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525e83ec83eca8d555913e59235902fa635b052d
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753 Commits

Author SHA1 Message Date
Vincent Legoll
525e83ec83 gnu: scotch: Make some inputs native. 
* gnu/packages/math.scm (scotch)[inputs]: Move flex & bison from here...
[native-inputs]: ...to this new field.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2020-04-04 20:19:03 +02:00
R Veera Kumar
72c71d2497 gnu: Add qalculate-gtk. 
* gnu/packages/maths.scm (qalculate-gtk): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-03 16:26:38 +02:00
R Veera Kumar
70c98efaf6 gnu: Add libqalculate. 
* gnu/packages/maths.scm (libqalculate): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-04-03 16:26:38 +02:00
Jakub Kądziołka
8b87d095b3 gnu: z3: Fix build determinism. 
* gnu/packages/maths.scm (z3)[arguments]: Add a phase to set
  PYTHONHASHSEED=0.
 2020-03-29 20:35:33 +02:00
Tobias Geerinckx-Rice
53b9df20c1 gnu: Remove more packages deprecated for over almost a year. 
* gnu/packages/games.scm (armagetron-advanced)
(cataclysm-dark-days-ahead, gnubackgammon, l-abbaye-des-morts)
(the-battle-for-wesnoth, the-battle-for-wesnoth-server)
(project-starfighter, kiki-the-nano-bot, fish-fillets-ng)
(dungeon-crawl-stone-soup): Let's forget this ever happened.
* gnu/packages/emacs-xyz.scm (geiser, paredit, git-modes/old-name)
(magit, magit-svn, haskell-mode, emacs-emms-player-mpv, bbdb)
(ert-runner, groovy-emacs-modes): Remove variable.
* gnu/packages/engineering.scm (emacs-emms-player-simple-mpv)
(emacs-evil-ediff, emacs-evil-mu4e, emacs-wgrep-helm, ao): Likewise.
* gnu/packages/finance.scm (monero-core): Likewise.
* gnu/packages/gnome.scm (dungeon-crawl-stone-soup-tiles)
(tales-of-maj-eyal, battle-tanks, the-legend-of-edgar)
(gnome-tweak-tool): Likewise.
* gnu/packages/gnuzilla.scm (conkeror): Likewise.
* gnu/packages/guile-xyz.scm (mcron2): Likewise.
* gnu/packages/image.scm (pngcrunch): Likewise.
* gnu/packages/linux.scm (eudev-with-hwdb): Likewise.
* gnu/packages/maths.scm (qtoctave): Likewise.
* gnu/packages/package-management.scm (guile2.0-guix): Likewise.
* gnu/packages/php.scm (php-with-bcmath): Likewise.
* gnu/packages/python-xyz.scm (python-kivy-next, python2-kivy-next):
Likewise.
* gnu/packages/video.scm (livestreamer): Likewise.
* gnu/packages/virtualization.scm (lookingglass): Likewise.
* gnu/packages/vulkan.scm (vulkan-icd-loader): Likewise.
* gnu/packages/syndication.scm (newsbeuter): Likewise.
(newsboat)[description]: Remove historical footnote.
 2020-03-29 18:40:56 +02:00
Amin Bandali
c2cf286c62 Update email address and Savannah handle for Amin Bandali. 
* .mailmap, gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/fonts.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm,
gnu/packages/maths.scm, gnu/packages/pulseaudio.scm: Update my email address.
* build-aux/git-authenticate.scm: Update my Savannah handle.
 2020-03-28 16:30:07 -04:00
Nicolas Goaziou
255fb17b25 gnu: armadillo: Fix typo in description. 
* gnu/packages/maths.scm (armadillo): Fix spaces after "eg.".
 2020-03-28 21:27:33 +01:00
Kei Kebreau
6607aad53c gnu: wxmaxima: Update to 20.03.1. 
* gnu/packages/maths.scm (wxmaxima): Update to 20.03.1.
 2020-03-22 19:22:42 -04:00
Tobias Geerinckx-Rice
2aaa09f17d gnu: hdf-eos2: Use HTTPS home page. 
* gnu/packages/maths.scm (hdf-eos2)[home-page]: Use HTTPS.
 2020-03-21 03:09:51 +01:00
Tobias Geerinckx-Rice
d3be522036 gnu: openlibm: Use HTTPS home page. 
* gnu/packages/maths.scm (openlibm)[home-page]: Use HTTPS.
 2020-03-14 22:01:40 +01:00
Felix Gruber
6ceb771657 gnu: define dune-*-openmpi packages 
* gnu/packages/maths.scm (dune-common-openmpi, dune-geometry-openmpi,
dune-istl-openmpi, dune-typetree-openmpi, dune-uggrid-openmpi,
dune-grid-openmpi, dune-alugrid-openmpi, dune-subgrid-openmpi,
dune-localfunctions-openmpi, dune-functions-openmpi,
dune-pdelab-openmpi): New variables.
(add-openmpi-to-dune-package): New function to add openmpi to the
inputs of a dune-* package and replace all dune-* packages in its
input with the corresponding dune-*-openmpi package.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-14 17:54:34 +01:00
Felix Gruber
393dc1cc0b gnu: dune-*: remove openmpi dependency 
* gnu/packages/maths.scm (dune-*)[inputs]: Remove openmpi dependency.
  [arguments]: remove code to setup openmpi for tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-14 17:54:34 +01:00
Marius Bakke
b471337dea gnu: suitesparse: Build with cmake-minimal. 
* gnu/packages/maths.scm (suitesparse)[native-inputs]: Change from CMAKE to
CMAKE-MINIMAL.
 2020-03-14 11:55:33 +01:00
Felix Gruber
0a703c0486 gnu: dune-istl: Build with suitesparse 
* gnu/packages/maths.scm (dune-istl)[inputs]: Add suitesparse to build
additional solvers in dune-istl.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-12 11:52:38 +01:00
Felix Gruber
f1f9466e33 gnu: Add dune-subgrid 
* gnu/packages/maths.scm (dune-subgrid): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-12 11:52:38 +01:00
Felix Gruber
07ebb75d17 gnu: Add dune-uggrid. 
* gnu/packages/maths.scm (dune-uggrid): New variable.
(dune-grid)[propagated-inputs]: Add dune-uggrid dependency, so
that the UGGrid class in dune-grid can be used by packages that
have dune-grid as input.
(dune-functions)[arguments]: Enable tests that previously weren't
built as they require dune-uggrid.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-12 11:52:38 +01:00
Felix Gruber
a669f6e27b gnu: dune-*: set up MPI for tests 
* gnu/packages/maths.scm (dune-common, dune-grid, dune-istl,
dune-alugrid): [arguments]: correctly set up MPI instead of disabling
tests that require MPI.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-03-12 11:52:38 +01:00
Tobias Geerinckx-Rice
80fafdba1c gnu: speedcrunch: Use HTTPS home page. 
* gnu/packages/maths.scm (speedcrunch)[home-page]: Use HTTPS.
 2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice
5969598149 gnu: openblas: Use HTTPS home page. 
* gnu/packages/maths.scm (openblas)[home-page]: Use HTTPS.
 2020-03-07 12:48:18 +01:00
Kei Kebreau
1d3c6a31b5 gnu: wxmaxima: Update to 20.02.4. 
* gnu/packages/maths.scm (wxmaxima): Update to 20.02.4.
[arguments]: Enable tests and set #:test-target to "test".
[native-inputs]: Add xorg-server-for-tests.
 2020-03-06 15:04:34 -05:00
Felix Gruber
aac148a87b gnu: SuiteSparse: Update to 5.7.1. 
* gnu/packages/maths.scm (suitesparse): Update to 5.7.1.
[source]: The latest releases of SuiteSparse have only been published on GitHub.
Fetch from git tag as GitHub releases page only contains autogenerated tarballs
that guix lint complains about. Apply new patch for Mongoose's CMakeList.txt to
find SuiteSparse_config.
[arguments]: Add CMake flags used by new components GraphBLAS and Mongoose.
[native-inputs]: Add CMake and m4 needed to build GraphBLAS and Mongoose.
* gnu/packages/patches/suitesparse-mongoose-cmake.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-03-04 18:08:13 -05:00
Jakub Kądziołka
f6b4d395fd gnu: z3: Build the Python bindings 
* gnu/packages/maths.scm (z3)[arguments]: Add the --python and
  --pypkgdir flags to configure. To facilitate the latter, add
  (guix build python-build-system) to #:modules and #:imported-modules.
 2020-02-23 17:58:38 +01:00
Andreas Enge
b457f3cc16 gnu: Add vinci. 
* gnu/packages/maths.scm (vinci): New variable.
 2020-02-21 13:30:25 +01:00
Kei Kebreau
8a0dd289c5 gnu: octave, octave-cli: Update to 5.2.0. 
* gnu/packages/maths.scm (octave, octave-cli): Update to 5.2.0.
[inputs]: Add bdb.
 2020-02-10 14:43:06 -05:00
Eric Bavier
aa2e83cce2 gnu: superlu-dist: Update to 6.2.0. 
* gnu/packages/maths.scm (superlu-dist): Update to 6.2.0.
[source]: Update upstream url.  Remove mpi deprecations patch.
* gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2020-01-31 09:17:16 -06:00
Eric Bavier
48fe5c36a2 gnu: superlu: Update upstream url. 
* gnu/packages/maths.scm (superlu)[source,home-page]: Update url.
 2020-01-31 09:13:57 -06:00
Kei Kebreau
48446f0f94 gnu: wxmaxima: Update to 20.01.3. 
* gnu/packages/maths.scm (wxmaxima): Update to 20.01.3.
[home-page]: Update URL.
 2020-01-23 14:22:41 -05:00
Tobias Geerinckx-Rice
1e05e837c7 gnu: elemental: Update home page. 
* gnu/packages/maths.scm (elemental)[home-page]: Use repository home
page.
 2020-01-19 17:57:09 +01:00
Tobias Geerinckx-Rice
2299d83e2f gnu: petsc: Use HTTPS home page. 
* gnu/packages/maths.scm (petsc)[home-page, license]: Use HTTPS.
 2020-01-19 06:09:02 +01:00
Tobias Geerinckx-Rice
0a44f9c4e4 gnu: Use HTTPS for www.hdfgroup.org. 
* gnu/packages/maths.scm (hdf5)[home-page, license]: Use HTTPS.
(hdf-java, h5check)[source]: Likewise.
 2020-01-17 23:32:34 +01:00
Tobias Geerinckx-Rice
821aa687b4 gnu: netcdf: Use HTTPS home page. 
* gnu/packages/maths.scm (netcdf)[home-page]: Use HTTPS.
 2020-01-17 23:32:34 +01:00
Tobias Geerinckx-Rice
d5730000e2 gnu: scotch: Use HTTPS home page. 
* gnu/packages/maths.scm (scotch)[home-page]: Use HTTPS.
 2020-01-17 23:32:34 +01:00
Amin Bandali
a3143063ae Update email address for Amin Bandali. 
* .mailmap: Add name and email addresses for Amin Bandali.
* gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/fpga.scm, gnu/packages/lean.scm, gnu/packages/maths.scm:
Update email address for Amin Bandali.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2020-01-17 18:30:33 +01:00
Paul Garlick
09bad3cd42 gnu: python-slepc4py: Update to 3.11.0. 
* gnu/packages/maths.scm (python-slepc4py): Update to 3.11.0.
 2020-01-14 17:24:11 +00:00
Paul Garlick
f1cc312e15 gnu: python-petsc4py: Update to 3.11.0. 
* gnu/packages/maths.scm (python-petsc4py): Update to 3.11.0.
 2020-01-14 17:23:50 +00:00
Tobias Geerinckx-Rice
cb169aae81 gnu: hdf5@1.10: Update to 1.10.6. 
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.6.
 2020-01-10 23:47:28 +01:00
Konrad Hinsen
e6de152dc1 gnu: lapack: Update to 3.9.0. 
* gnu/packages/maths.scm (lapack): Update to 3.9.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-01-07 12:25:09 +01:00
Ludovic Courtès
94fea21b21 gnu: hdf5@1.10: Update to 1.10.5. 
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5.  Remove
"hdf5-mpi-deprecations.patch".
* gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-12-13 18:04:04 +01:00
Andreas Enge
0ffc2d537d gnu: Add lrslib. 
* gnu/packages/maths.scm (lrslib): New variable.
 2019-12-06 22:56:02 +01:00
Marius Bakke
33b59c1a3e Merge branch 'staging' 2019-12-04 20:12:41 +01:00
Tobias Geerinckx-Rice
dbef037ff4 gnu: z3: Update to 4.8.7. 
* gnu/packages/maths.scm (z3): Update to 4.8.7.
 2019-12-01 00:49:15 +01:00
Tobias Geerinckx-Rice
1ff64c503a gnu: nauty: Update to 2.6r12. 
* gnu/packages/maths.scm (nauty): Update to 2.6r12.
 2019-12-01 00:49:14 +01:00
Marius Bakke
0897ad7fac Merge branch 'master' into staging 2019-11-28 00:38:25 +01:00
Ricardo Wurmus
f3640e7395 gnu: Remove obsolete import of R build system module. 
* gnu/packages/maths.scm: Remove import of (guix build-system r).
 2019-11-27 18:29:32 +01:00
zimoun
ef7944b94f gnu: r-subplex: Move to (gnu packages cran). 
* gnu/packages/maths.scm (r-subplex): Move from here...
* gnu/packages/cran.scm (r-subplex): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-11-27 18:15:34 +01:00
zimoun
682768deb0 gnu: r-pracma: Move to (gnu packages cran). 
* gnu/packages/maths.scm (r-pracma): Move from here...
* gnu/packages/cran.scm (r-pracma): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-11-27 18:15:34 +01:00
zimoun
9bd56b1a77 gnu: r-desolve: Move to (gnu packages cran). 
* gnu/packages/maths.scm (r-desolve): Move from here...
* gnu/packages/cran.scm (r-desolve): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-11-27 18:15:34 +01:00
zimoun
0eb59d9eac gnu: r-quadprog: Move to (gnu packages cran). 
* gnu/packages/maths.scm (r-quadprog): Move from here...
* gnu/packages/cran.scm (r-quadprog): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-11-27 18:15:34 +01:00
Kei Kebreau
1e8609f238 gnu: wxmaxima: Update to 19.11.1. 
* gnu/packages/maths.scm (wxmaxima): Update to 19.11.1.
 2019-11-23 15:33:14 -05:00
Tobias Geerinckx-Rice
ec9a15c2eb gnu: r-quadprog: Update to 1.5-8. 
* gnu/packages/maths.scm (r-quadprog): Update to 1.5-8.
 2019-11-23 02:00:40 +01:00