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85,535 Commits 76 Branches 40 Tags
6a5e5bb9e2fd7403d7c70f3bbbc855559559c16b
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73135 Commits

Author SHA1 Message Date
Ricardo Wurmus
6a5e5bb9e2 gnu: r-biodb: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.2.1.
 2021-11-18 13:18:01 +00:00
Ricardo Wurmus
13f8140290 gnu: r-chromstar: Update to 1.20.2. 
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.20.2.
 2021-11-18 13:18:00 +00:00
Ricardo Wurmus
34d17d5f62 gnu: r-scran: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.22.1.
 2021-11-18 13:18:00 +00:00
Ricardo Wurmus
0f72bdada5 gnu: r-hdf5array: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.22.1.
 2021-11-18 13:18:00 +00:00
Ricardo Wurmus
ddb9d228b4 gnu: r-s4vectors: Update to 0.32.2. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.2.
 2021-11-18 13:18:00 +00:00
Ricardo Wurmus
ef5bbc3416 gnu: r-biocset: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.8.1.
 2021-11-18 13:18:00 +00:00
Ricardo Wurmus
3cfeeace83 gnu: r-biocpkgtools: Update to 1.12.2. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.12.2.
 2021-11-18 13:17:59 +00:00
Ricardo Wurmus
6350413325 gnu: r-mixomics: Update to 6.18.0. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.18.0.
 2021-11-18 13:17:59 +00:00
Ricardo Wurmus
a03c84244d gnu: r-rsubread: Update to 2.8.1. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.1.
 2021-11-18 13:17:59 +00:00
Ricardo Wurmus
d30d9c6001 gnu: r-geoquery: Update to 2.62.1. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.1.
[propagated-inputs]: Add r-r-utils.
 2021-11-18 13:17:59 +00:00
Ricardo Wurmus
f4b108d872 gnu: r-icobra: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.22.1.
 2021-11-18 13:17:58 +00:00
Ricardo Wurmus
7e9a13d789 gnu: r-ggtree: Update to 3.2.1. 
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.2.1.
 2021-11-18 13:17:58 +00:00
Ricardo Wurmus
e52eb93765 gnu: r-treeio: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.18.1.
 2021-11-18 13:17:58 +00:00
Ricardo Wurmus
34ba8b256b gnu: r-systempiper: Update to 2.0.1. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.1.
 2021-11-18 13:17:58 +00:00
Ricardo Wurmus
6b1375d3af gnu: r-msnbase: Update to 2.20.1. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.1.
 2021-11-18 13:17:58 +00:00
Ricardo Wurmus
f917fa4e50 gnu: r-ensembldb: Update to 2.18.2. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.2.
 2021-11-18 13:17:57 +00:00
Ricardo Wurmus
30038c5738 gnu: r-chipseeker: Update to 1.30.2. 
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.2.
 2021-11-18 13:17:57 +00:00
Ricardo Wurmus
443ed83bc3 gnu: r-annotationdbi: Update to 1.56.2. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.56.2.
 2021-11-18 13:17:57 +00:00
Nicolas Goaziou
039c3848c3 gnu: wireshark: Update to 3.4.10. 
* gnu/packages/networking.scm (wireshark): Update to 3.4.10.
 2021-11-18 09:18:41 +01:00
Nicolas Goaziou
f4aa543f74 gnu: emacs-elfeed-score: Update to 1.2.0. 
* gnu/packages/emacs-xyz.scm (emacs-elfeed-score): Update to 1.2.0.
 2021-11-18 09:13:22 +01:00
zimoun
7537ec816f gnu: coq-stdpp: Adjust '#:make-flags'. 
* gnu/packages/coq.scm (coq-stdpp)[arguments]<#:make-flags>: Set install
destination.
<#:phases>: Remove replace 'install.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2021-11-18 04:30:41 +01:00
zimoun
4423caece6 gnu: coq-equations: Adjust '#:make-flags'. 
* gnu/packages/coq.scm (coq-equations)[arguments]<#:make-flags>: Set install
destination.
<#:phases>: Remove replace 'install.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2021-11-18 04:25:38 +01:00
zimoun
5d7d64ff85 gnu: coq-autosubst: Adjust '#:make-flags'. 
* gnu/packages/coq.scm (coq-autosubst)[arguments]<#:make-flags>: Set install
destination.
<#:phases>: Remove replace 'install.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2021-11-18 04:22:21 +01:00
zimoun
7b93c6d777 gnu: coq-mathcomp: Adjust '#:make-flags'. 
* gnu/packages/coq.scm (coq-mathcomp)[arguments]<#:make-flags>: Set install
destination.
<#:phases>: Remove replace 'install.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2021-11-18 04:08:08 +01:00
zimoun
2d60af4d6d gnu: Add coq-semantics. 
* gnu/packages/coq.scm (coq-semantics): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2021-11-18 04:08:00 +01:00
Vagrant Cascadian
e930d4a747 gnu: perl-tie-handle-offset: Fix typo. 
* gnu/packages/perl.scm (perl-tie-handle-offset)[description]: Fix "This
  module" typo.
 2021-11-17 17:46:13 -08:00
Vagrant Cascadian
67900b9555 gnu: perl-business-ismn: Fix typo. 
* gnu/packages/perl.scm (perl-business-ismn)[description]: Fix "This module"
  typo.
 2021-11-17 17:46:05 -08:00
Vagrant Cascadian
e52032ac1d gnu: perl-business-issn: Fix typo. 
* gnu/packages/perl.scm (perl-business-issn)[description]: Fix "This module"
  typo.
 2021-11-17 17:46:01 -08:00
Vagrant Cascadian
f4f93b38aa gnu: perl-business-isbn: Fix typo. 
* gnu/packages/perl.scm (perl-business-isbn)[description]: Fix "This module"
  typo.
 2021-11-17 17:45:53 -08:00
Vagrant Cascadian
8f6ac12fe4 gnu: perl-test-dir: Fix typo. 
* gnu/packages/perl-check.scm (perl-test-dir)[description]: Fix "This module"
  typo.
 2021-11-17 17:45:49 -08:00
Vagrant Cascadian
e782bb901b gnu: python-sgmllib3k: Fix typo. 
* gnu/packages/python-xyz.scm (python-sgmllib3k)[description]: Fix "This
  package" typo.
 2021-11-17 17:45:45 -08:00
Vagrant Cascadian
fb1cd494d7 gnu: rust-fever-api-0.2: Fix typo. 
* gnu/packages/crates-io.scm (rust-fever-api-0.2)[description]: Fix "This
  package" typo.
 2021-11-17 17:45:38 -08:00
Vagrant Cascadian
747403aca5 gnu: perl-test-nowarnings: Fix typo. 
* gnu/packages/perl-check.scm (perl-test-nowarnings)[description]: Fix "This
  module" typo.
 2021-11-17 17:45:21 -08:00
Tobias Geerinckx-Rice
407594d21b gnu: foo2zjs: Use archived home page. 
* gnu/packages/cups.scm (foo2zjs)[home-page]: Link to the Web Archive'd
URL.
 2021-11-18 01:12:21 +01:00
Tobias Geerinckx-Rice
90c524c94e gnu: sg3-utils: Omit static library. 
* gnu/packages/scsi.scm (sg3-utils)[arguments]: Add "--disable-static"
to #:configure-flags.
 2021-11-18 01:12:15 +01:00
Tobias Geerinckx-Rice
f41fbda9db gnu: sg3-utils: Update to 1.47. 
* gnu/packages/scsi.scm (sg3-utils): Update to 1.47.
 2021-11-18 01:08:30 +01:00
Marius Bakke
e3f70c947f gnu: ungoogled-chromium: Update to 96.0.4664.45-0. 
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M96.
(%chromium-version): Set to 96.0.4664.45.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
 2021-11-17 23:57:52 +01:00
Marius Bakke
b432cd1189 gnu: libtorrent-rasterbar: Update to 1.2.14. 
* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.2.14.
[source](uri): Adjust tag name.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Adjust accordingly.  Override the check phase to fake the time
for one test, and disable another.
[native-inputs]: Add LIBFAKETIME.
 2021-11-17 23:57:52 +01:00
Foo Chuan Wei
94fbcf7b78 gnu: Add rcs-blame. 
* gnu/packages/version-control.scm (rcs-blame): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-17 23:05:59 +01:00
Foo Chuan Wei
b737607c54 gnu: rcs: Install rcsfreeze. 
* gnu/packages/version-control.scm (rcs): Install rcsfreeze.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-17 23:05:58 +01:00
Philip McGrath
cb768f3860 gnu: tidy-html: Update to 5.8.0. 
* gnu/packages/web.scm (tidy-html): Update to 5.8.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-17 23:05:58 +01:00
Michael Rohleder
609066e996 gnu: xfce4-whiskermenu-plugin: Update to 2.6.1. 
* gnu/packages/xfce.scm (xfce4-whiskermenu-plugin): Update to 2.6.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-17 23:05:57 +01:00
Michael Rohleder
7fe5742e03 gnu: ristretto: Update to 0.12.0. 
* gnu/packages/xfce.scm (ristretto): Update to 0.12.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-17 23:05:57 +01:00
Michael Rohleder
538a755341 gnu: xfce4-cpugraph-plugin: Update to 1.2.5. 
* gnu/packages/xfce.scm (xfce4-cpugraph-plugin): Update to 1.2.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-17 23:05:57 +01:00
jgart
5a6af48408 gnu: shellcheck: Update to 0.8.0. 
* gnu/packages/haskell-apps.scm (shellcheck): Update to 0.8.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-17 23:05:57 +01:00
Xinglu Chen
77483d6b61 gnu: perl-inline-c: Patch paths to ‘make’. 
* gnu/packages/perl.scm (perl-inline-c)[arguments]<#:phases>{patch-paths}: New
  phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-17 23:05:57 +01:00
Vagrant Cascadian
6bffa13040 gnu: perl-log-message: Fix typo. 
* gnu/packages/perl.scm (perl-log-message)[description]: Correctly use "lets
  you".
 2021-11-17 13:29:35 -08:00
Nicolas Goaziou
ee98b30a69 gnu: emacs-eldev: Update to 0.10. 
* gnu/packages/emacs-xyz.scm (emacs-eldev): Update to 0.10.
[arguments]: Enable some tests, disable some others.  Remove #t at the end of phases.
 2021-11-17 22:12:26 +01:00
Ricardo Wurmus
30474f25d0 gnu: python-numcodecs: Unbundle c-blosc. 
* gnu/packages/python-xyz.scm (python-numcodecs)[source]: Add snippet to
remove bundled c-blosc sources and pre-built Cython files.
[arguments]: Add build phase 'disable-avx2 and 'unbundle; replace 'check phase
to run pytest; disable tests.
[inputs]: Add c-blosc, lz4, zlib, and zstd.
[native-inputs]: Add python-cython.
 2021-11-17 20:45:58 +00:00
Ricardo Wurmus
7850856591 gnu: c-blosc: Build with external libraries and without AVX2. 
* gnu/packages/compression.scm (c-blosc)[inputs]: Add lz4, snappy, zlib, and
zstd.
[arguments]: Disable building with AVX2 instructions; prefer our compression
packages over bundled sources.
 2021-11-17 20:45:54 +00:00