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62232 Commits

Author SHA1 Message Date
Roel Janssen 3b399e514f gnu: Add r-apeglm. 
* gnu/packages/bioconductor.scm (r-apeglm): New variable.
 2020-12-09 12:12:21 +01:00
Roel Janssen a0df9b93ef gnu: Add r-rcppnumerical. 
* gnu/packages/bioconductor.scm (r-rcppnumerical): New variable.
 2020-12-09 12:12:21 +01:00
zimoun e9b60a2901 gnu: r-qvalue: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.22.0.
 2020-12-09 12:12:21 +01:00
zimoun 9af6fdf861 gnu: r-oligo: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.54.0.
 2020-12-09 12:12:21 +01:00
zimoun 464df5ccbb gnu: r-oligoclasses: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.52.0.
 2020-12-09 12:12:21 +01:00
zimoun d72c4c98c8 gnu: r-geneplotter: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.68.0.
 2020-12-09 12:12:20 +01:00
zimoun c03c76344e gnu: r-reportingtools: Update to 2.30.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.30.0.
 2020-12-09 12:12:20 +01:00
zimoun d1ff3604b7 gnu: r-regioner: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.22.0.
 2020-12-09 12:12:20 +01:00
zimoun fa7578b32f gnu: r-hpar: Update to 1.32.1. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.32.1.
 2020-12-09 12:12:20 +01:00
zimoun 7d56302332 gnu: r-annotate: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.68.0.
[propagated-inputs]: Remove 'r-rcurl', add 'r-httr'.
 2020-12-09 12:12:20 +01:00
zimoun 8e6a2c328f gnu: r-affxparser: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.62.0.
 2020-12-09 12:12:20 +01:00
zimoun a92219b45f gnu: r-affycoretools: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.62.0.
 2020-12-09 12:12:20 +01:00
zimoun 3e82f9ccaf gnu: r-affycontam: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.48.0.
 2020-12-09 12:12:20 +01:00
zimoun fa2d16cc27 gnu: r-affycompatible: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.50.0.
 2020-12-09 12:12:20 +01:00
zimoun c472549f67 gnu: r-affycomp: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.66.0.
 2020-12-09 12:12:20 +01:00
zimoun aa311eaa74 gnu: r-biocgenerics: Update to 0.36.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.36.0.
 2020-12-09 12:12:20 +01:00
zimoun 70ab99096d gnu: r-biocversion: Update to 3.12.0. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.12.0.
 2020-12-09 12:12:20 +01:00
zimoun a3e2e53837 gnu: r-cummerbund: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.32.0.
 2020-12-09 12:12:20 +01:00
zimoun 5ef637ddc7 gnu: r-coverageview: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.28.0.
 2020-12-09 12:12:20 +01:00
zimoun 25f4e6520e gnu: r-ideoviz: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.26.0.
 2020-12-09 12:12:20 +01:00
Efraim Flashner 533935ccf7 services: science.scm: Add missing copyright headers. 
This module was always supposed to have the GPL3 header in place.
Follow-up to 8f19e63f76.

* gnu/services/science.scm: Add Copyright headers.
 2020-12-09 12:55:02 +02:00
Guillaume Le Vaillant 53c480006b gnu: monero-gui: Update to 0.17.1.6. 
* gnu/packages/finance.scm (monero-gui): Update to 0.17.1.6.
 2020-12-09 11:34:25 +01:00
Guillaume Le Vaillant 5560bd7b6b gnu: monero: Update to 0.17.1.6. 
* gnu/packages/finance.scm (monero): Update to 0.17.1.6.
 2020-12-09 11:34:25 +01:00
elaexuotee@wilsonb.com 8e2aad26ae gnu: Add lemonbar-xft. 
* gnu/packages/wm.scm (lemonbar-xft): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2020-12-09 09:10:33 +00:00
Ryan Prior 9941036559 gnu: Add go-github-com-aws-sdk. 
* gnu/packages/golang.scm (go-github-com-aws-sdk): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-12-09 09:45:35 +02:00
Ryan Prior 016501aec6 gnu: Add go-github-com-jmespath-go-jmespath. 
* gnu/packages/golang.scm (go-github-com-jmespath-go-jmespath): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-12-09 09:45:35 +02:00
Ryan Prior f7c2896e52 gnu: Add go-github-com-go-sql-driver-mysql. 
* gnu/packages/golang.scm (go-github-com-go-sql-driver-mysql): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-12-09 09:45:31 +02:00
Leo Famulari 2b0185a74b gnu: linux-libre 4.14: Update to 4.14.211. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.211.
(linux-libre-4.14-pristine-source): Update hash.
 2020-12-09 01:08:15 -05:00
Leo Famulari a2eae5ec4a gnu: linux-libre 4.19: Update to 4.19.162. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.162.
(linux-libre-4.19-pristine-source): Update hash.
 2020-12-09 01:08:15 -05:00
Leo Famulari 66b1b55148 gnu: linux-libre 5.4: Update to 5.4.82. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.82.
(linux-libre-5.4-pristine-source): Update hash.
 2020-12-09 01:08:14 -05:00
Leo Famulari 54f777ca4e gnu: linux-libre: Update to 5.9.13. 
* gnu/packages/linux.scm (linux-libre-5.9-version): Update to 5.9.13.
(linux-libre-5.9-pristine-source): Update hash.
 2020-12-09 01:08:09 -05:00
Leo Famulari 02b21f35cc gnu: OpenSSL: Update to 1.1.1i [fixes CVE-2020-1971]. 
* gnu/packages/tls.scm (openssl)[replacement]: Update replacement to 1.1.1i
(openssl-1.1.1g): Replace with ...
(openssl-1.1.1i): ... new variable.
 2020-12-08 19:48:09 -05:00
Ludovic Courtès 456421fc0f gnu: guix: Update to 799f066. 
* gnu/packages/package-management.scm (guix): Update to 799f066.
 2020-12-08 23:38:04 +01:00
Ludovic Courtès 4a98735297 gnu: autotools: Add version 2.70. 
* gnu/packages/autotools.scm (autoconf): Rename to...
(autoconf-2.69): ... this.
(autoconf): Define as an alias for AUTOCONF-2.69.
(autoconf-2.70): New variable.
 2020-12-08 22:28:00 +01:00
Vincent Legoll 20e5658c04 gnu: ocaml-menhir: Update to 20200211. 
* gnu/packages/ocaml.scm (ocaml-menhir): Update to 20200211.
[build-system]: Switch from gnu to dune.
[arguments]: Remove phases and make-flags.
[native-inputs]: Remove field.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2020-12-08 20:18:11 +00:00
Efraim Flashner 2d1a621b8d gnu: mruby: Update to 2.1.2. 
* gnu/packages/ruby.scm (mruby): Update to 2.1.2.
 2020-12-08 22:09:30 +02:00
L p R n d n 8a55a3994c gnu: Add mypaint. 
* gnu/packages/image.scm (mypaint): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2020-12-08 20:06:38 +00:00
Christopher Baines c9c3569ad9 gnu: libmypaint: Update to 1.6.1. 
Needed by mypaint@2.0.1.

* gnu/packages/gimp.scm (libmypaint): Update to 1.6.1.
 2020-12-08 20:06:34 +00:00
Leo Famulari e1d3b07ffc gnu: isync: Use OpenSSL 1.1. 
* gnu/packages/mail.scm (isync)[inputs]: Replace openssl-1.0 with openssl.
 2020-12-08 13:25:27 -05:00
Efraim Flashner adbb62f16e gnu: fcitx5-material-color-theme: Add source file-name. 
* gnu/packages/fcitx5.scm (fcitx5-material-color-theme)[source]: Add
file-name field.
 2020-12-08 18:14:31 +02:00
Zhu Zihao af34f757ce gnu: Add fcitx5-material-color-theme. 
* gnu/packages/fcitx5.scm (fcitx5-material-color-theme): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2020-12-08 20:31:47 +08:00
Zhu Zihao ac1c7530d8 gnu: Add fcitx5-configtool. 
* gnu/packages/fcitx5.scm (fcitx5-configtool): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2020-12-08 20:31:47 +08:00
Zhu Zihao 9a23698ecd gnu: Add fcitx5-chinese-addons. 
* gnu/packages/fcitx5.scm (fcitx5-chinese-addons): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2020-12-08 20:31:47 +08:00
Zhu Zihao d4aca38b50 gnu: Add fcitx5-gtk. 
* gnu/packages/fcitx5.scm (fcitx5-gtk): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2020-12-08 20:31:47 +08:00
Zhu Zihao 4394d3721a gnu: Add fcitx5-qt. 
* gnu/packages/fcitx5.scm (fcitx5-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2020-12-08 20:31:47 +08:00
Zhu Zihao 69d3419ca3 gnu: Add libime. 
* gnu/packages/fcitx5.scm (libime): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2020-12-08 20:31:47 +08:00
Zhu Zihao 2d07803be8 gnu: Add fcitx5-lua. 
* gnu/packages/fcitx5.scm (fcitx5-lua): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2020-12-08 20:31:47 +08:00
Zhu Zihao aa5cfb39a5 gnu: Add fcitx5. 
* gnu/packages/fcitx5.scm (fcitx5): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2020-12-08 20:31:47 +08:00
Zhu Zihao ad6cf3d4ad gnu: Add xcb-imdkit. 
* gnu/packages/fcitx5.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2020-12-08 20:31:47 +08:00
Mathieu Othacehe 770fb659a6 services: cuirass: Add queue-size option. 
* gnu/services/cuirass.scm (<cuirass-configuration>): Add "queue-size" field.
(cuirass-shepherd-service): Honor it.
* doc/guix.texi (Continuous Integration): Document it.
 2020-12-08 11:56:26 +01:00