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3278 Commits

Author SHA1 Message Date
Ricardo Wurmus
bc1fdb66d5 gnu: r-r-cache: Update to 0.17.0. 
* gnu/packages/statistics.scm (r-r-cache): Update to 0.17.0.

Change-Id: Iab4a74bda2949e140e01cc98aa1539ca4c043725
 2025-05-13 14:50:11 +02:00
Ricardo Wurmus
76002774a2 gnu: r-r-oo: Update to 1.27.1. 
* gnu/packages/statistics.scm (r-r-oo): Update to 1.27.1.

Change-Id: Icc063657cecc6302fc565daf88698cd01e62ad12
 2025-05-13 14:50:11 +02:00
Ricardo Wurmus
ccf028c417 gnu: r-rsqlite: Update to 2.3.11. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.11.

Change-Id: I45c85b23ccd0682a6f4159e673dea9d2edf63912
 2025-05-13 14:50:11 +02:00
Ricardo Wurmus
892d4cff73 gnu: r-rrcov: Update to 1.7-7. 
* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-7.

Change-Id: Ic4598deafb92da77351472440026919fb1e77333
 2025-05-12 08:55:13 +02:00
Ricardo Wurmus
e78f8c3e28 gnu: r-segmented: Update to 2.1-4. 
* gnu/packages/statistics.scm (r-segmented): Update to 2.1-4.

Change-Id: I63be449ed99a70ca7a7a037ec8aae9a0774a2d8d
 2025-05-12 08:55:13 +02:00
Ricardo Wurmus
1bbfcc430f gnu: r-rcurl: Update to 1.98-1.17. 
* gnu/packages/statistics.scm (r-rcurl): Update to 1.98-1.17.

Change-Id: I2545d21b772d959111a1ac8e89954a2ae874e16d
 2025-05-12 08:55:13 +02:00
Ricardo Wurmus
1256c23e29 gnu: r-rcpparmadillo: Update to 14.4.2-1. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 14.4.2-1.

Change-Id: Iee87f621fcc9417fd5f30f17b88a95744ac66570
 2025-05-12 08:55:13 +02:00
Ricardo Wurmus
3852e67c61 gnu: r-rlang: Update to 1.1.6. 
* gnu/packages/statistics.scm (r-rlang): Update to 1.1.6.

Change-Id: I4674ea5b582f5e924ed70b6b1c8eb175496eebad
 2025-05-12 08:55:13 +02:00
Ricardo Wurmus
80e8c65c0c gnu: r-r6: Update to 2.6.1. 
* gnu/packages/statistics.scm (r-r6): Update to 2.6.1.

Change-Id: I00743146c49f86cc226d2fb0122f3d9f87539288
 2025-05-12 08:55:13 +02:00
Ricardo Wurmus
a93967a272 gnu: r-tclust: Update to 2.1-0. 
* gnu/packages/statistics.scm (r-tclust): Update to 2.1-0.
[properties]: Record updater-extra-native-inputs.
[propagated-inputs]: Remove r-ellipsis; add r-rlang.

Change-Id: I887029c302ba9ec12852e1128a05e27ed00de525
 2025-05-12 08:55:12 +02:00
Nicolas Goaziou
1a8b36329f gnu: texlive-libkpathsea: Tweak "texmf.cnf" variables. 
* gnu/packages/tex.scm (texlive-libkpathsea): Use XDG variables instead of
HOME for cache and user configuration.  Re-instate TEXMFLOCAL, which may be
necessary for external TeX installations.
(texlive-luatex): Re-instate TEXFLOCAL.
* gnu/packages/algebra.scm (gap):
* gnu/packages/assembly.scm (asl):
(yaehmop):
* gnu/packages/bioinformatics.scm (discrover):
* gnu/packages/chez.scm (chez-scheme-for-racket):
* gnu/packages/engineering.scm (fastcap):
* gnu/packages/fsf.scm (book-faif):
* gnu/packages/maths.scm (hypre):
(stex-boostrap):
(suitesparse-amd):
(suitesparse-camd):
(suitesparse-cholmod):
(suitesparse-klu):
(suitesparse-ldl):
(suitesparse-mongoose):
(suitesparse-spex):
(suitesparse-spqr):
(suitesparse-umfpack):
* gnu/packages/ocaml.scm (ocaml-bibtex2html):
(unison):
* gnu/packages/python-xyz.scm (python-nbconvert):
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Set TEXMFVAR to
a writable location.

Change-Id: I3d2d069cf41a92214d9d6fb7f4d54fc81fe6db7a
 2025-05-06 11:25:07 +02:00
Nicolas Goaziou
4df6eda30f gnu: Rename texlive-updmap.cfg' into texlive-local-tree'. 
* doc/build.scm (pdf-manual):
* doc/contributing.texi (Submitting Patches):
* gnu/packages/algebra.scm (pari-gp):
(giac):
* gnu/packages/assembly.scm (asl):
* gnu/packages/audio.scm (chow-tape-model):
* gnu/packages/bioconductor.scm (r-biocstyle):
* gnu/packages/bioinformatics.scm (discrover):
(phyml):
(velvet):
* gnu/packages/chemistry.scm (yaehmop):
* gnu/packages/chez.scm (chez-scheme-for-racket):
(stex-bootstrap):
(chez-web):
(chez-sockets):
* gnu/packages/cran.scm (r-papaja):
(r-prereg):
* gnu/packages/docbook.scm (dblatex):
* gnu/packages/emacs-xyz.scm (emacs-auctex):
* gnu/packages/engineering.scm (fastcap):
* gnu/packages/finance.scm (optionmatrix):
* gnu/packages/fsf.scm (book-faif):
* gnu/packages/gettext.scm (po4a):
(po4a-minimal):
* gnu/packages/graphics.scm (mmg):
* gnu/packages/graphviz.scm (dot2tex):
* gnu/packages/guile-xyz.scm (emacsy):
(guile-cv):
* gnu/packages/lisp.scm (sbcl):
* gnu/packages/maths.scm (cddlib):
(gnuplot):
(itpp):
(octave):
(suitesparse-amd):
(suitesparse-camd):
(suitesparse-cholmod):
(suitesparse-klu):
(suitesparse-ldl):
(suitesparse-mongoose):
(suitesparse-spex):
(suitesparse-spqr):
(suitesparse-umfpack):
(hypre):
* gnu/packages/music.scm (lilypond):
* gnu/packages/ocaml.scm (unison):
(ocaml-bibtex2html):
* gnu/packages/pdf.scm (extractpdfmark):
* gnu/packages/photo.scm (enblend-enfuse):
* gnu/packages/plotutils.scm (asymptote):
* gnu/packages/python-xyz.scm (python-numpy-documentation):
(python-ipython-documentation):
(python-pypandoc):
* gnu/packages/radio.scm (gnuradio):
(libosmo-dsp):
* gnu/packages/scheme.scm (mit-scheme):
* gnu/packages/security-token.scm (yubico-piv-tool):
* gnu/packages/sphinx.scm (python-sphinx):
(python-sphinx-5):
* gnu/packages/statistics.scm (r-with-tests):
(r-spams):
* gnu/packages/tex.scm (texlive-local-tree): Renamed from…
(texlive-updmap.cfg): … this. Deprecate the latter.
(texlive-biblatex-philosophy):
(texlive-bropd):
(texlive-fontsize):
(texlive-poetrytex):
(texlive-reverxii):
(texlive-stix):
(texlive-suftesi):
(texlive-thucoursework):
(texlive-ulqda):
(texlive-yathesis):
(texlive-makecell):
(texlive-robotarm):
(texlive-bbold):
(texlive-babel-romansh):
(texlive-polyglossia):
(texlive-innerscript):
(teximpatient):
(texlive-xkeyval):
(texlive-arabxetex):
(texlive-blox):
(texlive-ecgdraw):
(texlive-gradientframe):
(texlive-everyhook):
(texlive-actuarialangle):
(texlive-actuarialsymbol):
(texlive-autopdf):
(texlive-etaremune):
(texlive-extract):
(texlive-forarray):
(texlive-graphicx-psmin):
(texlive-ha-prosper):
(texlive-namespc):
(texlive-newspaper):
(texlive-powerdot):
(texlive-recipecard):
(texlive-show2e):
(texlive-tablists):
(texlive-ted):
(texlive-xargs):
(texlive-xpeek):
* gnu/packages/xdisorg.scm (xforms):
* gnu/packages/algebra.scm (gap):
* gnu/packages/cpp.scm (jthread):
* guix/lint.scm (check-inputs-should-be-native): Rename `texlive-updmap.cfg' into `texlive-local-tree'.

Change-Id: I129280807c418e57acbcbda399545ab27a9e0a33
 2025-05-06 11:25:06 +02:00
Vinicius Monego
3b5215d062 gnu: Add python-resample. 
* gnu/packages/statistics.scm (python-resample): New variable.

Change-Id: I0bd8ed6c0532c5dba6efd9d15b056da401072fcf
 2025-05-04 08:16:27 -03:00
Sharlatan Hellseher
e4cd1b9d8f gnu: python-pgmpy: Skip more tests, run in parallel. 
* gnu/packages/statistics.scm (python-pgmpy) [arguments] <test-flags>:
Skip 4 more tests, run in up to 8 threads to improve performance,
supported upstream.
[native-inputs]: Add python-pytest-xdist.

Change-Id: I7071114299dc2dc4e52e79a36fcda0d12892653f
 2025-04-24 12:41:43 +01:00
Sharlatan Hellseher
c06043f032 gnu: xlispstat: Tabs to spaces. 
* gnu/packages/statistics.scm (xlispstat): Replace tabs with spaces and
fix indentation.

Change-Id: I1f46fa122ea100abee163aa4e629936876f828c4
 2025-04-24 12:41:43 +01:00
Sharlatan Hellseher
9fbfdff6e0 gnu: pspp: Tabs to spaces. 
* gnu/packages/statistics.scm (pspp): Replace tabs to spaces, fix
indentation.

Change-Id: If0f430cedeb8d346d6c42edf0dd1410163901596
 2025-04-24 12:41:43 +01:00
Sharlatan Hellseher
e417d6fe81 Merge remote-tracking branch 'origin/python-team' 
Change-Id: I08cf47c4ee8c4019615ba45cef4cca1bd362d31b
 2025-04-19 16:49:36 +01:00
Sharlatan Hellseher
5533ba9fdb gnu: python-pymc: Update to 5.21.0. 
* gnu/packages/statistics.scm (python-pymc): Update to 5.21.0.
[phases]{versioneer}: Simplify it.

Change-Id: Iaf9e87c917265c0d113c4c5c771522c5dfdcd5cd
 2025-04-16 11:46:30 +02:00
Nicolas Graves
c42f6d6a18 gnu: python-pgmpy: Update to 1.0.0. 
* gnu/packages/statistics.scm (python-pgmpy): Update to 1.0.0.
[arguments]{test-flags}: Ignore failing tests.
[native-inputs]: Add python-pyro-ppl, python-setuptools, python-wheel,
python-xgboost.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-04-16 11:46:28 +02:00
Ricardo Wurmus
445565521b gnu: python-patsy: Update to 1.0.1. 
* gnu/packages/statistics.scm (python-patsy): Update to 1.0.1.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check.
[propagated-inputs]: Remove python-six.
[native-inputs]: Add python-pytest-cov, python-setuptools, and python-wheel.

Change-Id: Ia732916c31e0494c00d455ac1cca5df913dd9c4d
 2025-04-16 11:46:11 +02:00
Ricardo Wurmus
2490649d0d gnu: r-minimal: Update to 4.5.0. 
* gnu/packages/statistics.scm (r-minimal): Update to 4.5.0.

Change-Id: I060123afa8c7e609ec923835ff6f400424de8f6d
 2025-04-16 11:01:23 +02:00
Ricardo Wurmus
3b81b7fb2f gnu: r-quantreg: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-quantreg): Move from here...
* gnu/packages/cran.scm (r-quantreg): ...to here.

Change-Id: Ibb09b586cb6d6400f81f8dacbe43932a744ee5f5
 2025-04-16 11:01:23 +02:00
Ricardo Wurmus
e75681881a gnu: r-quantpsyc: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-quantpsyc): Move from here...
* gnu/packages/cran.scm (r-quantpsyc): ...to here.
[synopsis]: Use lower case.
[description]: Complete the sentence.

Change-Id: Idd7c9ecad81cf0060e2190c63abaa837b376d99b
 2025-04-16 11:01:23 +02:00
Ricardo Wurmus
6035598909 gnu: r-purrr: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-purrr): Move from here...
* gnu/packages/cran.scm (r-purrr): ...to here.

Change-Id: If80c98ef94b5dc7e703565f33c463b55235aae40
 2025-04-16 11:01:23 +02:00
Ricardo Wurmus
9e03c4f2c8 gnu: r-puniform: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-puniform): Move from here...
* gnu/packages/cran.scm (r-puniform): ...to here.

Change-Id: Ia826341194689fc3e35f8005d9f81de47b8746cf
 2025-04-16 11:01:23 +02:00
Ricardo Wurmus
d0b35b8520 gnu: r-pryr: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-pryr): Move from here...
* gnu/packages/cran.scm (r-pryr): ...to here.

Change-Id: I1380132504647eec8c0059610afae17ca01a9378
 2025-04-16 11:01:22 +02:00
Ricardo Wurmus
fa7054325c gnu: r-praise: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-praise): Move from here...
* gnu/packages/cran.scm (r-praise): ...to here.

Change-Id: Ie7aa6d8e98b678d4487dd67997059e6cb908d96b
 2025-04-16 11:01:22 +02:00
Ricardo Wurmus
e128a0b73e gnu: r-prabclus: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-prabclus): Move from here...
* gnu/packages/cran.scm (r-prabclus): ...to here.

Change-Id: Ic49c215878e373d1fe8391ac15c53c274d0964a9
 2025-04-16 11:01:22 +02:00
Ricardo Wurmus
297fc9d437 gnu: r-plotrix: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-plotrix): Move from here...
* gnu/packages/cran.scm (r-plotrix): ...to here.

Change-Id: I674c4443ce03ec9e6fc0a5fb810a095340e136ad
 2025-04-16 11:01:22 +02:00
Ricardo Wurmus
764c48c58a gnu: r-plotly: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-plotly): Move from here...
* gnu/packages/cran.scm (r-plotly): ...to here.

Change-Id: I942879eb40c152d51a5d0d1bf07d5e887b560327
 2025-04-16 11:01:22 +02:00
Ricardo Wurmus
38b83fdd12 gnu: r-pkgmaker: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-pkgmaker): Move from here...
* gnu/packages/cran.scm (r-pkgmaker): ...to here.

Change-Id: I76f004f673bd3a20f76e57c2bb6d1e191c845b97
 2025-04-16 11:01:22 +02:00
Ricardo Wurmus
c8b06d9007 gnu: r-pkgconfig: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-pkgconfig): Move from here...
* gnu/packages/cran.scm (r-pkgconfig): ...to here.

Change-Id: I7bc801d886a1b6f60c8c59770385e8b09d49c312
 2025-04-16 11:01:22 +02:00
Ricardo Wurmus
05d0615070 gnu: r-pcapp: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-pcapp): Move from here...
* gnu/packages/cran.scm (r-pcapp): ...to here.

Change-Id: Ice2f24fb4fd070087ea52adc9e218f5ea5889cd3
 2025-04-16 11:01:22 +02:00
Ricardo Wurmus
fdc5491f25 gnu: r-pbkrtest: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-pbkrtest): Move from here...
* gnu/packages/cran.scm (r-pbkrtest): ...to here.

Change-Id: I4cd3810f9c815b385b896b8836276f3c2f128eff
 2025-04-16 11:01:21 +02:00
Ricardo Wurmus
ef485ddb81 gnu: r-pbapply: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-pbapply): Move from here...
* gnu/packages/cran.scm (r-pbapply): ...to here.

Change-Id: I7fdbf5e9693b7775ec476aa0e374779bd90859ad
 2025-04-16 11:01:21 +02:00
Ricardo Wurmus
ed18732cd9 gnu: r-numderiv: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-numderiv): Move from here...
* gnu/packages/cran.scm (r-numderiv): ...to here.

Change-Id: Ibfd5657c5b759c887cd1c338544b0b4034ab14d7
 2025-04-16 11:01:21 +02:00
Ricardo Wurmus
96c5d0b9b3 gnu: r-norm: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-norm): Move from here...
* gnu/packages/cran.scm (r-norm): ...to here.
[description]: Update from CRAN.
[license]: Correct to GPLv2+.

Change-Id: I7ac12f62894616d0e22ea7573da0dffa576b4696
 2025-04-16 11:01:21 +02:00
Ricardo Wurmus
e30851c465 gnu: r-nloptr: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-nloptr): Move from here...
* gnu/packages/cran.scm (r-nloptr): ...to here.

Change-Id: I6b6e82faccfbf5f58f6926034c23aadfe2f8f971
 2025-04-16 11:01:21 +02:00
Ricardo Wurmus
d509af04c1 gnu: r-naniar: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-naniar): Move from here...
* gnu/packages/cran.scm (r-naniar): ...to here.

Change-Id: I1509b43a4e05335796cbd589a769d82166409687
 2025-04-16 11:01:21 +02:00
Ricardo Wurmus
b399717adc gnu: r-mvtnorm: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-mvtnorm): Move from here...
* gnu/packages/cran.scm (r-mvtnorm): ...to here.

Change-Id: I57f6b08ad9d6f66a3233accd7521017424f21a96
 2025-04-16 11:01:21 +02:00
Ricardo Wurmus
91bb76fbf1 gnu: r-mumin: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-mumin): Move from here...
* gnu/packages/cran.scm (r-mumin): ...to here.

Change-Id: I9be39288510cd11acc0a84d5003932600c2fdaec
 2025-04-16 11:01:20 +02:00
Ricardo Wurmus
0c7020be16 gnu: r-multitaper: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-multitaper): Move from here...
* gnu/packages/cran.scm (r-multitaper): ...to here.

Change-Id: I18ce64d948f594ad298a8e59ac5a56f3bfcfc0d8
 2025-04-16 11:01:20 +02:00
Ricardo Wurmus
48d54c93f2 gnu: r-modeltools: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-modeltools): Move from here...
* gnu/packages/cran.scm (r-modeltools): ...to here.

Change-Id: Iac17098113d11baf645d07332e3415d4489fbc1c
 2025-04-16 11:01:20 +02:00
Ricardo Wurmus
2b2aaef46f gnu: r-modelmetrics: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-modelmetrics): Move from here...
* gnu/packages/cran.scm (r-modelmetrics): ...to here.

Change-Id: I9d5742cbac41884e760e33b499c8f0befa1b64e3
 2025-04-16 11:01:20 +02:00
Ricardo Wurmus
88176baf64 gnu: r-mnormt: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-mnormt): Move from here...
* gnu/packages/cran.scm (r-mnormt): ...to here.

Change-Id: Ia92c9bf5b5f4f3ba061187f330ce8d1366961ce0
 2025-04-16 11:01:20 +02:00
Ricardo Wurmus
47e8d6a551 gnu: r-mixtools: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-mixtools): Move from here...
* gnu/packages/cran.scm (r-mixtools): ...to here.

Change-Id: I97757ac2e72097ede8c04122917075afdc2ba96f
 2025-04-16 11:01:20 +02:00
Ricardo Wurmus
76d5c4cded gnu: r-minqa: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-minqa): Move from here...
* gnu/packages/cran.scm (r-minqa): ...to here.

Change-Id: Ia067ea5a6edbda3552753eda3802ba6f3fb5df8b
 2025-04-16 11:01:20 +02:00
Ricardo Wurmus
f0abe5d88b gnu: r-microbenchmark: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-microbenchmark): Move from here...
* gnu/packages/cran.scm (r-microbenchmark): ...to here.

Change-Id: Ibdeba2167214f20470206e32a821504c5e5226ba
 2025-04-16 11:01:20 +02:00
Ricardo Wurmus
34f1793f9d gnu: r-memoise: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-memoise): Move from here...
* gnu/packages/cran.scm (r-memoise): ...to here.

Change-Id: I9cd59d1aea04b1756da9b7ec5edd3a26b386eb8d
 2025-04-16 11:01:19 +02:00
Ricardo Wurmus
c922dc5f49 gnu: r-mclust: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-mclust): Move from here...
* gnu/packages/cran.scm (r-mclust): ...to here.

Change-Id: I130f21e23d4063a7eb8529ad9eaef4f040449445
 2025-04-16 11:01:19 +02:00