tribes/guix
1
0
Fork 1
mirror of https://git.savannah.gnu.org/git/guix.git synced 2026-04-20 01:00:30 +02:00
Code Activity
115,392 Commits 76 Branches 40 Tags
7a199bb74c263ee609ff5468db6501eb20820bde
Commit Graph

100541 Commits

Author SHA1 Message Date
Ricardo Wurmus
7a199bb74c gnu: methyldackel: Simplify arguments. 
* gnu/packages/bioinformatics.scm (methyldackel)[arguments]: Use list, drop
argument list.
[native-inputs]: Drop package label.
 2023-05-12 22:24:30 +02:00
Ricardo Wurmus
5d446e439d gnu: phast: Simplify by using G-expression. 
* gnu/packages/bioinformatics.scm (phast)[arguments]: Use G-expression and
drop trailing #T from build phases.
 2023-05-12 22:23:23 +02:00
Ricardo Wurmus
fac8721bfd gnu: ribotaper: Simplify with G-expression. 
* gnu/packages/bioinformatics.scm (ribotaper)[arguments]: Use G-expression and
drop trailing #T from build phase.
 2023-05-12 22:21:14 +02:00
Ricardo Wurmus
0e20ed322d gnu: sra-tools: Do link with libxml2. 
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use G-expression for
clarity; drop trailing #T from build phases; modify 'configure phase to
dynamically link with libxml2.
[inputs]: Drop package labels; add libxml2.
 2023-05-12 21:54:01 +02:00
Ricardo Wurmus
8ba3bf6564 gnu: ncbi-vdb: Ensure that vdb-sqlite is installed. 
The most important change here is the addition of the 'install-libs phase.
All other changes are just the result of switching to G-expressions.

* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Add 'install-libs
phase; use G-expression; drop trailing #T from build phases.
[inputs]: Drop package labels.
 2023-05-12 21:51:41 +02:00
Mădălin Ionel Patrașcu
263f235cd0 gnu: Add python-mgatk. 
* gnu/packages/bioinformatics.scm (python-mgatk): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2023-05-12 15:30:44 +02:00
宋文武
6419ca7fd7 gnu: Add Free as in Freedom (2.0). 
* gnu/packages/fsf.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2023-05-12 20:22:02 +08:00
Pierre Neidhardt
b363fab46f gnu: sbcl-serapeum: Update to 20230511. 
* gnu/packages/lisp-xyz.scm (sbcl-serapeum): Update to 20230511.
 2023-05-12 11:56:20 +02:00
Ricardo Wurmus
e3e011a081 gnu: python-lightning-cloud: Use older version of fastapi. 
The variant of the fastapi package must match that of
python-pytorch-lightning.

* gnu/packages/machine-learning.scm (python-lightning-cloud)
[propagated-inputs]: Replace python-fastapi with
python-fastapi-for-pytorch-lightning.
 2023-05-12 10:50:01 +02:00
Mădălin Ionel Patrașcu
a070eb7a15 gnu: Add python-optparse-pretty. 
* gnu/packages/python-xyz.scm (python-optparse-pretty): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2023-05-12 09:43:20 +02:00
Mădălin Ionel Patrașcu
9d05f9a9f5 gnu: Add r-dropletutils. 
* gnu/packages/bioconductor.scm (r-dropletutils): New variable.
 2023-05-12 09:36:26 +02:00
Mădălin Ionel Patrașcu
a5bae9c748 gnu: Add r-ggpattern. 
* gnu/packages/cran.scm (r-ggpattern): New variable.
 2023-05-12 09:17:07 +02:00
Mădălin Ionel Patrașcu
6c6e2b5fbc gnu: Add r-gridpattern. 
* gnu/packages/cran.scm (r-gridpattern): New variable.
 2023-05-12 09:17:07 +02:00
Greg Hogan
d07342b166 gnu: texlive-datetime2: Add needed propagated-inputs. 
Required packages can be seen with:
$ rg RequirePackage $(guix build texlive-datetime2)

* gnu/packages/tex.scm (texlive-datetime2)[propagated-inputs]: Add
TEXLIVE-ETOOLBOX, TEXLIVE-LATEX-XKEYVAL, and TEXLIVE-TRACKLANG.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-05-11 23:56:24 +02:00
Fabio Natali
277c24442c gnu: Add emacs-framemove. 
* gnu/packages/emacs-xyz.scm (emacs-framemove): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2023-05-11 23:55:43 +02:00
Simon Tournier
60cf9866cf gnu: texlive-ddphonism: Replace deprecated input. 
* gnu/packages/tex.scm (texlive-ddphonism)[propagated-inputs]: Replace
deprecated texlive-latex-tools by texlive-tools.

Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
 2023-05-11 22:33:28 +02:00
Simon Tournier
713f4e57f7 gnu: texlive-totpages: Replace deprecated input. 
* gnu/packages/tex.scm (texlive-totpages)[propagated-inputs]: Replace
deprecated texlive-latex-graphics by texlive-graphics.

Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
 2023-05-11 22:33:28 +02:00
Simon Tournier
012a514edb gnu: texlive-totcount: Replace deprecated input. 
* gnu/packages/tex.scm (texlive-totcount)[propagated-inputs]: Replace
deprecated texlive-latex-graphics by texlive-graphics.

Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
 2023-05-11 22:33:27 +02:00
Simon Tournier
43c0bf757a gnu: texlive-ncctools: Replace deprecated input. 
* gnu/packages/tex.scm (texlive-ncctools)[propagated-inputs]: Replace
deprecated texlive-latex-graphics by texlive-graphics.

Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
 2023-05-11 22:33:27 +02:00
Simon Tournier
b924254163 gnu: texlive-soulutf8: Replace deprecated inputs. 
* gnu/packages/tex.scm (texlive-soulutf8)[propagated-inputs]: Replace
deprecated texlive-generic-etexcmds by texlive-etexcmds and deprecated
texlive-generic-infwarerr by texlive-infwarerr.

Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
 2023-05-11 22:33:26 +02:00
Simon Tournier
345ec9f33a gnu: texlive-xetex: Replace deprecated inputs. 
* gnu/packages/tex.scm (texlive-xetex)[propagated-inputs]: Replace deprecated
texlive-generic-atbegshi by texlive-atbegshi and deprecated
texlive-latex-atveryend by texlive-atveryend.

Signed-off-by: Josselin Poiret <dev@jpoiret.xyz>
 2023-05-11 22:33:24 +02:00
Ricardo Wurmus
6a02462ba2 gnu: python-skranger: Install library. 
* gnu/packages/python-xyz.scm (python-skranger)[arguments]: Install the
library that we've just built.
 2023-05-11 20:55:54 +02:00
Ricardo Wurmus
642b73a029 gnu: Add python-skranger. 
* gnu/packages/python-xyz.scm (python-skranger): New variable.
 2023-05-11 20:41:16 +02:00
Ricardo Wurmus
ee4d9a74b2 Revert "gnu: Add python-pytest-enabler." 
This reverts commit 0a8c46e89f.

An older version of python-pytest-enabler already exists in (gnu packages
check).
 2023-05-11 20:41:16 +02:00
Efraim Flashner
f3a23fed20 gnu: lagrange: Update to 1.15.9. 
* gnu/packages/web-browsers.scm (lagrange): Update to 1.15.9.
 2023-05-11 21:33:05 +03:00
Efraim Flashner
b9a87d02e8 gnu: mutt: Update to 2.2.10. 
* gnu/packages/mail.scm (mutt): Update to 2.2.10.
 2023-05-11 21:33:05 +03:00
Efraim Flashner
ce6a1b29bd gnu: qiv: Update to 2.3.3. 
* gnu/packages/image-viewers.scm (qiv): Update to 2.3.3.
 2023-05-11 21:33:05 +03:00
Efraim Flashner
7120dc6e16 gnu: git-annex: Update to 10.20230407. 
* gnu/packages/haskell-apps.scm (git-annex): Update to 10.20230407.
 2023-05-11 21:33:05 +03:00
Efraim Flashner
96e013f964 gnu: global: Update to 6.6.10. 
* gnu/packages/code.scm (global): Update to 6.6.10.
 2023-05-11 21:33:02 +03:00
Ricardo Wurmus
23a575f97c gnu: Add python-omnipath. 
* gnu/packages/python-web.scm (python-omnipath): New variable.
 2023-05-11 17:12:54 +02:00
Ricardo Wurmus
6cac909c95 gnu: Add python-inflect. 
* gnu/packages/python-xyz.scm (python-inflect): New variable.
 2023-05-11 17:12:54 +02:00
Ricardo Wurmus
0616939641 gnu: Add python-docrep. 
* gnu/packages/python-xyz.scm (python-docrep): New variable.
 2023-05-11 17:12:54 +02:00
Ricardo Wurmus
0a8c46e89f gnu: Add python-pytest-enabler. 
* gnu/packages/python-check.scm (python-pytest-enabler): New variable.
 2023-05-11 17:12:54 +02:00
Ricardo Wurmus
5e07608a30 gnu: Add python-adjusttext. 
* gnu/packages/python-xyz.scm (python-adjusttext): New variable.
 2023-05-11 17:12:54 +02:00
Simon Tournier
b8e912c35f gnu: barrier: Include NULL compatibility. 
Fixes <https://bugs.gnu.org/63244>.
Reported by <john@fremlin.org>

* gnu/packages/barrier.scm (barrier)[arguments]: Use G-exp, add phases
including NULL macro.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-05-11 16:38:28 +02:00
Greg Hogan
92a7817fcb gnu: git: Update to 2.40.1 [security fixes]. 
Fixes CVE-2023-25652 and CVE-2023-29007.

* gnu/packages/version-control.scm (git): Update to 2.40.1.
(git-minimal)[arguments]: Rewrite to use gexps.  In
'remove-unusable-perl-commands' phase, make "git-add--interactive"
removal conditional.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2023-05-11 16:38:28 +02:00
Ivana Drazovic
b984ac16dc gnu: laby: Add patch for being able to execute game code. 
Reported upstream at https://github.com/sgimenez/laby/pull/68

* gnu/packages/patches/laby-use-tmpdir-from-runtime.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/games.scm (laby)[source]: Use it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-05-11 16:38:28 +02:00
Ivana Drazovic
8cb6fc32a6 gnu: laby: Make laby function in pure environments. 
* gnu/packages/games.scm (laby)
[build-system]: Switch to 'glib-or-gtk-build-system'.
[inputs]: Add 'gdk-pixbuf' and 'librsvg-for-system'.
[arguments]: Wrap to use SVG-enabled pixbuf loaders.cache.

Co-authored-by: Florian Pelz <pelzflorian@pelzflorian.de>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-05-11 16:38:28 +02:00
Ivana Drazovic
420b6a8555 gnu: laby: Use new package style. 
* gnu/packages/games.scm (laby)[arguments]: Use gexps.
Use "this-package-input" to locate package input.

Co-authored-by: Florian Pelz <pelzflorian@pelzflorian.de>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-05-11 16:38:28 +02:00
zamfofex
b718e42c96 gnu: Add oneDNN. 
* gnu/packages/machine-learning.scm (oneapi-dnnl): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-05-11 22:19:08 +08:00
zamfofex
af6ed2fc14 gnu: Add ISPC. 
* gnu/packages/c.scm (ispc): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-05-11 22:19:08 +08:00
Ricardo Wurmus
4557c83a7d gnu: python-distributed: Update to 2023.4.1. 
* gnu/packages/python-science.scm (python-distributed): Update to 2023.4.1.
[source]: Remove snippet.
[arguments]: Update build phase 'versioneer; restore 'sanity-check phase;
simplify custom 'check phase; add 'fix-pytest-config phase; use #:test-flags.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-importlib-metadata.
 2023-05-11 15:59:22 +02:00
Ricardo Wurmus
aa17958ca9 gnu: python-zict: Update to 3.0.0. 
* gnu/packages/python-xyz.scm (python-zict): Update to 3.0.0.
[build-system]: Use pyproject-build-system.
[arguments]: Ignore optional lmdb test.
[native-inputs]: Add python-pytest-asyncio, python-pytest-repeat, and
python-pytest-timeout.
 2023-05-11 15:59:22 +02:00
Ricardo Wurmus
ab91da5004 gnu: python-dask: Update to 2023.4.1. 
* gnu/packages/python-xyz.scm (python-dask): Update to 2023.4.1.
[source]: Remove snippet.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase; update 'versioneer phase; add
'fix-pytest-config and 'pre-check phases; set #:test-flags.
[native-inputs]: Add python-click and python-importlib-metadata.
 2023-05-11 15:59:22 +02:00
Ricardo Wurmus
e1c3adb27d gnu: python-fsspec: Update to 2023.5.0. 
* gnu/packages/python-xyz.scm (python-fsspec): Update to 2023.5.0.
[native-inputs]: Add python-pytest, python-pytest-mock, and python-numpy.
[propagated-inputs]: Add python-aiohttp, python-libarchive-c, python-requests,
and python-tqdm.
[arguments]: Add phase to embed the correct version string; disable tests that
need internet access.
[build-system]: Use pyproject-build-system.
[source]: Ftech sources with git to include tests.
 2023-05-11 15:59:22 +02:00
Ludovic Courtès
468b5d9548 gnu: guile-gnutls: Fix cross-compilation. 
The patch was inadvertently removed in
5e1e674421.

* gnu/packages/tls.scm (guile-gnutls)[source]: Re-add 'gnutls-cross.patch'.
 2023-05-11 13:21:45 +02:00
Zhu Zihao
4c7b5207cb gnu: supercollider: Update to 3.13.0. 
* gnu/packages/audio.scm (supercollider): Update to 3.13.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-05-11 18:46:04 +08:00
Zhu Zihao
3972d5f03c gnu: supercollider: Use G-expressions. 
* gnu/packages/audio.scm (supercollider)[source]: Use G-expression in snippet.
[arguments]: Use G-expressions.
<#:phases>: Replace `(assoc-ref outputs ...)` with `#$output`.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-05-11 18:29:57 +08:00
Lu Hui
c2cac2e985 gnu: ftxui: Update to 4.0.0. 
* gnu/packages/cpp.scm (ftxui): Update to 4.0.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2023-05-11 18:15:25 +08:00
kiasoc5
f2a5a32618 gnu: mpv-mpris: Update to 1.0. 
* gnu/packages/video.scm (mpv-mpris): Update to 1.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2023-05-11 12:27:03 +03:00