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Commit Graph

165487 Commits

Author SHA1 Message Date
Sharlatan Hellseher 6e8d2d28e9 gnu: python-jupyter-client: Move to jupyter.
* gnu/packages/python-xyz.scm (python-jupyter-client,
python-jupyter-client-bootstrap): Move from here ...
* gnu/packages/jupyter.scm: ... to here.

Change-Id: I036632e68c808877de14da7f91863be50cdafd61
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:33 +01:00
Sharlatan Hellseher 4a41327e07 gnu: python-jupyter-client: Simplfy bootstrapping.
* gnu/packages/python-xyz.scm (python-jupyter-client): Take over
definition of python-jupyter-client-bootsrap with adjustments.
[arguments] <phases>: Remove 'hide-zmq-deprecation-warnings, and
'set-tool-file-name, it uses Python's "subprocess.Popen" now; add
'fix-pytest-config, and 'pre-check'; use default 'check.
(python-jupyter-client-bootsrap): Inherit from python-jupyter-client

Change-Id: I2cf3aceb4d33995853cd36e79034a5867e51444e
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:32 +01:00
Sharlatan Hellseher 5136864a3f gnu: python-jupyter-core: Update to 5.9.1.
* gnu/packages/jupyter.scm (python-jupyter-core): Update to 5.9.1.
[arguments] <tests-flags>: Rework skipped tests.
[phases]{disable-migration}: Rewrite "touch" with Guile.
[native-inputs]: Remove python-pytest-timeout.

Change-Id: I1b272eafeac129af05fd1c92f4ec72bb73be17f9
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:31 +01:00
Sharlatan Hellseher adb2e90001 gnu: python-jupyter-core: Move to jupyter.
* gnu/packages/python-xyz.scm (python-jupyter-core): Move from here ...
* gnu/packages/jupyter.scm: ... to here.

Change-Id: Id577b47b0a6c9a8754e6dc4f07e5ac8ba4ea106d
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:30 +01:00
Sharlatan Hellseher c699eb12d9 gnu: Add python-ipython-minimal.
* gnu/packages/python-xyz.scm (python-ipython-minimal): New variable.

Change-Id: Ib68f3a7f2d45064aa83c7d034011ce4b43391ab6
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:29 +01:00
Sharlatan Hellseher 2bb291679b gnu: python-ipython: Update to 9.8.0.
* gnu/packages/python-xyz.scm (python-ipython): Update to 9.8.0.
[arguments] <test-backend, test-flags>: Move custom {check} options
here.
<phases>: Remove 'make-docs-reproducible, resolved upstream; add
'pre-check and use default 'check.
[inputs]: Remove readline and which.
[propagated-inputs]: Remove python-colorama and python-exceptiongroup;
add python-ipython-pygments-lexers.
[native-inputs]: Remove python-pickleshare, python-pytest-asyncio-0.21,
and python-wheel; add python-pytest-asyncio and python-trio.

Change-Id: I3f96109e70772cb07b6a24bb83058473f182e3ed
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:29 +01:00
Sharlatan Hellseher 659477ffe0 gnu: python-contourpy: Update to 1.3.3.
* gnu/packages/python-xyz.scm (python-contourpy): Update to 1.3.3.

Change-Id: Id764c632d375f6e68782adf5385f227eefaebefd
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:28 +01:00
Sharlatan Hellseher 6bdf5f3b66 gnu: python-pythran: Clean up artifacts.
* gnu/packages/python-science.scm (python-pythran): Adjust style and
remove unused parts.
[source] <url>: Use a direct URL string.
[arguments] <test-flags, phase:pre-check>: Drop them as not used.
[native-inputs]: Remove openblas, python-pytest, python-pytest-xdist,
and python-wheel.
[home-page]: Move above [synopsis].

Change-Id: I7708981548ce68351c00fbf4e8f8e806a18f798a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:27 +01:00
Sharlatan Hellseher ec3c031c3e gnu: python-pytest-doctestplus: Update to 1.6.0.
* gnu/packages/python-check.scm (python-pytest-doctestplus): Update to 1.6.0.
[phases] {patch-git-path}: Switch to search-input-file.
[propagated-inputs]: Remove python-setuptools; add python-packaging.
[native-inputs]: Remove python-pytest and python-wheel; add
python-pytest-bootstrap and python-setuptools.

Change-Id: Ie3fae7a1a639bf2b3a77dde3cdfd4696a929696e
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:26 +01:00
Sharlatan Hellseher 4dfb9dde2a gnu: python-pytest-randomly: Move to python-check.
* gnu/packages/check.scm (python-pytest-randomly): Move from here ...
* gnu/packages/python-check.scm: ... to here.

Change-Id: I6f121680e3cb08a88c45b82a9832286631f7ba2d
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:25 +01:00
Sharlatan Hellseher b34db23b8a gnu: python-pytest-randomly: Update to 4.0.1.
* gnu/packages/check.scm (python-pytest-randomly): Update to 4.0.1.
[arguments] <test-flags>: Rework skipped tests to reduce closure size.
[native-inputs]: Remove python-factory-boy, python-faker, python-numpy,
and python-pytest-xdist.

Change-Id: I1293bc007a1e4813f136758dd242b541fcb59c81
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:25 +01:00
Sharlatan Hellseher 9748ba26cd gnu: python-stcal: Adjust relax-requirments phase.
* gnu/packages/astronomy.scm (python-stcal):
[arguments] <phases>: Remove 'patch-slope-fitter; {relax-requirments}
remove relaxation for SciPy.
[native-inputs]: Remove python-wheel.

Change-Id: Ic886fe9f8d7a809f4f775f0db314b074124696ff
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:24 +01:00
Sharlatan Hellseher 6ee29be434 gnu: python-jmespath: Switch to pyproject.
* gnu/packages/python-xyz.scm (python-jmespath):
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Remove python-setuptools-67; add  python-setuptools.

Change-Id: I7c140b87eb9da476cfffc090663e5960b2c57de8
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:23 +01:00
Sharlatan Hellseher fbbec15aac gnu: python-specutils: Remove relax-requirements phase.
* gnu/packages/astronomy.scm (python-specutils)[arguments] <test-flags>:
Skip just one test.
<phases>: Remove 'relax-requirements.

Change-Id: Iad7352e3b69a2d71d125cf56f2d93d843778fb40
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:22 +01:00
Sharlatan Hellseher 1c4775c27c gnu: python-asap3: Update to 3.13.10.
* gnu/packages/python-science.scm (python-asap3): Update to 3.13.10.
[arguments] <tests?>: Enable.
[native-inputs]: Add python-pytest.

Change-Id: I166dfaf5f07f23d2d835d70f460cfa5f3f31ddb9
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:21 +01:00
Sharlatan Hellseher 9a1f731257 gnu: python-ase: Update to 3.26.0.
* gnu/packages/python-science.scm (python-ase): Update to 3.26.0.
[arguments] <test-flags>: Run tests in parallel up to 8 threads.
[native-inputs]: Remove python-wheel.

Change-Id: Ib2e5c9751f6c3358bb35084076f79586473da88f
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:21 +01:00
Sharlatan Hellseher 761c0a21a1 gnu: urh: Use python-numpy@1.
* gnu/packages/radio.scm (urh)[inputs]: Remove python-numpy; add
python-numpy-1.

Change-Id: I8951f2250aaaee78c924564843a38b9c983a6dee
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:20 +01:00
Sharlatan Hellseher 4a613db042 gnu: python-loompy: Update to 3.0.8.
* gnu/packages/bioinformatics.scm (python-loompy): Update to 3.0.8.
[native-inputs]: Remove python-wheel.

Change-Id: I7ca3d2a5d4e7005bd885197d9739df1c7b3e18f9
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:19 +01:00
Sharlatan Hellseher abe18178a7 gnu: python-hnswlib: Update to 0.8.0.
* gnu/packages/python-xyz.scm (python-hnswlib): Update to 0.8.0.

Change-Id: I494260ebd9230c729ca4dca0cc7ef5c2685bf19a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:18 +01:00
Sharlatan Hellseher 2f52a550ba gnu: python-romancal: Remove relax-requirements phase.
* gnu/packages/astronomy.scm (python-romancal)[arguments] <phases>:
Remove 'relax-requirements.

Change-Id: Ie86f5d9747ae0993ace9e619d39f91eea79fe399
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:17 +01:00
Sharlatan Hellseher b595d65965 gnu: python-regions: Update to 0.11.
* gnu/packages/astronomy.scm (python-regions): Update to 0.11.
[propagated-inputs]: Remove python-h5py and python-scipy.
[native-inputs]: Remove python-pytest-runner and python-wheel.

Change-Id: Ic502d297aecc3b0e3af3df92d05ca555fb6e8f97
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:16 +01:00
Sharlatan Hellseher 446e2a34f8 gnu: python-kalepy: Skip 5 tests.
* gnu/packages/statistics.scm (python-kalepy)[arguments] <test-flags>:
Skip NumPy incompatible tests.
[native-inputs]: Remove python-wheel.

Change-Id: Ic9f95969f4a0dc22fae5a48e28f971d573249062
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:16 +01:00
Sharlatan Hellseher 5cd724f523 gnu: python-sunkit-spex: Update to 0.4.0-0.bb544c4.
* gnu/packages/astronomy.scm (python-sunkit-spex): Update to
bb544c44573d6de44e3d5ba08d06cab0059a4db7 commit.
[arguments] <phases>: Remove 'pre-check; keep 'sanity-check.
[propagated-inputs]: Remove python-ndim, python-orthopy, and
python-quadpy; add python-gwcs, python-ndcube, and python-numpy.
[native-inputs]: Remove python-wheel.

Change-Id: Ib59e964b5bfa9804df3ed1b38181ad36dfa8ec25
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:15 +01:00
Sharlatan Hellseher 74b52b1ad8 gnu: python-numdifftools: Update to 0.9.42.
* gnu/packages/python-science.scm (python-numdifftools): Update to 0.9.42.
[arguments] <test-flags>: Keep only exclusion markers.
<phases>: Remove 'relax-requirements; add 'fix-pytest-config.
[propagated-inputs]: Add python-matplotlib.
[native-inputs]: Remove python-setuptools, python-setuptools-scm, and
python-wheel; add python-pdm-backend.

Change-Id: I87bdd34812df8771f53dd2ab8cfc4634ffb0b07d
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:14 +01:00
Sharlatan Hellseher 606e072449 gnu: python-meshio: Skip some tests.
* gnu/packages/simulation.scm (python-meshio)[arguments]<test-flags>:
Skip some NumPy incompatible failing tests.

Change-Id: I48e782b7eb2920c12777bda20a1f3d2753fcf657
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:13 +01:00
Sharlatan Hellseher c49f801deb gnu: python-lofar-h5plot: Use python-numpy@1.
* gnu/packages/astronomy.scm (python-lofar-h5plot):
[propagated-inputs]: Remove python-numpy; add python-numpy-1.
[native-inputs]: Remove python-wheel.

Change-Id: I1fef6da8cfbc24b85619b5d624d25feb371e7f91
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:12 +01:00
Sharlatan Hellseher 3e4caa25a3 gnu: python-losoto: Update to 2.6.0.
* gnu/packages/astronomy.scm (python-losoto): Update to 2.6.0.
[arguments] <tests?>: Disable for now.
<phases>: Add 'set-version, and 'relax-requirements.
[propagated-inputs]: Remove python-configparser; add
python-lofar-parameterset and python-progressbar2.
[native-inputs]: Remove python-cython and python-wheel; add
python-pytest and python-setuptools-scm.

Change-Id: I314f87b68e3b475c90a59adb94ce904408f90be3
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:12 +01:00
Sharlatan Hellseher 0e1c6cecad gnu: Add python-lofar-parameterset.
* gnu/packages/astronomy.scm (python-lofar-parameterset): New variable.

Change-Id: I37c14d916f99a6dc3063e0ad2b9ab15e3759a283
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:11 +01:00
Sharlatan Hellseher 5ef51a0820 gnu: python-glue-astronomy: Skip 3 tests.
* gnu/packages/astronomy.scm (python-glue-astronomy): Skip 3 tests.

Change-Id: I6d5099af4f6c396701ccdcef1439167f5ef9e23f
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:10 +01:00
Sharlatan Hellseher af005403dc gnu: python-seaborn: Skip 3 tests.
* gnu/packages/python-xyz.scm (python-seaborn)[arguments] <test-flags>:
Skip 3 tests.

Change-Id: I32ea08c88eadddf1afcbcab51f813ea5a79f8481
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:09 +01:00
Sharlatan Hellseher 814a335b47 gnu: veusz: Update to 4.2.
* gnu/packages/maths.scm (veusz): Update to 4.2.
[inputs]: Add python-numpy.
[propagated-inputs]: Remove python-numpy.
[native-inputs]: Remove python-astropy and python-wheel.

Change-Id: Id1258513cc7c7f0ebad71e523f23e37a59cc42ce
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:08 +01:00
Sharlatan Hellseher 95cb3d1bb5 gnu: websockify: Update to 0.13.0.
* gnu/packages/web.scm (websockify): Update to 0.13.0.
[inputs]: Remove python-simplejson.
[native-inputs]: Remove python-wheel.

Change-Id: Iad153e094a7863e58f75ef58ecb1f9e61a56a112
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:08 +01:00
Sharlatan Hellseher 3bdcc858e0 gnu: python-jwcrypto: Adjust inputs.
* gnu/packages/python-web.scm (python-jwcrypto)[propagated-inputs]:
Remove python-deprecated; add python-typing-extensions.

Change-Id: I0eda45ecdb99e98d7841482fb77c390014a53e2b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:07 +01:00
Sharlatan Hellseher 7533e089e7 gnu: python-modin: Update to 0.37.1.
* gnu/packages/python-science.scm (python-modin): Update to 0.37.1.
[arguments] <test-flags>: Rework options.
<phases>: Remove 'loosen-requirements; add 'versioneer, and
'fix-pytest-config; rework {check} phase to include some API tests
scenarios.
[propagated-inputs]: Remove python-cloudpickle and python-s3fs; add
python-fsspec, python-psutil, and python-typing-extensions.
[native-inputs]: Remove python-jinja2, python-lxml, python-matplotlib,
python-msgpack, python-openpyxl, python-psutil, python-pyarrow,
python-pytest-benchmark, python-pytest-cov, python-scipy,
python-sqlalchemy, python-tables, python-tqdm, python-xarray,
python-xlrd, and python-wheel; add python-s3fs, python-setuptools, and
python-versioneer.

Change-Id: I86feaa9f1cd110ed2c430e9816d34da165bccb74
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:06 +01:00
Sharlatan Hellseher 300bb5936a gnu: python-pyopengl: Skip one test.
* gnu/packages/python-graphics.scm (python-pyopengl)[arguments]
<test-flags>: Skip one more test.

Change-Id: I9ed0fb8093f3429fd7bb2f0ad5e2f26220300736
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:05 +01:00
Sharlatan Hellseher fa51fe801f gnu: python-cleanlab: Fix build.
* gnu/packages/machine-learning.scm (python-cleanlab)[arguments]
<test-flags>: Skip one more test.
<phases>: Add 'relax-requirements.
[native-inputs]: Remove python-wheel; add python-matplotlib.

Change-Id: I10e9d8a2eadc2de6d26f6247dc5e2305a215bd91
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:04 +01:00
Sharlatan Hellseher 2d930d5a70 gnu: python-arviz: Update to 0.22.0.
* gnu/packages/statistics.scm (python-arviz): Update to 0.22.0.
[arguments] <test-flags>: Run base tests only, deselect 10 tests.
<phases>: Remove 'remove-radon, and 'write-permission; add 'pre-check.
[propagated-inputs]: Remove python-dm-tree, python-setuptools, and
python-wheel.
[native-inputs]: Add python-setuptools.

Change-Id: If8ab6c9917cb19463ab07935709d9d2f10c2329a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:04 +01:00
Sharlatan Hellseher 602cf6ca46 gnu: python-arboreto: Update to 0.1.6-0.79f916b.
* gnu/packages/bioinformatics.scm (python-arboreto): Update to
79f916b0ea25c00989331b8db243826049c3d66c commit.
[arguments] <tests?, test-backend> Enable.
<phases>: Add 'disable-failing-tests.
[propagated-inputs]: Remove python-lz4, python-pyarrow, and
python-tornado-6.
[native-inputs]: Remove python-wheel.

Change-Id: If380a31f7a27832c0e0fd1dda80d5dfd3e539345
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:03 +01:00
Sharlatan Hellseher 8648556deb gnu: python-naima: Update to 0.10.3.
* gnu/packages/astronomy.scm (python-naima): Update to 0.10.3.
[native-inputs]: Remove python-setuptools, python-setuptools-scm, and
python-wheel; add python-hatch-vcs and python-hatchling.
[propagated-inputs]: Add python-numpy.

Change-Id: I91676156429f90237190f15cd1a7429ff31b4026
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:02 +01:00
Sharlatan Hellseher 2487914fbe gnu: python-xarray-einstats: Update to 0.9.1.
* gnu/packages/python-science.scm (python-xarray-einstats): Update to 0.9.1.
[propagated-inputs]: Add python-einops and python-numba.
[native-inputs]: Remove python-einops and python-numba.

Change-Id: Ic3e05114dc3d6343523aec222f527ef9653ed2d6
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:01 +01:00
Sharlatan Hellseher 3f241ee939 gnu: python-spectral-cube: Update to 0.6.7.
* gnu/packages/astronomy.scm (python-spectral-cube): Update to 0.6.7.
[arguments] <tests?, test-flags>: Enable, skip 5 tests.
[propagated-inputs]: Remove python-aplpy, python-distributed,
python-fsspec, python-matplotlib, python-pvextractor-bootstrap, and
python-reproject.
[native-inputs]: Remove python-wheel; add python-pytest,
python-pytest-astropy, python-pytest-xdist, and python-setuptools.

Change-Id: Ib34388a456f50d4296218c521e0a2af34a395362
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:00 +01:00
Sharlatan Hellseher bcf332f060 gnu: python-reproject: Update to 0.19.0.
* gnu/packages/astronomy.scm (python-reproject): Update to 0.19.0.
[arguments] <test-flags>: Read options from pyproject.toml, skip 3 shaky
tests.
[inputs]: Remove python-asdf, python-gwcs, python-pyvo, python-shapely, and
python-sunpy-minimal.
[propagated-inputs]: Remove python-cloudpickle; add python-dask-image,
python-pillow, and python-pyavm.
[native-inputs]: Add python-asdf, python-gwcs, python-pyvo,
python-shapely, and python-sunpy-minimal.

Change-Id: I50792fc53a1e9d661704da1fe080b01c29bf1fb5
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:19:00 +01:00
Sharlatan Hellseher 8dc07ea089 gnu: python-dask-image: Update to 2025.11.0.
* gnu/packages/python-science.scm (python-dask-image): Update to 2025.11.0.
[arguments] <test-flags>: All tests passed.
<phases>: Add 'fix-pytest-config; rework 'set-version to read from envar.
[propagated-inputs]: Remove python-tifffile-for-dask-image; add
python-tifffile.
[native-inputs]: Remove python-setuptools-scm; add
python-setuptools-scm-next.

* gnu/packages/python-xyz.scm (python-tifffile-for-dask-image): Delete variable.

Change-Id: I928c39c848f3a20d5eb51d10e4c8374891b8f0b0
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:18:59 +01:00
Sharlatan Hellseher 5e05d60785 gnu: python-xarray: Update to 2025.12.0.
* gnu/packages/python-science.scm (python-xarray): Update to 2025.12.0.
[arguments] <test-flags> Rework skipped tests, do not depend on MyPy
type checker.
[native-inputs]: Remove python-wheel; add python-pytest-asyncio.

Change-Id: I49e33b614926cde8bd5fad09ac278bc79e9d3cb1
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:18:58 +01:00
Sharlatan Hellseher 32160d32e4 gnu: catch2: Update to 2.13.10.
* gnu/packages/check.scm (catch2): Update to 2.13.10.

Change-Id: I77467d122e445d6df233adbbf32565caadb3446c
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:18:57 +01:00
Sharlatan Hellseher 42df9df17d gnu: python-numba: Update to 0.62.1.
* gnu/packages/python-xyz.scm (python-numba): Update to 0.62.1.
[arguments] <test-backend, tests-flags>: Rework the most of the skipped
tests as they passed a few times at least on AMD Ryzen 7 3800X CPU, skip
long running tests in the first place with "--exclude-tags" option.
<phases>: Add 'pre-check; use default 'check, set
'disable-proprietary-features after 'build phase.
[native-inputs]: Remove python-wheel.

Change-Id: I10e555f53b48d6404945faee373253bac4598e84
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:18:56 +01:00
Sharlatan Hellseher 24271778fa gnu: python-llvmlite: Update to 0.45.0.
* gnu/packages/llvm.scm (python-llvmlite): Update to 0.45.0.
[inputs]: Remove patches for llvm-15; add llvm-20.
[native-inputs]: Add cmake-minimal.

Change-Id: Icb1f55a64de6e580645e286dc6f7f10dfe985c01
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:18:55 +01:00
Sharlatan Hellseher fb67f784f4 gnu: pyscenic: Update to 0.12.1-2.06bafba4.
* gnu/packages/bioinformatics.scm (pyscenic): Update to
06bafba412792f6efa5a552a23bb221cc3bdea1b commit.
[native-inputs]: Remove python-wheel; add python-setuptools.

Change-Id: I42b8c3701484f617c14d67f3bfa2408b83e50d6e
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:18:55 +01:00
Sharlatan Hellseher 21dc181918 gnu: python-tables: Update to 3.10.2-0.aad9079.
* gnu/packages/python-xyz.scm (python-tables): Update to
aad9079c80ce3ae7f385d00af760d171dcc10535 commit.
[source]: Switch to git-fetch providing comparability with python-numexpr.
<snippet>: Delete "hdf5-blosc" git submodule.
[phases]{pre-build}: Substitute "hdf5-blosc" source path.
[inputs]: Add hdf5-blosc.

Change-Id: I7624af17709e150cea4f316cc4fd7f1786c3df1c
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:18:54 +01:00
Sharlatan Hellseher 02b4dc1b34 gnu: python-annoy: Add python-h5py.
* gnu/packages/python-xyz.scm (python-annoy)[arguments]<test-flags>:
Skip 3 tests requiring network access.
[native-inputs]: Add python-h5py.

Change-Id: I6cd3343d43b0f91ddf6c117844afa6ba1e662068
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25 21:18:53 +01:00