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130041 Commits

Author SHA1 Message Date
Ricardo Wurmus 1ac7cf8174 gnu: r-rmarkdown: Update to 2.29. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.29.

Change-Id: Iae668df553224dced65f57edf40607c75ea89df4
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus 93b254153a gnu: r-gdtools: Update to 0.4.1. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.4.1.

Change-Id: I58d3f0d591a2494f4b2bb684faf25619c4a73734
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus 5fdb06d143 gnu: r-spatstat-utils: Update to 3.1-1. 
* gnu/packages/cran.scm (r-spatstat-utils): Update to 3.1-1.

Change-Id: I86f4ada6967fb5de18a30b25bf80facc0f1e1b5a
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus bae7ddc1fb gnu: r-reformulas: Update to 0.4.0. 
* gnu/packages/cran.scm (r-reformulas): Update to 0.4.0.

Change-Id: Iec4b24cd94a77bbacf03b268d2beb2d746515aeb
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus 1fcaa80a02 gnu: r-raceid: Update to 0.3.7. 
* gnu/packages/cran.scm (r-raceid): Update to 0.3.7.

Change-Id: Ia97c1892d793462097344e33b7f28529ca4ebc6e
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus 083ea05485 gnu: r-tinytex: Update to 0.54. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.54.

Change-Id: Ia87787d313862f50c136f081b1241fbed1916b84
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus fa5f5fee76 gnu: r-rcpp: Update to 1.0.13-1. 
* gnu/packages/cran.scm (r-rcpp): Update to 1.0.13-1.

Change-Id: I7c6ffe5d910d3a4dbe50469bc0b1f843eea62d75
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus 00ddfcb8de gnu: r-collapse: Update to 2.0.17. 
* gnu/packages/cran.scm (r-collapse): Update to 2.0.17.

Change-Id: Idd32484328b1f216041ca906ae9fef2cdb43ebe4
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus b0dab9364c gnu: r-changepoint: Update to 2.3. 
* gnu/packages/cran.scm (r-changepoint): Update to 2.3.

Change-Id: I02464b838494a19fe581f3e38c18193cf547e992
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus 3c43fa1eae gnu: r-with-tests: Update to 4.4.2. 
* gnu/packages/statistics.scm (r-with-tests): Update to 4.4.2.
[inputs]: Add libdeflate.

Change-Id: I3609127df545b419e1bd840c52dcfd1891cbe7c5
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus 34eed54946 gnu: r-phyloseq: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.50.0.

Change-Id: I16741509d1bd81e7f887009c53b9ed4cf3267e2d
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus 620d1e268b gnu: r-tximeta: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.24.0.

Change-Id: I5c28d115ac06e6f0eb17667f6432cb98aec53c8e
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus 9fb6bd74ab gnu: r-tricycle: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.14.0.

Change-Id: I94bb99f7d2258efc3a42cdffcebda2a8ae5f2a67
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus b73bca9931 gnu: r-tcgabiolinks: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.34.0.

Change-Id: I1ab4117cff1e7d8fdd96cc93a109304adb24be25
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus dad6eb47b1 gnu: r-biscuiteer: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.20.0.

Change-Id: If390302fe702c533962d3e419c3bc40a3051a258
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus e9e4851259 gnu: r-omnipathr: Update to 3.14.0. 
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.14.0.
[propagated-inputs]: Add r-r-utils, r-rsqlite, r-vctrs, r-xml, and r-zip.

Change-Id: Id1b92ba954cce3dd58e6c69c6134a83661199113
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus 1526021427 gnu: r-omicade4: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.46.0.

Change-Id: Iaf158f19c145e2573ef064c7397b65a9e0432a27
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus 33e0b9b923 gnu: r-dmrseq: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.26.0.

Change-Id: I0f46bae1a57f40e18397706e7eefbf860f49ddb9
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus 95586e3eb6 gnu: r-dada2: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-dada2): Update to 1.34.0.

Change-Id: I5937d759336a1aff5a57dea6dfdafa14c74daec7
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus ae64cc4999 gnu: r-bsseq: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.42.0.

Change-Id: Ib5d5e0411fd1cf5b8e105abc0d6342fc3764913d
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus 2402d771a1 gnu: r-biotmle: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.30.0.

Change-Id: Ie6a51697dbc9c64a72b590aae6f0bd3f790b7fdd
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus b5862e7739 gnu: r-biotip: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.20.0.

Change-Id: I80e34c81bb4a2c230dc47a8d9e552d54ce32a0a8
 2024-12-03 16:58:01 +01:00
Ricardo Wurmus b79909b941 gnu: r-bioqc: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.34.0.

Change-Id: If886f3fa999527a3ea0acb85b9d37c97b44b3d0f
 2024-12-03 16:58:00 +01:00
Ricardo Wurmus 16dbc01c2a gnu: r-bionet: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.66.0.

Change-Id: Ibaf39875d77b72a5b0fa2fbb4c38bbcede1bede6
 2024-12-03 16:58:00 +01:00
Ricardo Wurmus fed505b4f8 gnu: r-bionero: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.14.0.

Change-Id: I2e34156fa78edd78cf92abc005e4344f588d046c
 2024-12-03 16:58:00 +01:00
Ricardo Wurmus acc4e04659 gnu: r-biomvrcns: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.46.0.

Change-Id: Ife2c6d063112425f3edba8a7014614890c0ab47c
 2024-12-03 16:58:00 +01:00
Ricardo Wurmus 6fdd84129f gnu: r-biomvcclass: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.74.0.

Change-Id: I6a4fc3f34df8ec1b22a288553d1514bee5119f23
 2024-12-03 16:58:00 +01:00
Ricardo Wurmus e3c2a316ed gnu: r-mvcclass: Update to 1.80.0. 
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.80.0.

Change-Id: Iaa52637e816f0f94f100601911c0c8ef00d40929
 2024-12-03 16:58:00 +01:00
Ricardo Wurmus 906bd4c4ca gnu: r-biomformat: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.34.0.

Change-Id: I9ddccaf993cf56b035f76790183ff3b3f0106e1f
 2024-12-03 16:58:00 +01:00
Ricardo Wurmus dd97a3b75f gnu: r-biodb: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.14.0.

Change-Id: I330b48c10408ff24bfc247bce30963fb74c4bb36
 2024-12-03 16:58:00 +01:00
Ricardo Wurmus 4ef8fd1956 gnu: r-biocthis: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.16.0.

Change-Id: Id640b2ba9003c9aa35b97502005a3161d3917a3c
 2024-12-03 16:58:00 +01:00
Ricardo Wurmus 0b59626104 gnu: r-bcrank: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-bcrank): Update to 1.68.0.

Change-Id: If355842dd91808ecf16012c51d26e8190e857a70
 2024-12-03 16:58:00 +01:00
Ricardo Wurmus fbf3a2ebcb gnu: r-bbcanalyzer: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-bbcanalyzer): Update to 1.36.0.

Change-Id: I549ff64e6fc31aadd651bf946b75614a706ba35e
 2024-12-03 16:58:00 +01:00
Ricardo Wurmus 7294a9a2cc gnu: r-baynorm: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-baynorm): Update to 1.24.0.

Change-Id: I308167a0a0603b584c5cac173b7585fb8860126b
 2024-12-03 16:58:00 +01:00
Ricardo Wurmus 933aad21f1 gnu: r-bayesspace: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-bayesspace): Update to 1.16.0.
[propagated-inputs]: Add r-arrow, r-biocparallel, r-dplyr, r-magrittr, r-microbenchmark,
r-rjson, r-rlang, r-tibble, and r-tidyr.

Change-Id: I0ff85fbb24c0c6fc71b6db6c4ab932878f2cec37
 2024-12-03 16:58:00 +01:00
Ricardo Wurmus b8b508e9db gnu: r-bayesknockdown: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-bayesknockdown): Update to 1.32.0.

Change-Id: I4ca08748a5fd02fe1846b70e0a2aefba892de659
 2024-12-03 16:58:00 +01:00
Ricardo Wurmus ad53920e15 gnu: r-basilisk: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.18.0.

Change-Id: I4f8ea0e5392d4409926b7e8aebbf0808fdb7eb19
 2024-12-03 16:58:00 +01:00
Ricardo Wurmus 90cf258231 gnu: r-basilisk-utils: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.18.0.

Change-Id: I48117be92e07cd0398e1a0b7a9f251480e605eb0
 2024-12-03 16:58:00 +01:00
Ricardo Wurmus 3544d6f997 gnu: r-basicstarrseq: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-basicstarrseq): Update to 1.34.0.

Change-Id: Id56b914b55a686b567d8cab8b3a43607b30dcbb1
 2024-12-03 16:58:00 +01:00
Ricardo Wurmus 4177337ffb gnu: r-basics: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-basics): Update to 2.18.0.

Change-Id: I12fde6edd3957e7d2a8574b99506b5c97ba0a7d1
 2024-12-03 16:57:59 +01:00
Ricardo Wurmus 8d543f88e6 gnu: r-basic4cseq: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-basic4cseq): Update to 1.42.0.

Change-Id: I6a14a3dc2a5b7c0671b790d922bfb3607521b7a6
 2024-12-03 16:57:59 +01:00
Ricardo Wurmus 175b67017f gnu: r-dir-expiry: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.14.0.

Change-Id: I335622480a24fa158d5a14b9b5079f13c462676c
 2024-12-03 16:57:59 +01:00
Ricardo Wurmus 7df9cad4a1 gnu: r-genetclassifier: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.46.0.

Change-Id: Ica8d3dd474b2264a33e018812139d3ead9cd9552
 2024-12-03 16:57:59 +01:00
Ricardo Wurmus 7413fbfe18 gnu: r-minet: Update to 3.64.0. 
* gnu/packages/bioconductor.scm (r-minet): Update to 3.64.0.

Change-Id: Ia64759baceacf0283dccb640fc890c8793c0670f
 2024-12-03 16:57:59 +01:00
Ricardo Wurmus d5f426b0bc gnu: r-biobtreer: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.18.0.

Change-Id: I9fcb882b50885435ba23f786395e4bd9bab64287
 2024-12-03 16:57:59 +01:00
Ricardo Wurmus 1dee0513d8 gnu: r-bgeedb: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.32.0.
[propagated-inputs]: Add r-anndata, r-bread, r-hdf5array, and r-zellkonverter.

Change-Id: I641fd978b6d35292c7618c3c4cafbee1b7db4f4a
 2024-12-03 16:57:59 +01:00
Ricardo Wurmus 33b808347f gnu: r-bgeecall: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.22.0.

Change-Id: I95e7ca93ad03d794411a6b0eddf3e37a751caa75
 2024-12-03 16:57:59 +01:00
Ricardo Wurmus 5d17a56a9d gnu: r-beclear: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.22.0.

Change-Id: Iefbaa848a926ed6f47bc554dbbcd37f4ef03d9ee
 2024-12-03 16:57:59 +01:00
Ricardo Wurmus 3adf3e66d6 gnu: r-megadepth: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.16.0.

Change-Id: Icca8cddd6a73e465bd6c63143b4891093825186a
 2024-12-03 16:57:59 +01:00
Ricardo Wurmus 95440b432b gnu: r-ballgown: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.38.0.

Change-Id: Ia1321828e5327b6d88e65803e2d1cb65d997896e
 2024-12-03 16:57:59 +01:00