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43,812 Commits 76 Branches 40 Tags
5bf7eb49f60439b8efe260d4b2e06190c83eef69
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35727 Commits

Author SHA1 Message Date
Ricardo Wurmus
5bf7eb49f6 gnu: r-rots: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.12.0.
 2019-05-06 00:14:48 +02:00
Ricardo Wurmus
07252952b7 gnu: r-glimma: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.12.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus
40f0ee43a0 gnu: r-goseq: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.36.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus
7a5d729af1 gnu: r-ctc: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.58.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus
1236ce8e22 gnu: r-genomicinteractions: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.18.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus
176a264c7c gnu: r-interactionset: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.12.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus
eff6b2eb12 gnu: r-riboseqr: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.18.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus
7d5acf7a25 gnu: r-riboprofiling: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.14.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus
1ddd4af5a0 gnu: r-chipcomp: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.14.0.
 2019-05-06 00:14:47 +02:00
Ricardo Wurmus
c38de81594 gnu: r-bayseq: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.18.0.
 2019-05-06 00:14:46 +02:00
Ricardo Wurmus
4f4bed7de5 gnu: r-qdnaseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.20.0.
 2019-05-06 00:14:46 +02:00
Ricardo Wurmus
2317730994 gnu: r-cghcall: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.46.0.
 2019-05-06 00:14:46 +02:00
Ricardo Wurmus
8efb842f11 gnu: r-cghbase: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.44.0.
 2019-05-06 00:14:46 +02:00
Ricardo Wurmus
bcb95b7aac gnu: r-marray: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-marray): Update to 1.62.0.
 2019-05-06 00:14:46 +02:00
Ricardo Wurmus
a61bcb28f7 gnu: r-graph: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.62.0.
 2019-05-06 00:14:46 +02:00
Ricardo Wurmus
588b63c2af gnu: r-multtest: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.40.0.
 2019-05-06 00:14:45 +02:00
Ricardo Wurmus
0968a44874 gnu: r-ripseeker: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.24.0.
 2019-05-06 00:14:45 +02:00
Ricardo Wurmus
4c221b3bbf gnu: r-diffbind: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.12.0.
[propagated-inputs]: Add r-rhtslib; remove r-zlibbioc.
 2019-05-06 00:14:45 +02:00
Ricardo Wurmus
e02162f7ba gnu: r-qvalue: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.16.0.
 2019-05-06 00:14:45 +02:00
Ricardo Wurmus
3e1bc88c1f gnu: r-geneplotter: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.62.0.
 2019-05-06 00:14:45 +02:00
Ricardo Wurmus
4b53d55e98 gnu: r-regioner: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.0.
 2019-05-06 00:14:45 +02:00
Ricardo Wurmus
43a23a0733 gnu: r-hpar: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.26.0.
 2019-05-06 00:14:44 +02:00
Ricardo Wurmus
0c53332a27 gnu: r-annotate: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.62.0.
 2019-05-06 00:14:44 +02:00
Ricardo Wurmus
81a1c45df5 gnu: r-biocgenerics: Update to 0.30.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.30.0.
 2019-05-06 00:14:44 +02:00
Ricardo Wurmus
3addf736d5 gnu: r-systempiper: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.0.
[propagated-inputs]: Replace r-batchjobs with r-batchtools; add r-yaml.
 2019-05-06 00:14:44 +02:00
Ricardo Wurmus
9bcbca135b gnu: r-rsamtools: Update to 2.0.0. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.0.
[propagated-inputs]: Add r-rhtslib.
 2019-05-06 00:14:44 +02:00
Ricardo Wurmus
82d9340b0c gnu: r-impute: Update to 1.58.0. 
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.58.0.
[inputs]: Move gfortran from here...
[native-inputs]: ...to here.
 2019-05-06 00:14:44 +02:00
Ricardo Wurmus
2b4ac1d77e gnu: r-rcas: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.10.0.
[propagated-inputs]: Add ghc-pandoc.
 2019-05-06 00:14:43 +02:00
Ricardo Wurmus
8322c860f9 gnu: r-methylkit: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.10.0.
[propagated-inputs]: Add r-mgcv.
 2019-05-06 00:14:43 +02:00
Ricardo Wurmus
b173dbe617 gnu: r-annotationhub: Update to 2.16.0. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.16.0.
[propagated-inputs]: Add r-biocfilecache, r-dplyr, and r-rappdirs.
 2019-05-06 00:14:43 +02:00
Ricardo Wurmus
a8abc8dd3a gnu: r-fastseg: Update to 1.30.0. 
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.30.0.
 2019-05-06 00:14:43 +02:00
Ricardo Wurmus
e699e8e599 gnu: r-keggrest: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.24.0.
 2019-05-06 00:14:43 +02:00
Ricardo Wurmus
c798455d87 gnu: r-gage: Update to 2.34.0. 
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.34.0.
 2019-05-06 00:14:43 +02:00
Ricardo Wurmus
d4ef1d59cc gnu: r-genomicfiles: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.20.0.
 2019-05-06 00:14:43 +02:00
Ricardo Wurmus
70a3e4499d gnu: r-complexheatmap: Update to 2.0.0. 
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 2.0.0.
[propagated-inputs]: Add r-clue and r-png.
 2019-05-06 00:14:43 +02:00
Ricardo Wurmus
e2cb23404c gnu: r-dirichletmultinomial: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.26.0.
 2019-05-06 00:14:42 +02:00
Ricardo Wurmus
0af6efa3c5 gnu: r-ensembldb: Update to 2.8.0. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.8.0.
 2019-05-06 00:14:42 +02:00
Ricardo Wurmus
96f98c5b72 gnu: r-organismdbi: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.26.0.
 2019-05-06 00:14:42 +02:00
Ricardo Wurmus
a98c3b4ae4 gnu: r-biovizbase: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.32.0.
 2019-05-06 00:14:42 +02:00
Ricardo Wurmus
d38fbacad1 gnu: r-ggbio: Update to 1.32.0. 
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.32.0.
 2019-05-06 00:14:42 +02:00
Ricardo Wurmus
623be1a443 gnu: r-gqtlbase: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.16.0.
 2019-05-06 00:14:42 +02:00
Ricardo Wurmus
ed7de45655 gnu: r-snpstats: Update to 1.34.0. 
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.34.0.
 2019-05-06 00:14:42 +02:00
Ricardo Wurmus
3c5f5b4154 gnu: r-erma: Update to 1.0.0. 
* gnu/packages/bioinformatics.scm (r-erma): Update to 1.0.0.
 2019-05-06 00:14:41 +02:00
Ricardo Wurmus
89ba9a7226 gnu: r-ldblock: Update to 1.14.0. 
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.14.0.
 2019-05-06 00:14:41 +02:00
Ricardo Wurmus
a349d57a46 gnu: r-gqtlstats: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.16.0.
 2019-05-06 00:14:41 +02:00
Ricardo Wurmus
105d9e2cb4 gnu: r-gviz: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.28.0.
 2019-05-06 00:14:41 +02:00
Ricardo Wurmus
1b454f9f69 gnu: r-gwascat: Update to 2.16.0. 
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.16.0.
[propagated-inputs]: Remove r-annotationhub, r-ggbio, r-ggplot2, r-gqtlstats,
r-graph, r-gviz, r-snpstats, r-summarizedexperiment, and r-variantannotation.
 2019-05-06 00:14:41 +02:00
Ricardo Wurmus
256609eb46 gnu: r-sushi: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.22.0.
 2019-05-06 00:14:41 +02:00
Ricardo Wurmus
7705165882 gnu: r-fithic: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.10.0.
 2019-05-06 00:14:40 +02:00
Ricardo Wurmus
e998a26e1d gnu: r-hitc: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.28.0.
 2019-05-06 00:14:40 +02:00