This reverts commit a7db92d9b3, this time with
the more careful command, to avoid a world rebuild:
grep -rl --exclude-dir=build --exclude-dir=patches --exclude=ld-wrapper.in \
--exclude=sitecustomize.py --exclude=guix-emacs.el maxim.cournoyer@gmail.com |
xargs sed -i 's/maxim.cournoyer@gmail.com/maxim@guixotic.coop/g'
Change-Id: I0871f5cf9ace79e34e78e24154d0da6ea95a3a91
The change was automated via:
git grep -l maxim.cournoyer@gmail.com |
xargs sed -i 's/maxim.cournoyer@gmail.com/maxim@guixotic.coop/g'
* .mailmap: New entry.
Change-Id: Iaa88b1e51c94159c49138fb43910badb990eb169
* gnu/packages/image-processing.scm (paraview): Update to 6.0.0.
[source]<snippet>: Update list of bundled VTK libraries in comments. glew is
no longer bundled so do not remove it.
[arguments]<#:configure-flags>: Use a relative directory in
"CMAKE_INSTALL_DOCDIR" and
"PARAVIEW_GENERATED_DOCUMENTATION_OUTPUT_DIRECTORY". Remove
"-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON".
[inputs]: Replace fmt with fmt-11. Remove glew.
* gnu/packages/simulation.scm (openfoam-org)[native-inputs]: Replace fmt with
fmt-11. Remove glew.
Change-Id: Ifa005f33dd04c0119008726c11f3b32efba28b0d
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
The dolfin interface to sundials requires a header file 'cvode_impl.h'
which is not available in sundials v>5.4.0.
* gnu/packages/simulation.scm (fenics-dolfin)
[inputs]: Remove SUNDIALS-OPENMPI.
[arguments]<#:configure-flags>: Disable SUNDIALS feature.
<#:phases>: Do not set SUNDIALS_DIR variable.
Signed-off-by: Andreas Enge <andreas@enge.fr>
* gnu/packages/patches/fenics-dolfin-integer-types.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register new patch.
* gnu/packages/simulation.scm (fenics-dolfin)[source]: Use new patch.
Signed-off-by: Andreas Enge <andreas@enge.fr>
* gnu/packages/simulation.scm (python-dolfin-adjoint): Fix build.
[arguments]: Set pytest import mode. Update list of failing tests.
[native-inputs]: Add python-setuptools and python-wheel, needed by
pyproject-build-system.
Signed-off-by: Andreas Enge <andreas@enge.fr>
* gnu/packages/simulation.scm (fenics): Run guix style, improve
formatting.
[arguments] <phases>: Remove test module references to expired numpy
aliases in the 'pre-check' phase. Use '--deselect' instead of '--ignore'
to skip a test in the 'check' phase. Add a FIXME note to enable reading
and writing files in the binary HDF5 format.
Signed-off-by: Andreas Enge <andreas@enge.fr>
* gnu/packages/patches/fenics-dolfin-hdf5-version-check.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register new patch.
* gnu/packages/simulation.scm (fenics-dolfin): Run guix style.
[source]: Use new patch.
[arguments] <phases>: Update 'pre-check' comment.
Add 'demo_stokes-iterative_mpi' test to list of skipped tests.
Change-Id: I8ec4534d96af6726fcfd3a601d34b109d06c4ca6
Signed-off-by: Andreas Enge <andreas@enge.fr>
This package is quite dated and upstream no longer maintains it: "This
repository was archived by the owner on Feb 21, 2022. It is now
read-only." <https://bitbucket.org/fenics-project/fiat> ->
<https://github.com/FEniCS/fiat> while providing a new refactored
fork <https://github.com/firedrakeproject/fiat>.
* gnu/packages/simulation.scm (python-fenics-fiat)
[build-system]: Swap to pyproject-build-system.
[arguments] <test-flags>: Move tests skip logic here.
<phases>: Use default 'check.
[native-inputs]: Add python-setuptools and python-wheel.
[description]: Adjust fill column indentation.
Change-Id: Ifea4430b1e49491f1b145702ec6df58153a9c809
* gnu/packages/simulation.scm (python-fenics-dijitso):
[build-system]: Move to pyproject-build-system.
[arguments]<#:phases>: Rewrite check phase replacement to care about
.guix-pytest.
Change-Id: I3383f4078fbb0100e6d8257d7d84785b953ab0cf
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu/packages/simulation.scm (python-dolfin-adjoint) [arguments]:
<#:test-flags>: Explicitly ignore failing tests during collection phase
and some tests during runt test phase.
<#:phases>: Change HOME env to GETCWD in 'set-environment-variable phase.
Change-Id: Ibee5e45052a3828b4522752a87c97367d7caec65
* gnu/packages/simulation.scm (python-dolfin-adjoint): Move inputs after
arguments.
[description]: Place it on a new line, fix indentation.
Change-Id: I3d971e48b4072258ed0b41af5c202e64af9de8f3
So far the source was taken from an auto-generated, unstable tarball at
github.com. This fixes that.
* gnu/packages/simulation.scm (openfoam-org)[source]: Switch to
'git-fetch'.
[arguments]: Add 'rename-self' phase.
Give the python variant a different name, and fix the build.
* gnu/packages/simulation.scm (python-open-simulation-interface)[name]: Set.
[propagated-inputs]: Add python-pyyaml and python-protobuf.
* gnu/packages/patches/esmini-no-clutter-log.patch: New file.
* gnu/packages/patches/esmini-use-pkgconfig.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them here.
* gnu/packages/simulation.scm (esmini): New variable.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
