* gnu/packages/image-processing.scm (opencv)[arguments]: Disable
ReferenceAccuracy test due to floating-point precision differences
with ARM NEON.
Signed-off-by: Andreas Enge <andreas@enge.fr>
* gnu/packages/image-processing.scm (opencolorio): Disable a failing test
case on ARM and RISC-V.
Change-Id: If7ef40f72b0d42be47a3771a18e18c7c97b202ea
Signed-off-by: Andreas Enge <andreas@enge.fr>
Python bindings for libxml2 are now built as part of libxml2; remove all
python-libxml2 inputs for libxml2 (nearly all already had libxml2) and
deprecate the package. This was done manually using
git grep python-libxml2 gnu/packages
to find affected packages and then check all their input fields.
With the update to libxml2, we can remove all the libxml2-next* variants.
This change was automated with:
git grep -rl libxml2-next | xargs sed -i 's/\(libxml2-next\|libxml2-next-for-grafting\)/libxml2/g'
* gnu/packages/xml.scm (libxml2): Update to 2.14.6.
[arguments]<#:phases>: Add configure-python phase (from python-libxml2).
[native-inputs]: Add pkg-config and python-minimal.
(libxml2-next, libxml2-next/fixed, libxml2-next-for-grafting): Remove.
(python-libxml2): Deprecate in favor of libxml2.
Change-Id: I2976f2fde086e9bc345d661edbdc125abbb7a753
This reverts commit a7db92d9b3, this time with
the more careful command, to avoid a world rebuild:
grep -rl --exclude-dir=build --exclude-dir=patches --exclude=ld-wrapper.in \
--exclude=sitecustomize.py --exclude=guix-emacs.el maxim.cournoyer@gmail.com |
xargs sed -i 's/maxim.cournoyer@gmail.com/maxim@guixotic.coop/g'
Change-Id: I0871f5cf9ace79e34e78e24154d0da6ea95a3a91
The change was automated via:
git grep -l maxim.cournoyer@gmail.com |
xargs sed -i 's/maxim.cournoyer@gmail.com/maxim@guixotic.coop/g'
* .mailmap: New entry.
Change-Id: Iaa88b1e51c94159c49138fb43910badb990eb169
* gnu/packages/image-processing.scm (paraview): Update to 6.0.0.
[source]<snippet>: Update list of bundled VTK libraries in comments. glew is
no longer bundled so do not remove it.
[arguments]<#:configure-flags>: Use a relative directory in
"CMAKE_INSTALL_DOCDIR" and
"PARAVIEW_GENERATED_DOCUMENTATION_OUTPUT_DIRECTORY". Remove
"-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON".
[inputs]: Replace fmt with fmt-11. Remove glew.
* gnu/packages/simulation.scm (openfoam-org)[native-inputs]: Replace fmt with
fmt-11. Remove glew.
Change-Id: Ifa005f33dd04c0119008726c11f3b32efba28b0d
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu/packages/image-processing.scm (insight-toolkit)[arguments]
<#:configure-flags>: Set the Module_ITKReview CMake flag.
Change-Id: If3ab92b166d2fb78336a86846208773a23bc8eed
Signed-off-by: Andreas Enge <andreas@enge.fr>
In preparation to add SimpleITK, enable the remote modules
'SimpleITKFilters' and 'GenericLabelInterpolator' in the
insight-toolkit (ITK) build. The SimpleITKFilters module provides
additional filters used by SimpleITK and is required by its Python
extension module (<https://github.com/SimpleITK/SimpleITK/issues/2347>).
The GenericLabelInterpolator module is required for one of its
interpolation methods for resampling label images.
* gnu/packages/image-processing.scm (insight-toolkit)[arguments]
<#:configure-flags>: Add flags.
<#:phases>{prepare-remote-modules}: Include remote modules.
[native-inputs]: Add origins for them.
Change-Id: Ia70b33bb08d6f3e1ad81b42f2619cb6db69c69e8
Signed-off-by: Andreas Enge <andreas@enge.fr>
Insight Toolkit (ITK) Python module fails to import due to:
AttributeError: module 'numpy' has no attribute 'bool'
Implement the fix from here:
<https://github.com/InsightSoftwareConsortium/ITK/pull/5402>
While ITK's test suite is disabled for good reason, we can test that the
Python module imports successfully. Importing the Python module requires
NumPy. It is added as a native-input instead of a propagated-input because
the "out" output is unrelated to Python.
* gnu/packages/image-processing.scm (insight-toolkit)[arguments]: Remove
'#tests? #f'. Add #:imported-modules and #:modules.
<#:phases>: Delete 'check. Add 'fix-numpy-bool and 'python-sanity-check.
[native-inputs]: Add python-numpy.
(insight-toolkit-legacy)[arguments]: Remove inherited phase
'python-sanity-check.
[native-inputs]: Remove inherited python-numpy.
Change-Id: Ia6d14c22cbea9cd9877da36f8f72e2e34ff8a8a6
Signed-off-by: Andreas Enge <andreas@enge.fr>
* gnu/packages/image-processing.scm (opencv): Update to 4.12.0.
[source](snippet): Adjust to change of "3rdparty" directories changes.
Change-Id: I3314182f7c3d550794f29c24022c2cfa24e6b467
Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
The build was broken after an update to minizip-ng in commit
37b1aa7efa .
* gnu/packages/image-processing.scm (opencolorio)[inputs]:
Remove minizip-ng; add minizip-ng-4.0.9.
Change-Id: I7cf3f57e5a3685ffaa790c536e74129c016d56ff
This is a hidden variant of insight-toolkit needed for itk-snap.
* gnu/packages/image-processing.scm (insight-toolkit-legacy): New variable.
Change-Id: Ief18c1b4241241881b5b632121fc463db5b3c286
Signed-off-by: Andreas Enge <andreas@enge.fr>
* gnu/packages/image-processing.scm (opencolorio)[arguments]<#:phases>
{disable-test}: New phase disabling two tests (of which one failed).
Change-Id: Ia98c46c3c01ebe4a3fbab636e54e84eb29439e3a
ITK with Python wrapping fails to build with gcc@14: constexpr function's
return type '__castxml_Float32' (aka '__castxml_Float32_s') is not a literal
type
* gnu/packages/image-processing.scm (insight-toolkit)[native-inputs]: Add
gcc-13.
Change-Id: I9d7286a26840ede45a9543b4dbf195548cb59245
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
The patch 'hdf5-config-dependencies.patch' added 'find_dependency' calls for
libaec and zlib in hdf5-config.cmake. As a result, packages that use
find_package(HDF5) in CMake Config mode must have libaec and zlib in the build
environment. The patch appears to be unnecessary; it should be sufficient to
add libaec and zlib as inputs to packages that need them.
Related discussion in: <https://codeberg.org/guix/guix/pulls/953>.
* gnu/packages/maths.scm (hdf5): Do not propagate dependencies.
[source]<patches>: Remove hdf5-config-dependencies.patch.
* gnu/packages/image-processing.scm (insight-toolkit) [inputs]: Remove
libaec.
* gnu/packages/patches/hdf5-config-dependencies.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Deregister hdf5-config-dependencies.patch.
Change-Id: Idef61308cd146e898d1a4a8f1a97db23d36fc649
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Fixes: guix/guix#776
This new phase makes it possible to configure projects that use
insight-toolkit. I think this is what the configure flag '-DGTEST_ROOT=gtest'
was intended to do, but it does not. In addition, the configure flag
'-DITK_USE_SYSTEM_GOOGLETEST=ON' and native input googletest are no longer
required to placate the configure phase.
* gnu/packages/image-processing (insight-toolkit) [arguments]
<#:configure-flags>: Remove -DITK_USE_SYSTEM_GOOGLETEST=ON and
-DGTEST_ROOT=gtest.
<#:phases>: Add phase 'exclude-gtest-target.
[native-inputs]: Remove googletest.
Change-Id: I9c2e051ac9cfc3439ea53e1a4f3207fbb2f3337b
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
