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7956 Commits

Author SHA1 Message Date
Ricardo Wurmus 3d55f9dc20 gnu: r-rgraphviz: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.52.0.
[native-inputs]: Add r-biocgenerics.

Change-Id: Ie1aacad6a6a5e3b1aa316f80627e8689a8ea24e7
 2025-05-12 08:55:01 +02:00
Ricardo Wurmus 4e4a880044 gnu: r-s4arrays: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.8.0.

Change-Id: Ib4e5958c5964a566591a0435547048cffac751d5
 2025-05-12 08:55:01 +02:00
Ricardo Wurmus b8bee156ca gnu: r-preprocesscore: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.70.0.

Change-Id: I43e98fa3c49e66dbba697a0a0d486e064c4a2216
 2025-05-12 08:55:00 +02:00
Ricardo Wurmus 885fdb03e4 gnu: r-icens: Update to 1.80.0. 
* gnu/packages/bioconductor.scm (r-icens): Update to 1.80.0.

Change-Id: Id12b6fb94ed4bb4ac40633632e8487fc20252101
 2025-05-12 08:55:00 +02:00
Ricardo Wurmus e617eb8b99 gnu: r-m3c: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-m3c): Update to 1.30.0.

Change-Id: I021fd0d45fdd92c0985b7fbda3399bb372ffba95
 2025-05-12 08:55:00 +02:00
Ricardo Wurmus 2109c7b1de gnu: r-rgreat: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.10.0.

Change-Id: I5eeeba9fa1ef48a53a0b603c2975c23aaee8b841
 2025-05-12 08:55:00 +02:00
Ricardo Wurmus c51ec45845 gnu: r-pcatools: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.20.0.

Change-Id: Ib1d8f2c39e5cb4741faa7df74fda4078e1c69af9
 2025-05-12 08:55:00 +02:00
Ricardo Wurmus caf2900fa0 gnu: r-biodist: Update to 1.80.0. 
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.80.0.

Change-Id: Ia154099d28be35a925bee0db59f6be5bba9c10ec
 2025-05-12 08:55:00 +02:00
Ricardo Wurmus 11dfc0aa73 gnu: r-biocworkflowtools: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.34.0.

Change-Id: Id532da05a54f416e1be4d785daa89309913d796b
 2025-05-12 08:55:00 +02:00
Ricardo Wurmus 5985f1c43c gnu: r-biocpkgtools: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.26.0.
[propagated-inputs]: Remove r-magrittr; add r-curl, r-glue, r-lubridate, r-purrr,
r-tidyr, and r-yaml.

Change-Id: I1880fecdeb7b4585a41361159a8e5ff68ccc9338
 2025-05-12 08:55:00 +02:00
Ricardo Wurmus a1f647461e gnu: r-biocor: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.32.0.
[native-inputs]: Add r-reactome-db and r-spelling.

Change-Id: Ibe390c1591f38516906927671ee59a4686654bcd
 2025-05-12 08:54:59 +02:00
Ricardo Wurmus 12271b535d gnu: r-grohmm: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-grohmm): Update to 1.42.0.

Change-Id: I6a3553a56d3dabd16a5d5ba526d9560586dc7c7b
 2025-05-12 08:54:59 +02:00
Ricardo Wurmus 50a9e3bac5 gnu: r-experimenthubdata: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-experimenthubdata): Update to 1.34.0.
[native-inputs]: Remove r-runit.

Change-Id: I88d4f4c06fab408ff612e230b19f4082fb492d19
 2025-05-12 08:54:59 +02:00
Ricardo Wurmus bc18690d65 gnu: r-experimenthub: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.16.0.

Change-Id: I969abc20ff0c188e342c5ac86926bf1a47efdb24
 2025-05-12 08:54:59 +02:00
Ricardo Wurmus 034778b564 gnu: r-biocviews: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.76.0.
[native-inputs]: Remove r-runit; add r-biocgenerics.

Change-Id: I63177855b4e85b7f3cf3feb877a53fe07a160617
 2025-05-12 08:54:59 +02:00
Ricardo Wurmus 09b5b697c6 gnu: r-biocgraph: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.70.0.

Change-Id: Ife5bbffb575154537542f8ca408633df11e154b9
 2025-05-12 08:54:59 +02:00
Ricardo Wurmus 814566bc4a gnu: r-bioccheck: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.44.0.

Change-Id: Ie1595b03d0215f141d11e1ce7a82f5507ed2c8cf
 2025-05-12 08:54:59 +02:00
Ricardo Wurmus e63a1ff2a3 gnu: r-biocbaseutils: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-biocbaseutils): Update to 1.10.0.
[native-inputs]: Add r-tinytest.

Change-Id: I4183e4220934600d60ca44a2b75afa2f57c7d70b
 2025-05-12 08:54:59 +02:00
Ricardo Wurmus 0772bd73d6 gnu: r-ebarrays: Update to 2.72.0. 
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.72.0.

Change-Id: I75f591145f7ca2279b9cbf65bd8689979e67ece0
 2025-05-12 08:54:59 +02:00
Ricardo Wurmus 9c12d59641 gnu: r-reactomepa: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.52.0.

Change-Id: I879fbc7026a16d62f1eec3259cb13f0bfe8fe2f6
 2025-05-12 08:54:59 +02:00
Ricardo Wurmus 148fb4f6ab gnu: r-graphite: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.54.0.
[native-inputs]: Add r-hgu133plus2-db.

Change-Id: Ia821b34aff46312797f8990d8caf914003ec7ea5
 2025-05-12 08:54:58 +02:00
Ricardo Wurmus 46c5a1aef5 gnu: r-biobroom: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.40.0.
[native-inputs]: Add r-magrittr.

Change-Id: I18611d5d8eabf600963ff2edcba41db18a12c0ad
 2025-05-12 08:54:58 +02:00
Ricardo Wurmus 5b06ac319d gnu: r-bioassayr: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.46.0.

Change-Id: I3e19937ed0b6690ec0327b1ca4c1eb61f9c79ac1
 2025-05-12 08:54:58 +02:00
Ricardo Wurmus 4864eb821b gnu: r-biggr: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.44.0.

Change-Id: I7d24aec93d42981d47e07740bf33dc3b79dbf386
 2025-05-12 08:54:58 +02:00
Ricardo Wurmus 3d068a7d2c gnu: r-hyperdraw: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.60.0.

Change-Id: I32e287829d697637fad7b874034bdeb2660bf2cd
 2025-05-12 08:54:58 +02:00
Ricardo Wurmus b835af3df8 gnu: r-hypergraph: Update to 1.80.0. 
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.80.0.
[native-inputs]: Add r-biocgenerics.

Change-Id: Ibc7ab070331f98815c1646e11645e62664aa3f89
 2025-05-12 08:54:58 +02:00
Ricardo Wurmus 9c3476b8f5 gnu: r-hybridmtest: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-hybridmtest): Update to 1.52.0.

Change-Id: Ib4f33bd1975d545d4e650ee6ee3ad8a53ae6b6c4
 2025-05-12 08:54:58 +02:00
Ricardo Wurmus ff70a3cf5b gnu: r-rsbml: Update to 2.66.0. 
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.66.0.

Change-Id: Iaba42ea1da893fa85b0890593ce0a91bde882f39
 2025-05-12 08:54:58 +02:00
Ricardo Wurmus 7aecc7ea50 gnu: r-bifet: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.28.0.

Change-Id: I34d63aad3224f11f280f0f9f7a07711647316392
 2025-05-12 08:54:58 +02:00
Ricardo Wurmus 75da85afbd gnu: r-bicare: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.66.0.

Change-Id: Ief12baa24c8a86ffc7511a207e1b21a994f8e8b1
 2025-05-12 08:54:57 +02:00
Ricardo Wurmus 1d7088b5fc gnu: r-acde: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-acde): Update to 1.38.0.

Change-Id: Idbdd538dae978b00300208c1133c603105818224
 2025-05-12 08:54:57 +02:00
Ricardo Wurmus 3995602fe3 gnu: r-acme: Update to 2.64.0. 
* gnu/packages/bioconductor.scm (r-acme): Update to 2.64.0.

Change-Id: I694a32b48589ab9bd2f932c597dc5f0d37e1d056
 2025-05-12 08:54:57 +02:00
Ricardo Wurmus 81917c9c67 gnu: r-acgh: Update to 1.86.0. 
* gnu/packages/bioconductor.scm (r-acgh): Update to 1.86.0.

Change-Id: Idbbf706acd69b71f485da68de634198408972285
 2025-05-12 08:54:57 +02:00
Ricardo Wurmus 1b5077ebeb gnu: r-ace: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-ace): Update to 1.26.0.

Change-Id: I73305a2fe08a5da6e6dede248618151ebf3dafc1
 2025-05-12 08:54:57 +02:00
Ricardo Wurmus 5dc8d8cc6e gnu: r-universalmotif: Update to 1.26.2. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.26.2.
[native-inputs]: Add r-spelling.

Change-Id: I6db50df3f47374820bb1446183099668de367b5f
 2025-05-12 08:54:57 +02:00
Ricardo Wurmus c6988dc5ad gnu: r-unifiedwmwqpcr: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.44.0.

Change-Id: Id85300207b2ebce0c4e08ae110589b9a098ebad8
 2025-05-12 08:54:57 +02:00
Ricardo Wurmus 2382d2c0e2 gnu: r-ucsc-utils: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-ucsc-utils): Update to 1.4.0.

Change-Id: Icc5d2702f56ac46a3a4cac8ec8e73614ac9592ef
 2025-05-12 08:54:57 +02:00
Ricardo Wurmus ac45b2c62a gnu: r-ucell: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-ucell): Update to 2.12.0.

Change-Id: Ice6c1bcaadcbc2c3e4036ea2d644b6458c9b9b31
 2025-05-12 08:54:57 +02:00
Ricardo Wurmus e4278128eb gnu: r-htqpcr: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.62.0.

Change-Id: I4106040311b214f9f71d2e59c3a5dc5809f2328f
 2025-05-12 08:54:56 +02:00
Ricardo Wurmus f1a85fcf6d gnu: r-variancepartition: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.38.0.

Change-Id: If627599421edf49c39d0aba60ae9140c853bd34d
 2025-05-12 08:54:56 +02:00
Ricardo Wurmus 3fec76219f gnu: r-variantfiltering: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.44.0.

Change-Id: Ibcc068eda4114887b97ef6fec8b9432d1b3d3b83
 2025-05-12 08:54:56 +02:00
Ricardo Wurmus c5f8840a17 gnu: r-tilingarray: Update to 1.86.0. 
* gnu/packages/bioconductor.scm (r-tilingarray): Update to 1.86.0.

Change-Id: I36f188822ba816f56540bf7bdb72e2a2eb420a79
 2025-05-12 08:54:56 +02:00
Ricardo Wurmus 0328efe9d8 gnu: r-wavcluster: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.42.0.

Change-Id: I537e9ac1d563202bdad889079f3eb0b52fc9292d
 2025-05-12 08:54:56 +02:00
Ricardo Wurmus 57014db330 gnu: r-gdsfmt: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.44.0.

Change-Id: Ib3eff728140fa1932faed3b8473bc31cc1a9777c
 2025-05-12 08:54:56 +02:00
Ricardo Wurmus dde8477c15 gnu: r-watermelon: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-watermelon): Update to 2.14.0.

Change-Id: I9b5dc0a6e43b6ae8f9f648fbae61a5dd216ff4d0
 2025-05-12 08:54:56 +02:00
Ricardo Wurmus c1f167dbc9 gnu: r-roc: Update to 1.84.0. 
* gnu/packages/bioconductor.scm (r-roc): Update to 1.84.0.

Change-Id: I67ef955106fb3015af3ef6385570b348a316f369
 2025-05-12 08:54:56 +02:00
Ricardo Wurmus 846a079ae8 gnu: r-circrnaprofiler: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.22.0.

Change-Id: I183f7450a6a6413eaf84c1785e43b19a633b623f
 2025-05-12 08:54:56 +02:00
Ricardo Wurmus db7ecf4c2e gnu: r-cicero: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.26.0.
[native-inputs]: Add r-vdiffr.

Change-Id: Iabb0374833d27bb79712e72c2465ca114d495b32
 2025-05-12 08:54:55 +02:00
Ricardo Wurmus 4bf5559814 gnu: r-chicago: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-chicago): Update to 1.36.0.

Change-Id: Ic04e65ff9934d111f4454b511ed182035b97b863
 2025-05-12 08:54:55 +02:00
Ricardo Wurmus 7f23620be7 gnu: r-rcistarget: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.28.0.
[properties]: Update updater-extra-native-inputs.

Change-Id: I6cd8bfca2a3112c29d688899c18448cea8619814
 2025-05-12 08:54:55 +02:00