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Commit Graph

16883 Commits

Author SHA1 Message Date
Ben Woodcroft 88682c9a72 gnu: fasttree: Update to 2.1.10.
* gnu/packages/bioinformatics.scm (fasttree): Update to 2.1.10.
2017-05-21 15:42:08 +01:00
Ben Woodcroft abc08cbae6 gnu: python-biom-format: Update to 2.1.6.
* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.6.
[propagated-inputs]: Add python-pandas.
2017-05-21 15:42:08 +01:00
Ben Woodcroft c522f57e22 gnu: python-future: Update to 0.16.0.
* gnu/packages/python.scm (python-future): Update to 0.16.0.
2017-05-21 15:42:08 +01:00
Marius Bakke 1d0aa4d8c2 gnu: ccid: Update to 1.4.27.
* gnu/packages/security-token.scm (ccid): Update to 1.4.27.
2017-05-21 16:37:54 +02:00
Marius Bakke 20d2e1faa9 gnu: fio: Update to 2.20.
* gnu/packages/benchmark.scm (fio): Update to 2.20.
[arguments]<#:phases>: Drop removed script from 'move-outputs' phase.
2017-05-21 16:33:42 +02:00
Marius Bakke 31044e6ff2 gnu: nano: Update to 2.8.4.
* gnu/packages/nano.scm (nano): Update to 2.8.4.
2017-05-21 16:17:01 +02:00
Marius Bakke 18f61e002b gnu: vim: Update to 8.0.0600.
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0600.
2017-05-21 14:34:45 +02:00
Marius Bakke 8b1ff6f0ab gnu: vim-full: Disable failing test.
* gnu/packages/vim.scm (vim-full)[arguments]<#:phases>: Add substitution.
2017-05-21 14:34:45 +02:00
Ludovic Courtès 9d0c24d1be tests: ssh: Use 'guile2.0-ssh'.
Fixes a regression introduced in 4d8806c3d6.

* gnu/tests/ssh.scm (run-ssh-test): Use GUILE2.0-SSH instead of GUILE-SSH.
2017-05-21 11:56:29 +02:00
Mark H Weaver 718448e176 gnu: linux-libre: Update to 4.11.2.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.11.2.
(%linux-libre-hash): Update hash.
2017-05-21 02:03:32 -04:00
Mark H Weaver a08691dfbb gnu: linux-libre: Remove CONFIG_SMC from x86 kernel configurations.
This removes support for the "shared memory communications over RDMA" (SMC-R)
networking protocol, which was added in 4.11 without the knowledge of the RDMA
maintainers, and which is thought to contain significant security flaws.  For
details, see <https://lwn.net/Articles/723081> and
<https://lwn.net/Articles/723070>.

* gnu/packages/aux-files/linux-libre/4.11-x86_64.conf,
gnu/packages/aux-files/linux-libre/4.11-i686.conf: Disable CONFIG_SMC.

723#	0001-gnu-libevent-2.0-Add-fix-from-upstream.patch
2017-05-21 01:47:09 -04:00
Mark H Weaver 519fd6c367 gnu: linux-libre@4.9: Update to 4.9.29.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.29.
2017-05-21 01:45:21 -04:00
Mark H Weaver ec8d69ebfe gnu: linux-libre@4.4: Update to 4.4.69.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.69.
2017-05-21 01:44:25 -04:00
Ludovic Courtès 324499184a gnu: unionfs-fuse-static: Remove 'unionfsctl' executable.
This avoids pulling in glibc & co.  Fixes a regression introduced in
2f861edf5c (the 'unionfsctl' executable
did not exist in unionfs-fuse 0.26).

* gnu/packages/linux.scm (unionfs-fuse/static)[arguments]
<post-install>: Remove 'unionfsctl' binary.
2017-05-21 01:17:11 +02:00
Marius Bakke a588e34e0d vm: Increase default disk size to account for ESP partition.
Fixes a test regression introduced by ecf5d53769.

* gnu/system/vm.scm (system-qemu-image/shared-store-script): 30MiB -> 70MiB.
2017-05-21 01:17:08 +02:00
Ludovic Courtès 9f8d6eb24a gnu: unionfs-fuse-static: Remove 'unionfsctl' executable.
This avoids pulling in glibc & co.  Fixes a regression introduced in
2f861edf5c (the 'unionfsctl' executable
did not exist in unionfs-fuse 0.26).

* gnu/packages/linux.scm (unionfs-fuse/static)[arguments]
<post-install>: Remove 'unionfsctl' binary.
2017-05-21 01:14:51 +02:00
Marius Bakke 9a1bfe7648 vm: Increase default disk size to account for ESP partition.
Fixes a test regression introduced by ecf5d53769.

* gnu/system/vm.scm (system-qemu-image/shared-store-script): 30MiB -> 70MiB.
2017-05-21 01:07:12 +02:00
Leo Famulari fda33e495b gnu: ghostscript: Add TODO comment about bundled jbig2dec.
* gnu/packages/ghostscript.scm (ghostscript): Add comment.
2017-05-20 16:26:29 -04:00
Leo Famulari 10cb88f85c gnu: jbig2dec: Fix CVE-2017-{7885,7975,7976}.
* gnu/packages/patches/jbig2dec-CVE-2017-7885.patch,
gnu/packages/patches/jbig2dec-CVE-2017-7975.patch,
gnu/packages/patches/jbig2dec-CVE-2017-7976.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/image.scm (jbig2dec)[source]: Use them.
2017-05-20 16:26:29 -04:00
Marius Bakke fefd4c197f gnu: pcsc-lite: Update to 1.8.21.
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.21.
2017-05-20 21:42:58 +02:00
Leo Famulari 12eecbf0bb gnu: icedtea@3: Add aarch32-drop.
* gnu/packages/java.scm (icedtea-8)[native-inputs]: Add aarch32-drop.
2017-05-20 14:57:22 -04:00
Leo Famulari db531f734a gnu: icedtea@3: Update to 3.4.0 [security fixes].
Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}.

* gnu/packages/java.scm (icedtea-8): Update to 3.4.0.
2017-05-20 14:57:22 -04:00
Leo Famulari b17bd261b0 gnu: imagemagick: Update to 6.9.8-6.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.8-6.
2017-05-20 14:06:20 -04:00
Ludovic Courtès 82ce81ba06 gnu: guix: Add 'guile2.0-guix'.
* gnu/packages/package-management.scm (guile2.0-guix): New variable.
2017-05-20 20:00:53 +02:00
Ludovic Courtès 74460d1121 gnu: libssh, guile-ssh: Add a "debug" output.
* gnu/packages/ssh.scm (libssh)[outputs]: New field.
(guile-ssh)[outputs]: New field.
2017-05-20 19:49:36 +02:00
Leo Famulari 7dccad95b6 gnu: icedtea@2: Update to 2.6.10 [security fixes].
Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}.

* gnu/packages/java.scm (icedtea-7): Update to 2.6.10.
2017-05-20 14:39:50 +02:00
Leo Famulari 6a9defd747 gnu: dropbear: Update to 2017.75 [fixes CVE-2017-{9078,9079}].
* gnu/packages/ssh.scm (dropbear): Update to 2017.75.
2017-05-20 14:39:50 +02:00
Ludovic Courtès 429046e9dd system: Use Guile 2.2 rather than 2.0 in %BASE-PACKAGES.
* gnu/system.scm (%base-packages): Change GUILE-2.0 to GUILE-2.2.
2017-05-20 14:39:49 +02:00
Marius Bakke 6520904b3e vm: Add UEFI loader to disk images.
* gnu/build/vm.scm (install-efi): New procedure.
(initialize-hard-disk): Generate EFI blob when ESP is present.
* gnu/system/vm.scm (qemu-image): Append 40MiB EFI System Partition.

(cherry picked from commit ecf5d53769)
2017-05-20 10:57:00 +02:00
Marius Bakke 03119da211 vm: Support creating FAT partitions.
* gnu/build/vm.scm (create-ext-file-system, create-fat-file-system): New procedures.
(format-partition): Use them. Error for unknown file systems.
* gnu/system/vm.scm (qemu-image): Include DOSFSTOOLS.
* gnu/system/linux-initrd.scm (base-initrd): Always add nls_is8859-1.ko.
2017-05-20 10:20:35 +02:00
Marius Bakke fd5a30ab7b vm: Support arbitrary partition flags.
* gnu/build/vm.scm (<partition>): Change BOOTABLE? to FLAGS.
(initialize-partition-table): Pass each flag to parted.
(initialize-hard-disk): Locate boot partition.
* gnu/system/vm.scm (qemu-image): Adjust partition flags.
2017-05-20 10:17:52 +02:00
Ludovic Courtès c383dc520f gnu: guile-ssh: Fix potential double-free/use-after-free issue.
Fixes <http://bugs.gnu.org/26976>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/packages/patches/guile-ssh-double-free.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (guile-ssh)[source](patches): Add it.
2017-05-20 10:17:49 +02:00
Ludovic Courtès 51fe9cd38d services: user-homes: Do not create home directories marked as no-create.
Fixes a bug whereby GuixSD would create the /nonexistent directory, from
user 'nobody', even though it has 'create-home-directory?' set to #f.

* gnu/build/activation.scm (activate-users+groups): Add comment for
\#:create-home?.
(activate-user-home)[ensure-user-home]: Skip when CREATE-HOME? is #f or
SYSTEM? is #t.
* gnu/tests/base.scm (run-basic-test)["no extra home directories"]: New
tests.
2017-05-20 10:17:10 +02:00
Marius Bakke f3f8938fe0 install: Enable SSH in installation image.
* gnu/system/install.scm (%installation-services): Add OPENSSH-SERVICE-TYPE.
* doc/guix.texi (Preparing for Installation)[Networking]: Document it.
2017-05-20 10:16:37 +02:00
Marius Bakke e13b55ae79 services: openssh: Don't depend on networking.
* gnu/services/ssh.scm (openssh-shepherd-service): Drop requirement.
2017-05-20 10:16:34 +02:00
Leo Famulari a6c642ef63 maint: The 'release' target builds a VM image.
* gnu/system/examples/vm-image.tmpl: New file.
* Makefile.am (GUIXSD_VM_SYSTEMS, GUIXSD_VM_IMAGE_BASE,
GUIXSD_VM_IMAGE_SIZE): New variables.
(release): Add logic to build a VM image.
(EXAMPLES): Add 'gnu/system/examples/vm-image.tmpl'.
* doc/guix.texi (Running GuixSD in a VM, Installing GuixSD in a VM): Mention the
pre-built VM image.
2017-05-20 10:16:23 +02:00
Ludovic Courtès 56a03975eb gnu: aspell: 'dict-dir' set to ~/.guix-profile/lib/aspell or $ASPELL_DICT_DIR.
See <https://bugs.gnu.org/25836> for background.

* gnu/packages/patches/aspell-default-dict-dir.patch: New file.
* gnu/packages/aspell.scm (aspell)[source](patches): New field.
[native-search-paths]: New field.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-05-20 10:16:14 +02:00
Leo Famulari c90fd5564c gnu: qemu: Fix CVE-2017-7493.
* gnu/packages/patches/qemu-CVE-2017-7493.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/qemu.scm (qemu)[source]: Use it.
2017-05-20 10:15:53 +02:00
Ricardo Wurmus d03b34cf19 gnu: glibc/hurd: Do not apply i686 patch.
This is a follow-up to commit c2e4f14ac8.

* gnu/packages/base.scm (glibc/hurd)[arguments]: Override pre-configure phase
with a copy that does not include the patch application.
2017-05-20 10:15:31 +02:00
Ricardo Wurmus 5d6e38a6c3 gnu: glibc/hurd: Use modify-phases syntax.
* gnu/packages/base.scm (glibc/hurd)[arguments]: Use modify-phases syntax.
2017-05-20 10:15:28 +02:00
Efraim Flashner ed5e3ab8ab gnu: tor: Update to 0.3.0.7.
* gnu/packages/tor.scm (tor): Update to 0.3.0.7.
2017-05-20 10:15:00 +02:00
Leo Famulari d30ce4a7e2 gnu: icedtea@2: Update to 2.6.10 [security fixes].
Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}.

* gnu/packages/java.scm (icedtea-7): Update to 2.6.10.
2017-05-19 21:40:26 -04:00
ng0 cc5a76a74c gnu: Add loksh.
* gnu/packages/shells.scm (loksh): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-20 02:42:04 +02:00
Leo Famulari 70f8242b13 gnu: dropbear: Update to 2017.75 [fixes CVE-2017-{9078,9079}].
* gnu/packages/ssh.scm (dropbear): Update to 2017.75.
2017-05-19 20:32:26 -04:00
Brendan Tildesley 1326166ebe gnu: calibre: Don't create uninstaller.
* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>. Add 'patch-source' phase.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
Brendan Tildesley affaf98f77 gnu: calibre: Add exhaustive license list.
* gnu/packages/ebook.scm (calibre): Add exhaustive license list.
(chmlib)[license]: Use license: prefix.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
Brendan Tildesley 9b7dcc2703 gnu: calibre: Add missing dependencies.
* gnu/packages/ebook.scm (calibre)[inputs]: Add poppler, python2-dnspython,
and python2-pygments.
[arguments]: Remove old TODO comments. libwmf and psutil are no longer used.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
Brendan Tildesley eeba7d3a07 gnu: calibre: Unbundle chardet.
* gnu/packages/ebook.scm (calibre)[source]: Delete bundled chardet.
[inputs]: Add python2-chardet.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
Brendan Tildesley b3399a0985 gnu: calibre: Unbundle liberation fonts.
*gnu/packages/ebook.scm (calibre)[source]: Delete liberation .ttf files.
[native-inputs]: Add font-liberation.
[arguments]: Calibre still references the bundled fonts, so we install the
packaged fonts to the directory the bundled fonts would have been.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00
Brendan Tildesley 29ec085170 gnu: calibre: Unbundle python2-markdown.
* gnu/packages/ebook.scm (calibre)[snippet]: Replace python references to
bundled markdown with packaged. Remove markdown from source.
[inputs]: Add python2-markdown as a dependency.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-05-19 23:49:21 +02:00