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1652 Commits

Author SHA1 Message Date
Julien Lepiller
80506bc6da gnu: python-pyyaml: Fix build. 
python-cython is required to generate the C source for the libyaml
extension, which is required for the `_yaml' module to work.  This in
turn lets the `sanity-check' phase succeed.

* gnu/packages/python-xyz.scm (python-pyyaml)[inputs]: Add
python-cython.
 2021-07-10 01:39:07 +02:00
Tobias Geerinckx-Rice
9dea3f101f Merge branch 'master' into core-updates 
Conflicts:
	gnu/packages/cups.scm
	gnu/packages/python-web.scm
	gnu/packages/web.scm
	guix/build/maven/pom.scm
 2021-06-23 18:45:21 +02:00
Vinicius Monego
4b39a6fa14 gnu: Add python-pykdtree. 
* gnu/packages/python-xyz.scm (python-pykdtree): New variable.
 2021-06-23 06:45:20 +02:00
Ludovic Courtès
6623d1cd7f gnu: python-numpy, python-scipy: Remove dependency on lapack. 
The dependency on lapack was unused; the LAPACK interface of OpenBLAS is
used instead.  The dependency on lapack was added in
cba256f8fa (numpy) and
719b01c157 (scipy).

* gnu/packages/python-science.scm (python-scipy)[inputs]: Remove
LAPACK.
* gnu/packages/python-xyz.scm (python-numpy)[inputs]: Likewise.
 2021-06-22 17:55:05 +02:00
Nicolas Goaziou
7c5d50f431 gnu: python-pikepdf: Update to 2.13.0. 
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.13.0.
 2021-06-22 17:42:15 +02:00
Marius Bakke
a5e6b705ac gnu: python-pika: Update to 1.2.0. 
* gnu/packages/python-xyz.scm (python-pika): Update to 1.2.0.
[source]: Change to GIT-FETCH.
[arguments]: New field.  Override and disable tests.
[native-inputs]:  Remove PYTHON-PYEV.  Add PYTHON-MOCK, PYTHON-NOSE, and
PYTHON-GEVENT.
(python2-pika): Remove variable.
 2021-06-22 17:21:34 +02:00
Ricardo Wurmus
14f72bd48d gnu: python-ddt: Update to 1.4.2. 
* gnu/packages/python-xyz.scm (python-ddt): Update to 1.4.2.
 2021-06-22 08:34:51 +02:00
Ricardo Wurmus
ac02d423d3 gnu: python-pyyaml: Update to 5.4.1. 
* gnu/packages/python-xyz.scm (python-pyyaml): Update to 5.4.1.
 2021-06-21 17:53:25 +02:00
Ricardo Wurmus
38d829cf24 gnu: python-argh: Remove python-tox. 
* gnu/packages/python-xyz.scm (python-argh)[propagated-inputs]: Remove python-tox.
 2021-06-21 12:25:21 +02:00
Marius Bakke
6f9a80b331 Merge branch 'master' into core-updates 
Note: this merge actually changes the 'curl' and 'python-attrs' derivations,
as part of solving caf4a7a277 and
12964df69a respectively.

4604d43c0e (gnu: gnutls@3.6.16: Fix cross-compilation.) was ignored because it
cannot currently be tested.

 Conflicts:
	gnu/local.mk
	gnu/packages/aidc.scm
	gnu/packages/boost.scm
	gnu/packages/curl.scm
	gnu/packages/nettle.scm
	gnu/packages/networking.scm
	gnu/packages/python-xyz.scm
	gnu/packages/tls.scm
 2021-06-19 17:38:47 +02:00
Arun Isaac
bccf2a9e25 gnu: python-miniboa: Update to 1.0.8. 
* gnu/packages/python-xyz.scm (python-miniboa): Update to 1.0.8.
 2021-06-18 17:09:52 +05:30
Xinglu Chen
8b07bbdcf7 gnu: python-pygit2: Update to 1.6.0. 
* gnu/packages/python-xyz.scm (python-pygit2): Update to 1.6.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-06-15 21:10:55 +03:00
Maxim Cournoyer
ea0a51071e gnu: Rename qtbase to qtbase-5. 
This change was automated via the following command:

$ git ls-files | xargs sed -i 's/,qtbase)/,qtbase-5)/g'
$ git ls-files | xargs sed -i 's/inherit qtbase)/inherit qtbase-5)/g'
$ git ls-files | xargs sed -i 's/package-version qtbase)/package-version qtbase-5)/g'
$ git checkout etc    # to clear some spurious changes

This is done so the qtbase package can be upgraded to version 6 in the
following commit.
 2021-06-14 00:24:42 -04:00
Marius Bakke
425df5b081 gnu: python-magic: Update to 0.4.22. 
* gnu/packages/python-xyz.scm (python-magic): Update to 0.4.22.
[source]: Switch to GIT-FETCH.
[arguments]: Remove #:tests?.  Adjust substitution and override check phase.
Remove obsolete phase.
[native-inputs]: Add WHICH.
 2021-06-13 01:00:47 +02:00
Marius Bakke
44775a7e8d gnu: python-attrs: Update to 21.2.0. 
* gnu/packages/python-xyz.scm (python-attrs): Update to 21.2.0.
[native-inputs]: Remove PYTHON-SPHINX and PYTHON-ZOPE-INTERFACE.
 2021-06-13 01:00:46 +02:00
Vinicius Monego
172a0794bb gnu: python-pyzmq: Update to 22.1.0. 
* gnu/packages/python-xyz.scm (python-pyzmq): Update to 22.1.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-06-08 13:20:43 -04:00
Vinicius Monego
65e4a610ae gnu: python-pyzmq: Enable tests. 
* gnu/packages/python-xyz.scm (python-pyzmq)[arguments]: Remove #:tests?. Add
new 'build-extensions' phase to build Cython extensions before tests.
[native-inputs]: Remove python-nose. Add python-cython and python-pytest.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-06-08 13:20:43 -04:00
Vinicius Monego
74c7055339 gnu: python-toolz: Update to 0.11.1. 
* gnu/packages/python-xyz.scm (python-toolz): Update to 0.11.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-06-08 13:17:52 -04:00
Vinicius Monego
63d2928a3b gnu: python-toolz: Enable tests. 
* gnu/packages/python-xyz.scm (python-toolz)[arguments]: Remove #:tests?.
Override check phase.
[native-inputs]: Add python-pytest.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-06-08 13:17:52 -04:00
Vinicius Monego
0654e43172 gnu: ptpython: Update to 3.0.17. 
* gnu/packages/python-xyz.scm (ptpython): Update to 3.0.17.
[propagated-inputs]: Add python-black.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-06-08 13:16:28 -04:00
Vinicius Monego
5502bf9a9b gnu: python-prompt-toolkit: Update to 3.0.18. 
* gnu/packages/python-xyz.scm (python-prompt-toolkit): Update to 3.0.18.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-06-08 13:16:28 -04:00
zimoun
79925c2271 gnu: python2-partd: Remove package. 
* gnu/packages/python-xyz.scm (python2-partd): Remove variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-06-08 13:10:28 -04:00
zimoun
515360fdc7 gnu: python2-numpy-documentation: Remove package. 
* gnu/packages/python-xyz.scm (python2-numpy-documentation): Remove variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-06-08 13:10:27 -04:00
zimoun
16a23337be gnu: python2-hdf4: Remove package. 
* gnu/packages/python-xyz.scm (python2-hdf4): Remove variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-06-08 13:10:26 -04:00
zimoun
1e582a0856 gnu: python2-gridmap: Remove package. 
* gnu/packages/python-xyz.scm (python2-gridmap): Remove variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-06-08 13:10:26 -04:00
zimoun
8871b69840 gnu: python2-fastimport: Remove package. 
* gnu/packages/python-xyz.scm (python2-fastimport): Remove variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-06-08 13:10:25 -04:00
zimoun
e13ab46c20 gnu: python2-bigfloat: Remove package. 
* gnu/packages/python-xyz.scm (python2-bigfloat): Remove variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-06-08 13:10:22 -04:00
Efraim Flashner
61bce4d143 gnu: python-mappy: Move to (gnu packages bioinformatics). 
* gnu/packages/python-xyz.scm (python-mappy): Move to ...
* gnu/packages/bioinformatics.scm: ... here.
 2021-06-08 09:50:55 +03:00
Nicolas Goaziou
69f56c2767 gnu: python-pikepdf: Update to 2.12.2. 
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.12.2.
 2021-06-07 23:29:52 +02:00
Ricardo Wurmus
856de4f61c gnu: Add python-rich. 
* gnu/packages/python-xyz.scm (python-rich): New variable.
 2021-06-07 10:53:16 +02:00
Ricardo Wurmus
17f3194150 gnu: python-dataclasses: Update to 0.8. 
* gnu/packages/python-xyz.scm (python-dataclasses): Update to 0.8.
 2021-06-07 10:53:16 +02:00
Ricardo Wurmus
f41e56dcf1 gnu: python-attrs: Update to 21.2.0. 
* gnu/packages/python-xyz.scm (python-attrs): Update to 21.2.0.
(python-attrs-bootstrap): Keep this at 19.3.0 to avoid mass rebuilds.
 2021-06-07 10:53:16 +02:00
Ricardo Wurmus
12964df69a gnu: python-attrs: Conditionally execute tests. 
* gnu/packages/python-xyz.scm (python-attrs)[arguments]: Wrap "check" phase in
conditional expression.
 2021-06-07 10:53:16 +02:00
Marius Bakke
8d59c262ad Merge branch 'master' into core-updates 
Conflicts:
	gnu/local.mk
	gnu/packages/algebra.scm
	gnu/packages/bioinformatics.scm
	gnu/packages/curl.scm
	gnu/packages/docbook.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/maths.scm
	gnu/packages/plotutils.scm
	gnu/packages/python-web.scm
	gnu/packages/python-xyz.scm
	gnu/packages/radio.scm
	gnu/packages/readline.scm
	gnu/packages/tls.scm
	gnu/packages/xml.scm
	gnu/packages/xorg.scm
 2021-06-06 21:16:32 +02:00
Hartmut Goebel
d8fed768a8 gnu: Add python-asn1tools. 
* gnu/packages/python-xyz.scm (python-asn1tools): New variable.
 2021-06-06 17:50:33 +02:00
Mădălin Ionel Patrașcu
78469645fd gnu: Add python-sparse. 
* gnu/packages/python-xyz.scm(python-sparse): New variable.
 2021-06-06 08:33:21 +02:00
Ricardo Wurmus
f9ef881e4d gnu: python-pypandoc: Use patched texlive-amsfonts. 
* gnu/packages/python-xyz.scm (python-pypandoc)[native-inputs]: Use
texlive-amsfonts/patched.
 2021-06-05 09:26:14 +02:00
Ricardo Wurmus
45aae518e7 gnu: python-ipython-documentation: Use patched texlive-amsfonts. 
* gnu/packages/python-xyz.scm (python-ipython-documentation)[native-inputs]:
Use texlive-amsfonts/patched.
 2021-06-05 09:26:14 +02:00
Ricardo Wurmus
ace97406f2 gnu: python-matplotlib-documentation: Use patched texlive-amsfonts. 
* gnu/packages/python-xyz.scm (python-matplotlib-documentation)[native-inputs]:
Use texlive-amsfonts/patched.
 2021-06-05 09:26:14 +02:00
Ricardo Wurmus
d71751526f gnu: python-numpy-documentation: Use patched texlive-amsfonts. 
* gnu/packages/python-xyz.scm (python-numpy-documentation)[native-inputs]: Use
texlive-amsfonts/patched.
 2021-06-05 09:26:14 +02:00
Roel Janssen
e639da604f gnu: python-anndata: Update to 0.7.6. 
* gnu/packages/python-xyz.scm (python-anndata): Update to 0.7.6.
 2021-06-04 23:51:24 +02:00
Marius Bakke
bb934ab79d gnu: python-pydantic: Update to 1.8.2. 
* gnu/packages/python-xyz.scm (python-pydantic): Update to 1.8.2.
[arguments]: Disable some new tests.
[native-inputs]: Add PYTHON-PYTEST-MOCK.
[propagated-inputs]: Add PYTHON-TYPING-EXTENSIONS.
 2021-06-04 14:57:39 +02:00
Roel Janssen
50dfbbf8ef gnu: Add python-sinfo. 
* gnu/packages/python-xyz.scm (python-sinfo): New variable.
 2021-06-01 10:18:00 +02:00
Roel Janssen
b346a7c7db gnu: Add python-stdlib-list. 
* gnu/packages/python-xyz.scm (python-stdlib-list): New variable.
 2021-06-01 10:13:38 +02:00
Stefan Reichör
71854b7dfe gnu: Add python-easy-ansi. 
* gnu/packages/python-xyz.scm (python-easy-ansi): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-05-31 21:05:03 +02:00
Tobias Geerinckx-Rice
2a600ae5ff gnu: python-fastjsonschema: Update to 2.15.1. 
* gnu/packages/python-xyz.scm (python-fastjsonschema): Update to 2.15.1.
 2021-05-30 11:52:59 +02:00
Tobias Geerinckx-Rice
fc71a45afd gnu: python-cookiecutter: Update to 1.7.3. 
* gnu/packages/python-xyz.scm (python-cookiecutter): Update to 1.7.3.
 2021-05-30 11:52:59 +02:00
Roel Janssen
4ad3f818c9 gnu: Add python-cachetools. 
* gnu/packages/python-xyz.scm (python-cachetools): New variable.
 2021-05-28 10:47:16 +02:00
Roel Janssen
bb5a3e91e9 gnu: Add python-argopt. 
* gnu/packages/python-xyz.scm (python-argopt): New variable.
 2021-05-28 10:09:10 +02:00
Roel Janssen
167fc141d4 gnu: Add python-helper. 
* gnu/packages/python-xyz.scm (python-helper): New variable.
 2021-05-27 20:59:16 +02:00