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66e445448ce17a50a77dbd8aed14fb4186714f27
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166196 Commits

Author SHA1 Message Date
Ricardo Wurmus
66e445448c gnu: r-rcppspdlog: Update to 0.0.26. 
* gnu/packages/cran.scm (r-rcppspdlog): Update to 0.0.26.

Change-Id: Ie99e7ed1139f87d0b6e3ed3fbada09833338239b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:49 +01:00
Ricardo Wurmus
40b3b90780 gnu: r-ggtangle: Update to 0.1.1. 
* gnu/packages/cran.scm (r-ggtangle): Update to 0.1.1.

Change-Id: I0d0e5a796720c3d90cb5c31be28efe157bae9acc
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:48 +01:00
Ricardo Wurmus
ccc10b4e73 gnu: r-secretbase: Update to 1.1.1. 
* gnu/packages/cran.scm (r-secretbase): Update to 1.1.1.

Change-Id: I1f1d54fbca21f7e7276cfc42e619029b5c50b285
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:47 +01:00
Ricardo Wurmus
d51827d7b3 gnu: r-tglkmeans: Update to 0.5.8. 
* gnu/packages/cran.scm (r-tglkmeans): Update to 0.5.8.
[propagated-inputs]: Remove r-dorng.
[native-inputs]: Add r-withr.

Change-Id: Ib1371d359250298bcbbc0fee983fbd59aac1bcc5
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:46 +01:00
Ricardo Wurmus
bbac5c8c2e gnu: r-grandr: Update to 0.2.7. 
* gnu/packages/cran.scm (r-grandr): Update to 0.2.7.

Change-Id: I141309efd1c54fe5bb129fb15483910cd4384b04
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:45 +01:00
Ricardo Wurmus
2e72835133 gnu: r-polylabelr: Update to 1.0.0. 
* gnu/packages/cran.scm (r-polylabelr): Update to 1.0.0.

Change-Id: I25934e0fab6a4cff35434e501fa2f670239594e9
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:45 +01:00
Ricardo Wurmus
845763623f gnu: r-survival: Update to 3.8-6. 
* gnu/packages/cran.scm (r-survival): Update to 3.8-6.

Change-Id: I7387ae6c17a018691241bd87d2a8ceec4039be0e
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:44 +01:00
Ricardo Wurmus
db3f89a4c9 gnu: r-snowflakeauth: Update to 0.2.1. 
* gnu/packages/cran.scm (r-snowflakeauth): Update to 0.2.1.

Change-Id: If80238894dcd41d3a92fb9175098083b07298bbe
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:43 +01:00
Ricardo Wurmus
a3dc6a00af gnu: r-ggpp: Update to 0.6.0. 
* gnu/packages/cran.scm (r-ggpp): Update to 0.6.0.
[propagated-inputs]: Remove r-magrittr.

Change-Id: I2b63310594f4483fa4b65300d6b9c0d43250fc72
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:42 +01:00
Ricardo Wurmus
e968154525 gnu: r-clock: Update to 0.7.4. 
* gnu/packages/cran.scm (r-clock): Update to 0.7.4.

Change-Id: I8be3a7dfeb19ea363723f3ffce541e172d1bfaac
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:41 +01:00
Ricardo Wurmus
98fbe17329 gnu: r-benchmarkmedata: Update to 2.0.0. 
* gnu/packages/cran.scm (r-benchmarkmedata): Update to 2.0.0.
[propagated-inputs]: Add r-rlang.

Change-Id: Ief524aa780b66fd5468a0c14defb3347fb645e55
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:40 +01:00
Ricardo Wurmus
285548c244 gnu: r-prabclus: Update to 2.3-5. 
* gnu/packages/cran.scm (r-prabclus): Update to 2.3-5.
[native-inputs]: Remove r-spdep.

Change-Id: I740edcdd761d25daa822ace4c3136ed69289d383
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:40 +01:00
Ricardo Wurmus
24093170b8 gnu: r-fpc: Update to 2.2-14. 
* gnu/packages/cran.scm (r-fpc): Update to 2.2-14.

Change-Id: I5e38e38d331a1b9a5d729659a2944f62c93116be
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:39 +01:00
Ricardo Wurmus
ed3a37afd9 gnu: r-blob: Update to 1.3.0. 
* gnu/packages/cran.scm (r-blob): Update to 1.3.0.

Change-Id: I4364109ba8d6e121ee8de8419b99db68d5509e50
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:38 +01:00
Ricardo Wurmus
ed1ea054c5 gnu: r-netgsa: Update to 4.0.7. 
* gnu/packages/bioconductor.scm (r-netgsa): Update to 4.0.7.
[propagated-inputs]: Remove r-org-hs-eg-db.

Change-Id: I3e40676dc5e4fdecf988c003d2dd2f338526e317
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:37 +01:00
Ricardo Wurmus
da5b18d10c gnu: r-stringfish: Update to 0.18.0. 
* gnu/packages/cran.scm (r-stringfish): Update to 0.18.0.
[properties]: Record updater-ignored-native-inputs.
[inputs]: Remove tbb-2020.
[native-inputs]: Add r-dplyr, r-rlang, and r-stringr.

Change-Id: If64356fc2f989e689fe4d6903b99e1d33ab6aad4
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:36 +01:00
Ricardo Wurmus
d4c16e84cd gnu: r-extradistr: Update to 1.10.0.2. 
* gnu/packages/cran.scm (r-extradistr): Update to 1.10.0.2.
[propagated-inputs]: Add r-rcpparmadillo.

Change-Id: I764745d71a08ba8ad54c47482062f2e7714dcec4
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:36 +01:00
Ricardo Wurmus
3a062d3c17 gnu: r-stringdist: Update to 0.9.17. 
* gnu/packages/cran.scm (r-stringdist): Update to 0.9.17.

Change-Id: I7c4ffcb53de537833eb00792023b316c5e61aa4d
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:35 +01:00
Ricardo Wurmus
2913ba1ead gnu: r-vctrs: Update to 0.7.0. 
* gnu/packages/cran.scm (r-vctrs): Update to 0.7.0.

Change-Id: Icdac7c8c9906a820a62a1cdc4b5bfe6114ba3fc7
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:34 +01:00
Ricardo Wurmus
900790d326 gnu: r-manipulatewidget: Update to 0.11.2. 
* gnu/packages/cran.scm (r-manipulatewidget): Update to 0.11.2.
[native-inputs]: Add r-leaflet.

Change-Id: I1a342a002ffe825d1327d01a17d2ea53488244e5
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:33 +01:00
Ricardo Wurmus
6bc9dc960c gnu: r-rcppannoy: Update to 0.0.23. 
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.23.
[native-inputs]: Add r-rcpp and r-tinytest.

Change-Id: I8d5040fab624dca8ca68478a12ef90695b9b8270
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:32 +01:00
Ricardo Wurmus
612312526f gnu: r-rnifti: Update to 1.9.0. 
* gnu/packages/cran.scm (r-rnifti): Update to 1.9.0.
[native-inputs]: Add r-testthat.

Change-Id: Idcb511e46f96b32feed2374a867e0f620aee79be
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:31 +01:00
Ricardo Wurmus
c927e30c3b gnu: r-zarrarray: Update to 1.0-2.3cc3e6a. 
* gnu/packages/bioinformatics.scm (r-zarrarray): Update to 1.0-2.3cc3e6a.
[properties]: Record updater-extra-native-inputs.
[propagated-inputs]: Remove r-pizzarr; add r-rarr.
[native-inputs]: Add r-testthat.
[arguments]: Disable tests.

Change-Id: Id3a9b564c21ee779e4a46e02cd478d06d9dd5bc9
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:31 +01:00
Ricardo Wurmus
bb776f53b1 gnu: r-pizzarr: Update to 0.1.0-2.5f47057. 
* gnu/packages/bioinformatics.scm (r-pizzarr): Update to 0.1.0-2.5f47057.

Change-Id: Id5f24214e67dcc00093ceaa1d6f2297b6146aa51
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:30 +01:00
Ricardo Wurmus
8762fea566 gnu: r-qs: Skip another test. 
* gnu/packages/cran.scm (r-qs)[arguments]: Remove qattributes_testing.R.

Change-Id: Ia2b6cb3c9ed959ff3c42c0bd52cae1615d0bd319
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:29 +01:00
Ricardo Wurmus
8996e7cfc3 gnu: r-zarrdataframe: Update to 0.0.0-2.84c7db2. 
* gnu/packages/bioinformatics.scm (r-zarrdataframe): Update to
0.0.0-2.84c7db2.
[properties]: Record updater-extra-native-inputs.
[propagated-inputs]: Remove r-pizzarr and r-zarrarray; add r-rarr.
[native-inputs]: Add r-testthat.

Change-Id: I65e3f52f85ccd297ddab320b4d951023d226bcdf
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:28 +01:00
Ricardo Wurmus
d7d5770b54 gnu: Add r-rarr. 
* gnu/packages/bioconductor.scm (r-rarr): New variable.

Change-Id: Ia302b53f601295663246e66b9587c427a6ffd926
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:27 +01:00
Ricardo Wurmus
371b7a706f gnu: r-signac: Update to 1.16.0-1.f5a8411. 
* gnu/packages/bioinformatics.scm (r-signac): Update to 1.16.0-1.f5a8411.
[properties]: Record updater-extra-native-inputs.
[propagated-inputs]: Add r-lifecycle and r-rlang.

Change-Id: Iadf5bb7cb05e691ea601caad91a90ad45dde7726
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:26 +01:00
Ricardo Wurmus
4847b6e749 gnu: r-msnid: Disable one test. 
* gnu/packages/bioconductor.scm (r-msnid)[arguments]: Add phase
'disable-bad-tests.

Change-Id: I188a069530c1aa7da663b438a079b736866e8bb5
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:25 +01:00
Ricardo Wurmus
723d092168 gnu: r-tximeta: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.28.1.

Change-Id: Id10c5bdd793e8efcb051bce989fb06519bf0e739
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:25 +01:00
Ricardo Wurmus
9e64120bd3 gnu: r-bayesspace: Update to 1.20.2. 
* gnu/packages/bioconductor.scm (r-bayesspace): Update to 1.20.2.

Change-Id: Ibec763f651410d4943e46abb2ea1e97870fa79cb
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:24 +01:00
Ricardo Wurmus
0cf641866f gnu: r-mscoreutils: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.22.1.

Change-Id: I6b53479c8388babf1fe039ce34770e9ef2f7f2db
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:23 +01:00
Ricardo Wurmus
18f562a346 gnu: r-sparsearray: Update to 1.10.8. 
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.10.8.

Change-Id: I4d9b5eba4dbc7efdb779770249fb0a904700fcd2
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:22 +01:00
Ricardo Wurmus
4957fe8545 gnu: r-h5mread: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-h5mread): Update to 1.2.1.

Change-Id: I5a794952dffa1440516c82daebf5ee2e655fff1d
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:21 +01:00
Ricardo Wurmus
c18bab03af gnu: r-s4arrays: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.10.1.

Change-Id: Idd461cf7717c8d5ed2563c4649a0eb29254a1077
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:21 +01:00
Ricardo Wurmus
1f852c3ca5 gnu: r-bioccheck: Update to 1.46.3. 
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.46.3.

Change-Id: Ib223054930edbf8220b4fbffc0847e712ef14748
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:20 +01:00
Ricardo Wurmus
6cbb6a13ce gnu: r-ucsc-utils: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-ucsc-utils): Update to 1.6.1.

Change-Id: Idef0e80e438b58f47b272ecf1c1559070a5b3160
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:19 +01:00
Ricardo Wurmus
9953fd5c28 gnu: r-variancepartition: Update to 1.40.1. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.40.1.
[propagated-inputs]: Add r-reformulas.

Change-Id: Id6b3920b2d201249a55ccc7440e63b12039011a8
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:18 +01:00
Ricardo Wurmus
41e55358ff gnu: r-flowworkspace: Update to 4.22.1. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.22.1.

Change-Id: Ie25dc585234ca7f91fcbbc8782663eecd23e7f1a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:17 +01:00
Ricardo Wurmus
ea8f7de008 gnu: r-ggcyto: Update to 1.38.1. 
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.38.1.

Change-Id: Idb7f65900f13935b1e2195ab75107a24b38794c4
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:17 +01:00
Ricardo Wurmus
9f298503bd gnu: r-flowcore: Update to 2.22.1. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.22.1.

Change-Id: I39861ca4db2858cdf872124935860436eebb4d0c
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:16 +01:00
Ricardo Wurmus
e72f0cdaa6 gnu: r-wppi: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-wppi): Update to 1.18.0.

Change-Id: I2cca7f805fd74973fdc2046ccaa151be8732248d
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:15 +01:00
Ricardo Wurmus
7ca8b99a34 gnu: r-yapsa: Update to 1.36.1. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.36.1.

Change-Id: Ie96ba3c80116ca6174cc3b3265b220229b3c804d
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:14 +01:00
Ricardo Wurmus
448dc86928 gnu: r-clusterprofiler: Update to 4.18.4. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.18.4.

Change-Id: I9672e94f8ff1d0c91a5464c9c69910983756d53e
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:13 +01:00
Ricardo Wurmus
9694b9e642 gnu: r-enrichplot: Update to 1.30.4. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.30.4.
[propagated-inputs]: Remove r-magrittr; add r-tidydr.

Change-Id: I87d3866091c21706dbeb2f0e5f3cbeee0169bbab
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:12 +01:00
Ricardo Wurmus
454c8a9693 gnu: r-fgsea: Update to 1.36.2. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.36.2.

Change-Id: If6e95a2a2d86a21533059b2e8d393ea99b0cd94a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:12 +01:00
Ricardo Wurmus
47a76c5c39 gnu: r-ggtree: Update to 4.0.4. 
* gnu/packages/bioconductor.scm (r-ggtree): Update to 4.0.4.

Change-Id: I30dd4c7202921e2985cdba14203af81a0999eb79
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:11 +01:00
Ricardo Wurmus
1dc8af9bce gnu: r-graph: Update to 1.88.1. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.88.1.

Change-Id: Ib9c224219e1cdfc88317dbd1ed603fbd5cf27737
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:10 +01:00
Ricardo Wurmus
10134e4001 gnu: r-zellkonverter: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.20.1.

Change-Id: I770fb48f3b4f86a41a47e71987b67c86f97bd8bc
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:09 +01:00
Ricardo Wurmus
6a8b446d0a gnu: r-tximport: Update to 1.38.2. 
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.38.2.

Change-Id: I2fbda6da6a535d56ea69f6e7a2937e5a3f838e62
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:29:08 +01:00