tkrplot): Update to 0.0-32.

Change-Id: I029cfc8187ca6e4a820aa5031f8096b4badb7161
 2026-04-02 07:37:22 +02:00
Ricardo Wurmus
bc68c3ab94 gnu: r-mumin: Update to 1.48.19. 
* gnu/packages/cran.scm (r-mumin): Update to 1.48.19.

Change-Id: I909e9e0b6ceb32458aad8de6e6cda0c239091f37
 2026-04-02 07:37:22 +02:00
Ricardo Wurmus
1872070da1 gnu: r-swagger: Update to 5.32.1. 
* gnu/packages/cran.scm (r-swagger): Update to 5.32.1.
[native-inputs]: Add r-jsonlite.

Change-Id: I526a2307cbe19520bd35ae5d5b4bbb35736d0b21
 2026-04-02 07:37:22 +02:00
Ricardo Wurmus
4a530eba7b gnu: r-simr: Update to 1.0.9. 
* gnu/packages/cran.scm (r-simr): Update to 1.0.9.
[propagated-inputs]: Add r-reformulas.

Change-Id: I20beba132fd93abe77051fd5263005a19d2d975a
 2026-04-02 07:37:22 +02:00
Ricardo Wurmus
95accbc78f gnu: r-venn: Update to 1.13. 
* gnu/packages/cran.scm (r-venn): Update to 1.13.

Change-Id: I9a15a630386f75c1abfa432c5147207885f21e83
 2026-04-02 07:37:21 +02:00
Ricardo Wurmus
ce75a3c411 gnu: r-rpart: Update to 4.1.27. 
* gnu/packages/cran.scm (r-rpart): Update to 4.1.27.

Change-Id: I9564a9b01a8655cefa79be842eeea7c08b48218f
 2026-04-02 07:37:21 +02:00
Ricardo Wurmus
213c1205f5 gnu: r-rmarkdown: Update to 2.31. 
* gnu/packages/cran.scm (r-rmarkdown): Update to 2.31.

Change-Id: I44e1bcc16fa763264ce0329d434f505980d98966
 2026-04-02 07:37:21 +02:00
Ricardo Wurmus
4cdc295ccd gnu: r-pmml: Update to 2.6.0. 
* gnu/packages/cran.scm (r-pmml): Update to 2.6.0.

Change-Id: I30fa5e147d28c4babcbc21011376141cdee9fdb0
 2026-04-02 07:37:21 +02:00
Ricardo Wurmus
7969f5281f gnu: r-isva: Update to 1.10. 
* gnu/packages/bioconductor.scm (r-isva): Update to 1.10.

Change-Id: I40aee88fee31b47d18526f5ce68fee0b76ab22c7
 2026-04-02 07:37:21 +02:00
Ricardo Wurmus
217b643316 gnu: r-irace: Update to 4.4.1. 
* gnu/packages/cran.scm (r-irace): Update to 4.4.1.
[arguments]: Skip one test.
[native-inputs]: Add r-highr.

Change-Id: I682d70d68bbf2566a3628138d1291a06810fa30a
 2026-04-02 07:37:21 +02:00
Ricardo Wurmus
9d273d6173 gnu: r-archivist: Update to 2.3.9. 
* gnu/packages/cran.scm (r-archivist): Update to 2.3.9.
[native-inputs]: Remove r-testthat.

Change-Id: If56a217240aa782dfeebeccca77a677e1e03fa14
 2026-04-02 07:37:21 +02:00
Ricardo Wurmus
fa4363ee83 gnu: r-progressr: Update to 0.19.0. 
* gnu/packages/cran.scm (r-progressr): Update to 0.19.0.

Change-Id: I5f612300649e9f8d1bd8c7e6e76cb8e824fefa78
 2026-04-02 07:37:21 +02:00
Ricardo Wurmus
1222228405 gnu: r-lamw: Update to 2.2.7. 
* gnu/packages/cran.scm (r-lamw): Update to 2.2.7.
[native-inputs]: Add r-testthat.

Change-Id: I80da1f9f62430e571da40a02f439e5b0d1afba02
 2026-04-02 07:37:21 +02:00
Ricardo Wurmus
b9acb40b90 gnu: r-sourcetools: Update to 0.1.7-2. 
* gnu/packages/cran.scm (r-sourcetools): Update to 0.1.7-2.
[native-inputs]: Remove r-testthat.

Change-Id: I997d9111dc5074b88b9e4c70f557d331df5938b6
 2026-04-02 07:37:20 +02:00
Ricardo Wurmus
02e7f5bd3c gnu: r-gwascat: Update to 2.42.1. 
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.42.1.
[propagated-inputs]: Remove r-snpstats.

Change-Id: I169b53b7320b89bfd24e19f745752d003e7eba38
 2026-04-02 07:37:20 +02:00
Ricardo Wurmus
7ff3cecc72 gnu: r-scater: Update to 1.38.1. 
* gnu/packages/bioconductor.scm (r-scater): Update to 1.38.1.

Change-Id: I7ccc3a0c9b5377b4196e7806cba863c691895fa0
 2026-04-02 07:37:20 +02:00
Ricardo Wurmus
cadd11f0cd gnu: r-beadarray: Update to 2.60.1. 
* gnu/packages/bioconductor.scm (r-beadarray): Update to 2.60.1.

Change-Id: Ie6b49f29346bc7de56484fcf273ff089868d8736
 2026-04-02 07:37:20 +02:00
Ricardo Wurmus
e128f915f2 gnu: r-biocviews: Update to 1.78.1. 
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.78.1.

Change-Id: I660d44487d25d7c19ad6cff239024bc5e829599c
 2026-04-02 07:37:20 +02:00