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152,683 Commits 76 Branches 40 Tags
2839bb205d15f5970e7623f90fe1d65ffd7ddca3
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140806 Commits

Author SHA1 Message Date
Ricardo Wurmus
2839bb205d gnu: python-asgi-csrf: Update to 0.11. 
* gnu/packages/python-web.scm (python-asgi-csrf): Update to 0.11.
[arguments]: Remove.

Change-Id: I4814278b838f978d35a61fde8d3be9d6337d7eea
 2025-01-20 21:37:42 +01:00
Ricardo Wurmus
c6ead15d32 gnu: python-multipart: Update to 0.0.20. 
* gnu/packages/python-xyz.scm (python-multipart): Update to 0.0.20.
[native-inputs]: Remove python-mock, python-setuptools, and python-wheel; add
python-hatchling.
[build-system]: Use pyproject-build-system.
[arguments]: Remove.

Change-Id: If5400ee7e77ada5ad84fa06cf27f0190d55ad805
 2025-01-20 21:37:42 +01:00
Ricardo Wurmus
573ca3028d gnu: python-spectral-cube: Add missing input. 
* gnu/packages/astronomy.scm (python-spectral-cube)[native-inputs]: Add
python-wheel.

Change-Id: I7a5fa29cf8f72a4704fe4eed1f35494187d91c34
 2025-01-20 21:37:41 +01:00
Ricardo Wurmus
e233c5f455 gnu: python-reproject: Add missing input. 
* gnu/packages/astronomy.scm (python-reproject)[native-inputs]: Add
python-wheel.

Change-Id: I412c9ae9278a32b017e19aa3698d9ce01f430103
 2025-01-20 21:37:41 +01:00
Ricardo Wurmus
a8c6314174 gnu: python-gwcs: Add missing input. 
* gnu/packages/astronomy.scm (python-gwcs)[native-inputs]: Add python-wheel.

Change-Id: Ie7355a4df6c5daf2ac5be567185f99a40b88eef5
 2025-01-20 21:37:41 +01:00
Ricardo Wurmus
53756b005f gnu: python-asdf-astropy: Add missing input. 
* gnu/packages/astronomy.scm (python-asdf-astropy)[native-inputs]: Add
python-wheel.
[arguments]: Remove obsolete phase 'relax-requirements.

Change-Id: Ia5f475073cf372697b4f8c6661930a3893810b37
 2025-01-20 21:37:41 +01:00
Ricardo Wurmus
9310e926b8 gnu: python-astropy-minimal: Add missing input. 
* gnu/packages/astronomy.scm (python-astropy-minimal)[native-inputs]: Add
python-wheel.

Change-Id: Idf51791c864f90d5805d3c9afa633b34ff0f3ae3
 2025-01-20 21:37:41 +01:00
Ricardo Wurmus
8393789e0e gnu: python-regions: Add missing input. 
* gnu/packages/astronomy.scm (python-regions)[native-inputs]: Add
python-wheel.

Change-Id: I482877ec96fd96251ad633750572db721f0d7c37
 2025-01-20 21:37:41 +01:00
Ricardo Wurmus
3708af1b88 gnu: python-astropy-healpix: Add missing input. 
* gnu/packages/astronomy.scm (python-astropy-healpix)[native-inputs]: Add
python-wheel.

Change-Id: I16e53a22f402d853d1c1939db4b28a49af69e4c2
 2025-01-20 21:37:41 +01:00
Ricardo Wurmus
b886780eb9 gnu: python-asgi-csrf: Make compatibly with httpx 0.28.0+. 
* gnu/packages/python-web.scm (python-asgi-csrf)[arguments]: Add phase
'compatibility.

Change-Id: Ifa3604fd63e9045e3f060d6b57eeeab8afd182d3
 2025-01-20 21:37:41 +01:00
Ricardo Wurmus
f3969be43a gnu: python-mathics-pygments: Add missing inputs. 
* gnu/packages/maths.scm (python-mathics-pygments)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Iab1194635b8199cb681384d02f3a7dd25cbaac86
 2025-01-20 21:37:41 +01:00
Ricardo Wurmus
2d9691b744 gnu: python-mathicsscript: Add missing inputs. 
* gnu/packages/maths.scm (python-mathicsscript)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Icb6f613afefe2074bc6e84cab2573474e74643bd
 2025-01-20 21:37:41 +01:00
Ricardo Wurmus
27bdb2b9c7 gnu: python-metpy: Add missing inputs. 
* gnu/packages/geo.scm (python-metpy)[native-inputs]: Add python-setuptools
and python-wheel.

Change-Id: Iea093561b5ff4b9f7206de0ee82de36088c6d695
 2025-01-20 21:37:41 +01:00
Ricardo Wurmus
1f8e8e865d gnu: python-mathics-django: Add missing inputs. 
* gnu/packages/maths.scm (python-mathics-django)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I45522d75fed2492e5d2bb2d38cc430c84b2b2551
 2025-01-20 21:37:40 +01:00
Ricardo Wurmus
13b8bf923f gnu: python-columnize: Add missing inputs. 
* gnu/packages/python-xyz.scm (python-columnize)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I16e4c74ad5c158e9e45c2b1f930f5abb72f7f203
 2025-01-20 21:37:40 +01:00
Ricardo Wurmus
77ec444e54 gnu: python-term-background: Add missing input. 
* gnu/packages/python-xyz.scm (python-term-background)[native-inputs]: Remove
python-pkginfo; add python-wheel.

Change-Id: I9720aaad30294c532e9dcebd9247320e22e59866
 2025-01-20 21:37:40 +01:00
Ricardo Wurmus
5762420f9c gnu: scregseg: Patch for numpy compatibility. 
* gnu/packages/bioinformatics.scm (scregseg)[arguments]: Add phase
'compatibility.

Change-Id: I738d675c10acdbae7d40b3f806703ba8f7936a19
 2025-01-20 21:37:40 +01:00
Ricardo Wurmus
d4baa43992 gnu: python-voila: Update to 0.5.8. 
* gnu/packages/jupyter.scm (python-voila): Update to 0.5.8.
[build-system]: Use pyproject-build-system.
[arguments]: Disable one test; remove phase 'relax-requirements; remove custom
'check phase; add phases 'prepare-css and 'install-extensions.
[native-inputs]: Add python-hatchling, python-hatch-jupyter-builder, and a
number of additional origins.

Change-Id: Id09a8cec5fedc77596315ffc662f0789a84e179a
 2025-01-20 21:37:40 +01:00
Ricardo Wurmus
d944357afb gnu: python-episcanpy: Add missing input. 
* gnu/packages/bioinformatics.scm (python-episcanpy)[native-inputs]: Add
python-wheel.

Change-Id: Iba4ac520faf00e3db64df3532752b1de3eec1bc6
 2025-01-20 21:37:40 +01:00
Ricardo Wurmus
a7244d3b48 gnu: python-celltypist: Add missing input. 
* gnu/packages/bioinformatics.scm (python-celltypist)[native-inputs]: Add
python-wheel.

Change-Id: Ife136efe1d6f734951dde25e950148d3d7057d64
 2025-01-20 21:37:40 +01:00
Ricardo Wurmus
7e49f6718a gnu: python-metacells: Update to 0.9.5. 
* gnu/packages/bioinformatics.scm (python-metacells): Update to 0.9.5.
[native-inputs]: Add python-pandas-stubs and python-setuptools.

Change-Id: I25d28d0ebbb689c2561e25fec94cf4911c7f5158
 2025-01-20 21:37:40 +01:00
Ricardo Wurmus
7fb9188499 gnu: python-scanpy: Patch anndata version check. 
* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Add phase
'patch-version-check.

Change-Id: I0d2262197ae05c785fc65bd22e8052764434cab3
 2025-01-20 21:37:40 +01:00
Ricardo Wurmus
a21caddfcd gnu: python-metacells: Add missing input. 
* gnu/packages/bioinformatics.scm (python-metacells)[native-inputs]: Add
python-wheel.

Change-Id: I5ca117071b43bad1942f499795001fe8bc641546
 2025-01-20 21:37:40 +01:00
Ricardo Wurmus
b221e34953 gnu: python-fastcluster: Add missing inputs. 
* gnu/packages/python-science.scm (python-fastcluster)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I2fa034054f5183e04c2f1e673f841f07799a7b94
 2025-01-20 21:37:39 +01:00
Ricardo Wurmus
8aeaa211aa gnu: python-apscheduler: Add missing inputs. 
* gnu/packages/python-xyz.scm (python-apscheduler)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I777d0c0d2c758d7ec3385a11432c3e9cc16877f1
 2025-01-20 21:37:39 +01:00
Ricardo Wurmus
c43c0d06e3 gnu: python-cvxpy: Add missing input. 
* gnu/packages/python-science.scm (python-cvxpy)[native-inputs]: Add
python-wheel.

Change-Id: I66f4f504a0a4101abc845b7b7d0a0fccbd6b91b9
 2025-01-20 21:37:39 +01:00
Ricardo Wurmus
f874d80a36 gnu: python-scikit-survival: Add missing input. 
* gnu/packages/python-science.scm (python-scikit-survival)[native-inputs]: Add
python-setuptools.

Change-Id: I52e98c787cec226590f21c98e4287a41fb41f3d3
 2025-01-20 21:37:39 +01:00
Ricardo Wurmus
440cd7d571 gnu: python-qdldl: Add missing input. 
* gnu/packages/python-science.scm (python-qdldl)[native-inputs]: Add
python-wheel.

Change-Id: I6bca560b20a9c259eae95c09edcf10ead685ec21
 2025-01-20 21:37:39 +01:00
Ricardo Wurmus
322e03c807 gnu: python-osqp: Add missing inputs. 
* gnu/packages/python-science.scm (python-osqp)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Ief43d97442a98935dea1499c67e022e9beb5359e
 2025-01-20 21:37:39 +01:00
Ricardo Wurmus
f6e8d74eee gnu: python-scikit-learn-extra: Disable one test. 
* gnu/packages/machine-learning.scm (python-scikit-learn-extra)
[arguments]: Disable one test.

Change-Id: Idee17402250a55ca564724f00550ef36664982f6
 2025-01-20 21:37:39 +01:00
Ricardo Wurmus
7b70b21379 gnu: python-scikit-fuzzy: Add missing inputs. 
* gnu/packages/python-science.scm (python-scikit-fuzzy)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Idbaf5fa622b3584f8fd348ec0783605936d3bf41
 2025-01-20 21:37:39 +01:00
Ricardo Wurmus
b752a03e8b gnu: python-scikit-allel: Update to 1.3.13. 
* gnu/packages/python-science.scm (python-scikit-allel): Update to 1.3.13.
[propagated-inputs]: Remove python-click.
[native-inputs]: Remove python-scipy.

Change-Id: I3c29bd3d9f87d0866da747c344740bad71cae1c3
 2025-01-20 21:37:39 +01:00
Ricardo Wurmus
c33caf3bcd gnu: python-resolvelib: Update to 1.1.0b1. 
* gnu/packages/python-xyz.scm (python-resolvelib): Update to 1.1.0b1.
[build-system]: Use pyproject-build-system.
[arguments]: Remove.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: Ida8eb599bcfc02e84fc95ac276fba4ba217a6511
 2025-01-20 21:37:39 +01:00
Ricardo Wurmus
a947c4ea60 gnu: python-resampy: Update to 0.4.3. 
* gnu/packages/audio.scm (python-resampy): Update to 0.4.3.
[arguments]: Remove.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I79d0a460d4646c5fde3aec9314d9ccc6380002de
 2025-01-20 21:37:39 +01:00
Ricardo Wurmus
247ab0a786 gnu: python-pytest-tornado5: Add missing inputs. 
* gnu/packages/check.scm (python-pytest-tornado5)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I0b64ac5f3e50893cb3fab518c9779d2cd7b9c6a9
 2025-01-20 21:37:38 +01:00
Ricardo Wurmus
145b1c253e gnu: Remove python-pathlib. 
This package is obsolete, the module it provides is part of the standard
library, and the package has no users.

* gnu/packages/python-xyz.scm (python-pathlib): Remove variable.

Change-Id: I8c724ba7b62ad5602f6abdb4e5fdaf2806180ab5
 2025-01-20 21:37:38 +01:00
Ricardo Wurmus
5a4a529eeb gnu: rust-jiter-0.2: Add missing input. 
* gnu/packages/crates-io.scm (rust-jiter-0.2)[native-inputs]: Add
python-minimal-wrapper.

Change-Id: Ieab1e0a1e3329528fc21a160669e7ea8376c0e5f
 2025-01-20 21:37:38 +01:00
Ricardo Wurmus
b4ab10f91f gnu: python-cachecontrol-0.11: Add missing inputs. 
* gnu/packages/python-web.scm (python-cachecontrol-0.11)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I02091636a09a92093af109b044614fe617a5dd4c
 2025-01-20 21:37:38 +01:00
Ricardo Wurmus
8979655ddf gnu: python-liana-py: Update to 1.4.0. 
* gnu/packages/bioinformatics.scm (python-liana-py): Update to 1.4.0.
[arguments]: Adjust disabled tests.

Change-Id: I9245285e2d043b5e7cbce5fb95a30982cd981597
 2025-01-20 21:37:38 +01:00
Ricardo Wurmus
72e25861ed gnu: python-mizani: Add missing input. 
* gnu/packages/python-xyz.scm (python-mizani)[native-inputs]: Add
python-wheel.

Change-Id: I9a1a7a4ee38db7a48e14069efb2b7b97dad32a80
 2025-01-20 21:37:38 +01:00
Ricardo Wurmus
d3070a194d gnu: python-decoupler-py: Add missing input. 
* gnu/packages/bioinformatics.scm (python-decoupler-py)[native-inputs]: Add
python-wheel.

Change-Id: I37b8162e0dde4513b3a6f94455315489d7d08499
 2025-01-20 21:37:38 +01:00
Ricardo Wurmus
f1de8265f5 gnu: python-cell2cell: Add missing input. 
* gnu/packages/bioinformatics.scm (python-cell2cell)[native-inputs]: Add
python-wheel.

Change-Id: I79015fa48c976489d4c1182cb4506aae139325ad
 2025-01-20 21:37:38 +01:00
Ricardo Wurmus
309d4b218d gnu: python-gseapy: Add missing input. 
* gnu/packages/bioinformatics.scm (python-gseapy)[native-inputs]: Add
python-wheel.

Change-Id: I0ce3d3aeb5aa3fb1ab3f2aa524b066738cf9046a
 2025-01-20 21:37:38 +01:00
Ricardo Wurmus
56136c0740 gnu: python-cattrs: Disable failing test. 
* gnu/packages/python-xyz.scm (python-cattrs)[arguments]: Disable one more
test.

Change-Id: I8296abaa2faa745404354cb26f0d08024e7960c8
 2025-01-20 21:37:38 +01:00
Ricardo Wurmus
ec9173dbcb gnu: python-mudata: Update to 0.3.1. 
* gnu/packages/bioinformatics.scm (python-mudata): Update to 0.3.1.
[arguments]: Add phase 'pretend-version.
[native-inputs]: Remove python-flit-core; add python-hatch-vcs and
python-hatchling.

Change-Id: I87b8dc6ec557e0ca69930d82db7d6e64727228e9
 2025-01-20 21:37:37 +01:00
Ricardo Wurmus
d2ad0b98c5 gnu: python-locust: Disable some more tests. 
* gnu/packages/benchmark.scm (python-locust)[arguments]: Update list of
disabled tests.

Change-Id: I3d6d070a1cc771c006530454b0bb9506287bbe6b
 2025-01-20 21:37:37 +01:00
Ricardo Wurmus
c09fc8696d gnu: python-locust: Update to 2.32.5. 
* gnu/packages/benchmark.scm (python-locust): Update to 2.32.5.
[source]: Get from git repository.
[build-system]: Use pyproject-build-system.
[arguments]: Update list of disabled tests; remove custom 'check phase; add
phase 'fix-version.
[propagated-inputs]: Remove python-flask-basicauth and python-roundrobin; add
python-flask-login, python-setuptools, and python-tomli.
[native-inputs]: Add nss-certs-for-test, python-poetry-core,
and python-poetry-dynamic-versioning; remove python-mock and
python-setuptools-scm.

Change-Id: I5e7203d48eda9279531c9d3060d81d91974dee6e
 2025-01-20 21:37:37 +01:00
Ricardo Wurmus
b70ac4564c gnu: python-flask-assets: Update to 2.1.0-1.62efd23. 
* gnu/packages/python-web.scm (python-flask-assets): Update to
2.1.0-1.62efd23.
[source]: Fetch from git repository.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add nss-certs-for-test, python-pytest, python-setuptools, and
python-wheel.

Change-Id: I8c3dedb39d4cc1e51d9c3ef9fe9298586f871736
 2025-01-20 21:37:37 +01:00
Ricardo Wurmus
b3e8c9ce68 gnu: python-webassets: Fix build. 
* gnu/packages/python-web.scm (python-webassets)[arguments]: Delete broken
tests; run tests with nosetests.
[propagated-inputs]: Add python-pyyaml.
[native-inputs]: Remove python-pytest.

Change-Id: Iee1a38b02770259d11e4c7f6eff5d25c6be52ff9
 2025-01-20 21:37:37 +01:00
Ricardo Wurmus
b17052496f gnu: Remove python-flask-basicauth. 
This project is abandoned and has test failures that indicate that it doesn't
actually work properly anymore.

* gnu/packages/python-web.scm (python-flask-basicauth): Remove variable.

Change-Id: I828bd5409d71d45c5549e74deba3edecbfac4572
 2025-01-20 21:37:37 +01:00