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Commit Graph

140985 Commits

Author SHA1 Message Date
Ricardo Wurmus
4e98ed826a gnu: wllvm: Add missing inputs.
* gnu/packages/llvm.scm (wllvm)[native-inputs]: Add python-setuptools and
python-wheel.

Change-Id: I080f132763607f7bc5f4609c993bd2a067cd9be4
2025-01-20 21:37:59 +01:00
Ricardo Wurmus
31fe58bb38 gnu: python-more-itertools: Update to 10.6.0.
* gnu/packages/python-xyz.scm (python-more-itertools-next): Rename this
variable...
(python-more-itertools): ...to this; update to 10.6.0.
[propagated-inputs]: Remove python-six.
* gnu/packages/astronomy.scm (python-yt)[propagated-inputs]: Replace
python-more-itertools-next with python-more-itertools.

Change-Id: I2fef91f87afde2b2659dd25b831fb13b4c118454
2025-01-20 21:37:59 +01:00
Ricardo Wurmus
314ef4ccd8 gnu: python-incremental: Update to 24.7.2.
* gnu/packages/python-xyz.scm (python-incremental): Update to 24.7.2.
[build-system]: Use pyproject-build-system.
[arguments]: Add phase 'patch-build-system; disable tests.
[native-inputs]: Add python-pytest, python-setuptools, and python-wheel.
[propagated-inputs]: Add python-tomli.

Change-Id: I6c49f2da746398d469f6fdc611fc08cfbe72a0e1
2025-01-20 21:37:59 +01:00
Ricardo Wurmus
a2a628de68 gnu: python-gymnasium: Add missing input.
* gnu/packages/machine-learning.scm (python-gymnasium)[native-inputs]: Add
python-wheel.

Change-Id: I118aa4283767906c59a6daa93d0ba01bfbfb6029
2025-01-20 21:37:59 +01:00
Sharlatan Hellseher
b81d96ac95 gnu: Remove python-pytest-lazy-fixture.
Failed to build, have no users in Guix, not maintained for 3 years.
See <https://github.com/TvoroG/pytest-lazy-fixture/issues/63>.

* gnu/packages/check.scm (python-pytest-lazy-fixture): Delete variable.

Change-Id: Icce5010704f20a5530ff9fd702e5c0cc694cc0ec
2025-01-20 21:37:59 +01:00
Sharlatan Hellseher
574baf7cb5 gnu: python-cleanlab: Update to 2.7.0.
* gnu/packages/machine-learning.scm (python-cleanlab): Update to 2.7.0.
[arguments] <test-flags>: Ignore tests requiring Hugging Face datasets.
[native-inputs]: Remove python-pytest-lazy-fixture; add
python-typing-extensions.

Change-Id: I7988b4c0b6dff10a44d4a1fbffa48b950158302c
2025-01-20 21:37:59 +01:00
Ricardo Wurmus
5223530ab2 gnu: python-scrapy: Update to 2.12.0.
* gnu/packages/python-web.scm (python-scrapy): Update to 2.12.0.
[arguments]: Update list of disabled tests.
[propagated-inputs]: Remove python-botocore and python-setuptools; add
python-packaging and python-typing-extensions.
[native-inputs]: Add python-mypy and python-setuptools; remove
python-pyftpdlib and python-uvloop.

Change-Id: If747801ccbb6047b8d1a98714dafae8ab3743b07
2025-01-20 21:37:59 +01:00
Ricardo Wurmus
7c1f1d9f4b gnu: python-pplpy: Add missing inputs.
* gnu/packages/sagemath.scm (python-pplpy)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I1da4130ddedeefbe71ae07c3885ae0e5fa1f8204
2025-01-20 21:37:59 +01:00
Ricardo Wurmus
d42e59c575 gnu: python-internetarchive: Update to 5.1.0.
* gnu/packages/web.scm (python-internetarchive): Update to 5.1.0.
[source]: Remove snippet.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase; use test-flags.
[propagated-inputs]: Add python-importlib-metadata and python-tqdm; update
python-jsonpatch and python-schema.
[native-inputs]: Add nss-certs-for-test, python-setuptools, and python-wheel.

Change-Id: I8b5ea44e118ccb30b4e470957823a3f4dde89f43
2025-01-20 21:37:59 +01:00
Ricardo Wurmus
4de70c1a77 gnu: python-hdf4: Update to 0.9.2.
* gnu/packages/python-xyz.scm (python-hdf4): Update to 0.9.2.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase; add phase 'build-extensions.
[native-inputs]: Remove python-nose; add python-pytest, python-setuptools, and
python-wheel.
[inputs]: Drop labels.

Change-Id: I96312f9509fae89a4c21a58b593ccb87952e0332
2025-01-20 21:37:59 +01:00
Sharlatan Hellseher
235ce649a9 gnu: python-maxminddb: Update to 2.6.3.
* gnu/packages/geo.scm (python-maxminddb): Update to 2.6.3.
[arguments] <tests?>: Enable them as no maxmind database is required.
[native-inputs]: Add python-pytest, python-setuptools, and python-wheel.

Change-Id: Ie4aaa559384c75942da83afdcca0a22a7c5ced1c
2025-01-20 21:37:58 +01:00
Ricardo Wurmus
64acec341b gnu: python-fanc: Update to 0.9.28.
* gnu/packages/bioinformatics.scm (python-fanc): Update to 0.9.28.
[arguments]: Remove custom 'check phase; disable tests that seemingly freeze.
[propagated-inputs]: Add python-imageio, python-pywavelets, and
python-tifffile; remove python-pytest.
[native-inputs]: Add python-pytest, python-setuptools, and python-wheel.

Change-Id: Ia83f5fe1d0cbbf56840061feb9561e439380e965
2025-01-20 21:37:58 +01:00
Ricardo Wurmus
fadbc2d660 gnu: Deprecate fanc.
fanc is a duplicate of python-fanc.

* gnu/packages/bioinformatics.scm (fanc): Define as deprecated name for
python-fanc.

Change-Id: I28e330d9bfe64fd59b49001ecc56e2c6fd191b55
2025-01-20 21:37:58 +01:00
Ricardo Wurmus
01dc3284af gnu: python-nbstripout: Update to 0.8.1.
* gnu/packages/jupyter.scm (python-nbstripout): Update to 0.8.1.
[arguments]: Update test flags.
[native-inputs]: Remove python-pytest-cram, python-pytest-flake8, and
python-pytest-runner.

Change-Id: I308ae787f7777ef11661ce8ef8802e13fa743509
2025-01-20 21:37:58 +01:00
宋文武
ba2e538ce3 gnu: python-flask-misaka: Update to 1.0.1.
* gnu/packages/python-web.scm (python-flask-misaka): Update to 1.0.1.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-flask, python-pytest, python-setuptools and
python-wheel.  Remove python-coverage and python-mock.
[propagated-inputs]: Add python-markupsafe.  Remove python-flask.

Change-Id: Ib737e6268f98227909606753ffe8d9f72c539f73
2025-01-20 21:37:58 +01:00
宋文武
2260a70870 gnu: python-flask-migrate: Update to 4.1.0.
* gnu/packages/python-web.scm (python-flask-migrate): Update to 4.1.0.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-pytest, python-setuptools and python-wheel.

Change-Id: I39742c22619c6c3fca51f954c0930c2ccf0d4577
2025-01-20 21:37:58 +01:00
宋文武
5e1e8bc10d gnu: python-alembic: Use python-sqlalchemy-2.
* gnu/packages/databases.scm (python-alembic)[propagated-inputs]:
Replace python-sqlalchemy with python-sqlalchemy-2.

Change-Id: I49ad961eac3bcba5eaee05083e5299f17a8fae33
2025-01-20 21:37:58 +01:00
宋文武
f0c5c4ee9b gnu: python-hsluv: Fix build.
* gnu/packages/python-xyz.scm (python-hsluv)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I4dbed681c4f1a83b0300dc9611cdf89072591389
2025-01-20 21:37:58 +01:00
宋文武
298d371de8 gnu: python-gpxpy: Fix build.
* gnu/packages/python-xyz.scm (python-gpxpy)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I89d4360ed6502c84580bface08dba850c5d9efe1
2025-01-20 21:37:58 +01:00
宋文武
1ffb84c5a3 gnu: python-glom: Update to 24.11.0.
* gnu/packages/python-xyz.scm (python-glom): Update to 24.11.0.

Change-Id: I37c849475cedd1ecd812f896553a9deeabb00c3d
2025-01-20 21:37:58 +01:00
宋文武
5fa1ed817a gnu: python-daemux: Fix build.
* gnu/packages/tmux.scm (python-daemux)[native-inputs]: Add python-flake8.

Change-Id: I0e3ec537c6722643ebb9ebc243230101bb2547ca
2025-01-20 21:37:57 +01:00
宋文武
0872bbcedb gnu: python-ebooklib: Fix build.
* gnu/packages/ebook.scm (python-ebooklib)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Iba564c2b091b4a268d7727c5ad03dcef1b59ed62
2025-01-20 21:37:57 +01:00
宋文武
4533972587 gnu: python-eliot: Update to 1.16.0.
* gnu/packages/python-xyz.scm (python-eliot): Update to 1.16.0.
[propagated-inputs]: Add python-orjson.  Remove python-six.
[native-inputs]: Add python-pytest-xdist and python-wheel.  Remove python-dask.

Change-Id: Ibc6eeb5fe4475bf2145a8ab72aa82f17a14bf9f0
2025-01-20 21:37:57 +01:00
宋文武
2ffc1eb135 gnu: Remove python-lirc.
Archived in 2020.11, the new way to configure keymaps is using ir-keytable
which comes with v4l-utils.

* gnu/packages/lirc.scm (python-lirc): Remove variable.

Change-Id: I7f28e6f818705f6a616904951e07a33bbfb081d9
2025-01-20 21:37:57 +01:00
宋文武
ecf839fc0a gnu: python-imap-tools: Update to 1.9.0.
* gnu/packages/python-web.scm (python-imap-tools): Update to 1.9.0.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I1daf6ab61335002c4d66c7272c6a81773e40e56b
2025-01-20 21:37:57 +01:00
宋文武
7d4c92e1ea gnu: python-cssutils: Update to 2.11.1.
* gnu/packages/python-web.scm (python-cssutils): Update to 2.11.1.
[propagated-inputs]: Add python-more-itertools.
[inputs]: Add python-cssselect and python-lxml.

Change-Id: I4832cd718fade9986df6bd7e82fe3e886e452a19
2025-01-20 21:37:57 +01:00
Ricardo Wurmus
595c139ef4 gnu: Add python-s3fs.
* gnu/packages/python-web.scm (python-s3fs): New variable.

Change-Id: I5f9f02cc91f3037d382af68c785d215550a0efe6
2025-01-20 21:37:57 +01:00
Ricardo Wurmus
4fc70b6ca0 gnu: Add python-aiobotocore.
* gnu/packages/python-web.scm (python-aiobotocore): New variable.

Change-Id: I47b3374e06f82b2ec842b7b11acce8ce6df3c363
2025-01-20 21:37:57 +01:00
Ricardo Wurmus
9a299d931e gnu: Add python-aioitertools.
* gnu/packages/python-web.scm (python-aioitertools): New variable.

Change-Id: I1ef29297b9e3d526234270dc2701ab55704e3fe4
2025-01-20 21:37:57 +01:00
Ricardo Wurmus
ccd83fd84e gnu: python-fsspec: Update to 2024.12.0.
* gnu/packages/python-xyz.scm (python-fsspec): Update to 2024.12.0.

Change-Id: I47a782911a0139a24fc5edcf16abcf648e621d24
2025-01-20 21:37:57 +01:00
Ricardo Wurmus
4f5d5cfb12 gnu: python-multidict: Update to 6.1.0.
* gnu/packages/python-xyz.scm (python-multidict): Update to 6.1.0.
[propagated-inputs]: Add python-typing-extensions.

Change-Id: I1bc3e818a5c009ed360cd2ad2c00a395c5ea8966
2025-01-20 21:37:56 +01:00
Ricardo Wurmus
2a24283269 gnu: python-twisted: Add comment.
* gnu/packages/python-xyz.scm (python-twisted)[native-inputs]: Add comment on
why glibc-utf8-locales is needed.

Change-Id: I0effed9600b2b2238a33b70bd38f4bb565b6df9f
2025-01-20 21:37:56 +01:00
Sharlatan Hellseher
db293bb6af gnu: nikola: Update to 8.3.1, fix build.
* gnu/packages/python-xyz.scm (nikola): Update to 8.3.1. Fix build.
[arguments] <test-flags>: Ignore dev_test_sever tests which are all
failing.
<phases>: Add 'fix-pytest-config.
[native-inputs]: Remove python-pytest-cov; add python-feedparser.

Change-Id: I4394a4bf19a64f1bdda578352f0d3bdfa036c752
2025-01-20 21:37:56 +01:00
Ricardo Wurmus
f59129c09b gnu: python-hacking: Update to 7.0.0.
* gnu/packages/openstack.scm (python-hacking): Update to 7.0.0.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: Ie82d0a89699fa4ae32f008f089de402181f89bc3
2025-01-20 21:37:56 +01:00
Ricardo Wurmus
522225af77 gnu: python-twisted: Update to 24.11.0.
* gnu/packages/python-xyz.scm (python-twisted): Update to 24.11.0.
[build-system]: Use pyproject-build-system.
[arguments]: Enable tests; add phases 'patch-build-system and
'disable-broken-tests; add custom 'check phase.
[propagated-inputs]: Delete python-pyhamcrest; add python-attrs,
python-bcrypt, and python-typing-extensions.
[native-inputs]: Add python-coverage, python-hatch-fancy-pypi-readme,
python-hatchling, python-httpx, python-hypothesis, python-pyflakes,
python-pyhamcrest, python-pytest, python-sphinx, and python-sphinx-rtd-theme.

Change-Id: Ib55c2363f4cdb06e70f84545142d225271c0fa0a
2025-01-20 21:37:56 +01:00
Ricardo Wurmus
0a8f423124 gnu: python-automat: Update to 24.8.1.
* gnu/packages/python-xyz.scm (python-automat): Update to 24.8.1.
[arguments]: Enable tests; adjust 'remove-entrypoint.
[native-inputs]: Add python-pytest; remove python-graphviz.
[propagated-inputs]: Add python-graphviz and python-typing-extensions; remove
python-six and python-attrs.

Change-Id: Ic77e57da21590435ecfde8d9921ce6ec36576d67
2025-01-20 21:37:56 +01:00
Ricardo Wurmus
56eab10bc0 gnu: python-screed: Update to 1.1.3.
* gnu/packages/bioinformatics.scm (python-screed): Update to 1.1.3.
[native-inputs]: Add python-importlib-resources, python-pycodestyle,
python-pytest, python-setuptools-scm, and python-setuptools-scm-git-archive;
removve python-pytest-runner.

Change-Id: I3ce12acedbbc97d58f2266e042872494556afd3b
2025-01-20 21:37:56 +01:00
Ricardo Wurmus
4fde638b3b gnu: python-toolrack: Update to 4.0.1.
* gnu/packages/python-xyz.scm (python-toolrack): Update to 4.0.1.
[build-system]: Use pyproject-build-system.
[arguments]: Adjust phase 'patch-/bin/sh; remove custom 'check phase.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I3de26b028d5eeb23a534ae2dc17e8084249d19e1
2025-01-20 21:37:56 +01:00
Sharlatan Hellseher
f60567886a gnu: python-sunkit-image: Disable tests.
* gnu/packages/astronomy.scm (python-sunkit-image): Disable tests.

Change-Id: I66dacde6d33c54a2dd39ac411bd1e13868800d8a
2025-01-20 21:37:56 +01:00
Sharlatan Hellseher
8712167d4e gnu: python-acstools: Add missing inputs.
* gnu/packages/astronomy.scm (python-acstools) [native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Ia0bcc0ada21e79b4460f24d9308035f0dc2dc127
2025-01-20 21:37:55 +01:00
Sharlatan Hellseher
332481ce58 gnu: python-astroplan: Adjust inputs.
* gnu/packages/astronomy.scm (python-astroplan) [propagated-inputs]:
Remove python-six.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I6a126ccb800e6bd82ecb1144367bed73d3548caa
2025-01-20 21:37:55 +01:00
Sharlatan Hellseher
530fdf80bc gnu: python-stpipe: Add missing inputs.
* gnu/packages/astronomy.scm (python-stpipe): [native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I62cc2f5f6a14b15caa7c0cc6c48a644bfaf53674
2025-01-20 21:37:55 +01:00
Sharlatan Hellseher
5aa467301a gnu: python-astroquery: Add missing inputs.
* gnu/packages/astronomy.scm (python-astroquery) [native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Icd3e55d29ff8e735188abdce933c336088115db7
2025-01-20 21:37:55 +01:00
Ricardo Wurmus
7343ab138c gnu: python-monthdelta: Add missing inputs.
* gnu/packages/python-xyz.scm (python-monthdelta)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I273ed753c5808098434efa20c70a7c7f0a7d109d
2025-01-20 21:37:55 +01:00
Ricardo Wurmus
4ad6679e79 gnu: python-mofax: Update to 0.3.7-1.e4821fe.
This looks like a downgrade, but it is in fact a more recent commit.

* gnu/packages/bioinformatics.scm (python-mofax): Update to 0.3.7-1.e4821fe.
[source]: Remove obsolete snippet.
[arguments]: Remove test flags.
[propagated-inputs]: Move python-poetry-core from here...
[native-inputs]: ...to here.

Change-Id: I6093d282887135f6b99d34a853cd9371cffe98f1
2025-01-20 21:37:55 +01:00
Ricardo Wurmus
822f23c0e5 gnu: python-mord: Add missing inputs.
* gnu/packages/machine-learning.scm (python-mord)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I597517f73fca8e3fe15b81bb6b8929572841de95
2025-01-20 21:37:55 +01:00
Ricardo Wurmus
f457f79d09 gnu: python-hyperkitty: Update to 1.3.12.
* gnu/packages/mail.scm (python-hyperkitty): Update to 1.3.12.
[build-system]: Use pyproject-build-system.
[arguments]: Run tests conditionally.
[propagated-inputs]: Add python-django-debug-toolbar, python-django-q2,
python-elasticsearch, python-isort, python-lxml, python-tzdata, and
python-whoosh; remove python-django-q and python-pytz.
[native-inputs]: Remove python-mock, python-elasticsearch, python-isort, and
python-lxml; add tzdata-for-tests and python-pdm-backend.

Change-Id: I38a38fe75bc43071443f9ea49eeb8ccc9bf3fa3d
2025-01-20 21:37:55 +01:00
Ricardo Wurmus
e5a67a42a8 gnu: python-django-q2: Add missing inputs.
* gnu/packages/django.scm (python-django-q2)[propagated-inputs]: Add
python-blessed, python-boto3, python-croniter, python-django-q-rollbar,
python-django-q-sentry, python-django-redis, python-hiredis,
python-importlib-metadata, python-iron-mq, python-psutil, python-pymongo,
python-redis, and python-setproctitle.
[native-inputs]: Add python-pytest.

Change-Id: If0bfa8d218a5230c739d535feed107e716e88983
2025-01-20 21:37:55 +01:00
Ricardo Wurmus
7bcc581fda gnu: Add python-django-q-rollbar.
* gnu/packages/django.scm (python-django-q-rollbar): New variable.

Change-Id: I6a47fa6a65abfe6fec63f7c860ce0841cccaa462
2025-01-20 21:37:55 +01:00
Ricardo Wurmus
5af69ae4a4 gnu: Add python-django-q-sentry.
* gnu/packages/django.scm (python-django-q-sentry): New variable.

Change-Id: Iaa23ed584b6528aee52d842e0b4b88ff2ffff09f
2025-01-20 21:37:55 +01:00