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32be357706c0667af2003fa875f06ef18957669d
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45566 Commits

Author SHA1 Message Date
Mădălin Ionel Patrașcu
32be357706 gnu: python-dill: Update to 0.3.1.1. 
* gnu/packages/python-xyz.scm (python-dill): Update to 0.3.1.1.
[arguments]: Enable tests.
[native-inputs]: Add python-nose.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-12-19 00:01:49 +01:00
Marius Bakke
9077cf68ec gnu: libdbi-drivers: Adapt to multiple-output MariaDB. 
* gnu/packages/databases.scm (mariadb/fixed-install-db): New public variable.
(libdbi-drivers)[inputs]: Add MARIADB:DEV and MARIADB:LIB.  Remove MARIADB.
[native-inputs]: Add MARIADB/FIXED-INSTALL-DB.
[arguments]: Adjust accordingly.
 2019-12-18 22:36:37 +01:00
Marius Bakke
ab7010af1f gexp: Allow character literals in GEXP->SEXP. 
Fixes <https://bugs.gnu.org/38628>.

* tests/gexp.scm ("lower-gexp, character literal"): New test.
* guix/gexp.scm (gexp->sexp)[self-quoting?]: Add CHAR? to the tested types.
* guix/repl.scm (self-quoting?): Likewise.
* gnu/tests.scm (marionette-shepherd-service)[self-quoting?]: Likewise.
 2019-12-18 22:36:37 +01:00
Marius Bakke
fe3110ac58 gnu: darktable: Update to 2.6.3. 
* gnu/packages/photo.scm (darktable): Update to 2.6.3.
 2019-12-18 22:36:37 +01:00
Marius Bakke
6b1e6b5c42 gnu: darktable: Remove redundant inputs. 
* gnu/packages/photo.scm (darktable)[native-inputs]: Remove.
 2019-12-18 22:36:37 +01:00
Marius Bakke
17ac8bb670 gnu: darktable: Fix build failure. 
* gnu/packages/photo.scm (darktable)[arguments]: Move CPATH override from
 #:make-flags to a phase, so the GETENV call returns useful data.
 2019-12-18 22:36:37 +01:00
Marius Bakke
8e53fe2b91 gnu: Remove uses of deprecated Qemu network configuration. 
* gnu/build/vm.scm (load-in-linux-vm): Move Qemu network configuration from
ARCH-SPECIFIC-FLAGS to the Qemu command line.  Use the "-nic" option of Qemu
instead of "-device" and "-net".
* gnu/system/vm.scm (common-qemu-options): Do not add a '-net' command.
(virtual-machine-compiler): Use "-nic user,..." instead of "-net".
* doc/guix.texi (Installing Guix in a VM, Invoking guix system, Running Guix
in a VM): Do the same for examples.
 2019-12-18 22:36:37 +01:00
Mark H Weaver
7ebf4c40f1 gnu: linux-libre: Update to 5.3.18. 
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.18.
(linux-libre-5.3-pristine-source): Update hash.
 2019-12-18 15:13:41 -05:00
Mark H Weaver
96c158be1b gnu: linux-libre: Update deblob scripts. 
* gnu/packages/linux.scm (deblob-scripts-4.19): Update to 4.19.90.
(deblob-scripts-4.14): Update to 4.14.159.
(deblob-scripts-5.3, deblob-scripts-4.9, deblob-scripts-4.4): Update version
numbers to 5.3.17, 4.9.206, and 4.4.206, respectively, although the scripts
themselves have not changed.
 2019-12-18 15:13:39 -05:00
Ricardo Wurmus
77e2de3654 gnu: Add r-biodist. 
* gnu/packages/bioconductor.scm (r-biodist): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus
0156297f29 gnu: Add r-biocworkflowtools. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus
43b66e3f7c gnu: Add r-biocset. 
* gnu/packages/bioconductor.scm (r-biocset): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus
4a18112dfb gnu: Add r-biocpkgtools. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus
4d12c1e335 gnu: Add r-biocor. 
* gnu/packages/bioconductor.scm (r-biocor): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus
c2b36a0441 gnu: Add r-bioconcotk. 
* gnu/packages/bioconductor.scm (r-bioconcotk): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus
0678479391 gnu: Add r-multiassayexperiment. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): New variable.
 2019-12-18 15:29:08 +01:00
Ricardo Wurmus
244270e6ae gnu: Add r-experimenthub. 
* gnu/packages/bioconductor.scm (r-experimenthub): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus
49f0860be0 gnu: Add r-biocgraph. 
* gnu/packages/bioconductor.scm (r-biocgraph): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus
f180be2923 gnu: Add r-bioccasestudies. 
* gnu/packages/bioconductor.scm (r-bioccasestudies): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus
21afe920f1 gnu: Add r-ebarrays. 
* gnu/packages/bioconductor.scm (r-ebarrays): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus
f388834e11 gnu: Add r-reactomepa. 
* gnu/packages/bioconductor.scm (r-reactomepa): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus
c373223e63 gnu: Add r-graphite. 
* gnu/packages/bioconductor.scm (r-graphite): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus
3eacc8fa8f gnu: Add r-influencer. 
* gnu/packages/cran.scm (r-influencer): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus
ff1146b9b1 gnu: Add r-curatedtcgadata. 
* gnu/packages/bioconductor.scm (r-curatedtcgadata): New variable.
 2019-12-18 15:29:07 +01:00
Ricardo Wurmus
6f15ea2415 gnu: Add r-reactome-db. 
* gnu/packages/bioconductor.scm (r-reactome-db): New variable.
 2019-12-18 15:29:07 +01:00
Efraim Flashner
7e9d6f0f3f gnu: libmicrohttpd: Update to 0.9.69. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.69.
 2019-12-18 10:34:27 +02:00
Efraim Flashner
8fd6049403 gnu: cmst: Update to 2019.01.13. 
* gnu/packages/connman.scm (cmst): Update to 2019.01.13.
 2019-12-18 10:29:28 +02:00
Efraim Flashner
92fe25130c gnu: python-ecdsa: Actually run the test suite. 
* gnu/packages/python-crypto.scm (python-ecdsa)[arguments]: Replace
'check phase.
[native-inputs]: Add python-pytest.
 2019-12-18 09:54:47 +02:00
Efraim Flashner
c57b8419f4 gnu: python-ecdsa: Update to 0.14.1. 
* gnu/packages/python-crypto.scm (python-ecdsa): Update to 0.14.1.
[inputs]: Move openssl ...
[native-inputs]: ... to here.
[propagated-inputs]: Add python-six.
 2019-12-18 09:53:48 +02:00
Mark H Weaver
ef6856ea72 gnu: linux-libre: Update to 5.3.17. 
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.17.
(linux-libre-5.3-pristine-source): Update hash.
 2019-12-17 17:24:23 -05:00
Mark H Weaver
a15adacb52 gnu: linux-libre@4.19: Update to 4.19.90. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.90.
(linux-libre-4.19-pristine-source): Update hash.
 2019-12-17 17:23:42 -05:00
Mark H Weaver
0bb64e1796 gnu: linux-libre@4.14: Update to 4.14.159. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.159.
(linux-libre-4.14-pristine-source): Update hash.
 2019-12-17 17:22:36 -05:00
Ricardo Wurmus
29fd736a66 gnu: Add r-biobroom. 
* gnu/packages/bioconductor.scm (r-biobroom): New variable.
 2019-12-17 20:02:18 +01:00
Ricardo Wurmus
48bcbef07a gnu: Add r-bioassayr. 
* gnu/packages/bioconductor.scm (r-bioassayr): New variable.
 2019-12-17 20:02:18 +01:00
Ricardo Wurmus
991554fc92 gnu: Add r-chemminer. 
* gnu/packages/bioconductor.scm (r-chemminer): New variable.
 2019-12-17 20:02:18 +01:00
Ricardo Wurmus
d38775b13f gnu: Add r-bigpint. 
* gnu/packages/bioconductor.scm (r-bigpint): New variable.
 2019-12-17 20:02:18 +01:00
Ricardo Wurmus
820373dbc8 gnu: Add r-bigmemoryextras. 
* gnu/packages/bioconductor.scm (r-bigmemoryextras): New variable.
 2019-12-17 20:02:18 +01:00
Ricardo Wurmus
6ca6f8663b gnu: Add r-biggr. 
* gnu/packages/bioconductor.scm (r-biggr): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus
5aef09bd0e gnu: Add r-hyperdraw. 
* gnu/packages/bioconductor.scm (r-hyperdraw): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus
75a8bb3185 gnu: Add r-hypergraph. 
* gnu/packages/bioconductor.scm (r-hypergraph): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus
e823337c6e gnu: Add r-rsbml. 
* gnu/packages/bioconductor.scm (r-rsbml): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus
40fe63ad8a gnu: Add r-bifet. 
* gnu/packages/bioconductor.scm (r-bifet): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus
de9374b73c gnu: Add r-bicare. 
* gnu/packages/bioconductor.scm (r-bicare): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus
6bd50acf41 gnu: Add r-bhc. 
* gnu/packages/bioconductor.scm (r-bhc): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus
75eb1149f3 gnu: Add r-bgx. 
* gnu/packages/bioconductor.scm (r-bgx): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus
d11d6feafa gnu: Add r-bgmix. 
* gnu/packages/bioconductor.scm (r-bgmix): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus
1028bf0a05 gnu: Add r-rsvg. 
* gnu/packages/cran.scm (r-rsvg): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus
59d485e118 gnu: Add r-shinycssloaders. 
* gnu/packages/cran.scm (r-shinycssloaders): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus
96afb6c683 gnu: Add r-lim. 
* gnu/packages/cran.scm (r-lim): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus
c686e53afe gnu: Add r-diagram. 
* gnu/packages/cran.scm (r-diagram): New variable.
 2019-12-17 20:02:15 +01:00