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853af25ecd1d627bb21da44751d09da776cb4e7c
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37199 Commits

Author SHA1 Message Date
Julien Lepiller
853af25ecd gnu: ocaml-mtime: Update to 1.1.0. 
* gnu/packages/ocaml.scm (ocaml-mtime): Update to 1.1.0.
 2019-04-26 23:34:26 +02:00
Julien Lepiller
3f59ecfcb5 gnu: ocaml-qcheck: Update to 0.9. 
* gnu/packages/ocaml.scm (ocaml-qcheck): Update to 0.9.
 2019-04-26 23:34:10 +02:00
Ricardo Wurmus
152cbc3ca5 gnu: r-with-tests: Update to 3.6.0. 
* gnu/packages/statistics.scm (r-with-tests): Update to 3.6.0.
[arguments]: Adjust "build-reproducibly" phase.
[native-inputs]: Add a texlive-union consisting of texlive-fonts-amsfonts,
texlive-fonts-ec, texlive-latex-amsfonts, texlive-latex-base,
texlive-latex-fancyvrb, texlive-latex-graphics, texlive-latex-hyperref,
texlive-latex-oberdiek, texlive-latex-tools, texlive-latex-upquote, and
texlive-latex-url.
 2019-04-26 21:00:41 +02:00
Ricardo Wurmus
7f55904558 gnu: Add umi-tools. 
* gnu/packages/bioinformatics.scm (umi-tools): New variable.
 2019-04-26 21:00:37 +02:00
Timothy Sample
8caa458953 gnu: gdm: Install a placeholder desktop entry. 
This fixes <https://bugs.gnu.org/35068>.

* gnu/packages/gnome.scm (gdm)[arguments]: Add a phase that installs a
placeholder desktop entry file.

Co-authored-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-26 13:57:39 -04:00
Leo Famulari
8597aecb84 gnu: MPD: Update to 0.21.8. 
* gnu/packages/mpd.scm (mpd): Update to 0.21.8.
 2019-04-26 13:36:59 -04:00
Nicolas Goaziou
936a4f4371 gnu: mame: Update to 0.209. 
* gnu/packages/emulators.scm (mame): Update to 0.209.
 2019-04-26 18:54:16 +02:00
Julien Lepiller
e379d1b5ef gnu: dns: Fix configuration formating. 
* gnu/services/dns.scm (format-string-list): Fix formating of lists with
only one symbol.
 2019-04-26 18:37:48 +02:00
Julien Lepiller
273ba2552b gnu: ocaml-integers: Update to 0.3.0. 
* gnu/packages/ocaml.scm (ocaml-integers): Update to 0.3.0.
 2019-04-26 18:29:02 +02:00
Julien Lepiller
12c3f62ab2 gnu: ocaml-easy-format: Update to 1.3.1. 
* gnu/packages/ocaml.scm (ocaml-easy-format): Update to 1.3.1.
[build-system]: Use dune-build-system.
[source]: Use git-fetch.
 2019-04-26 18:28:58 +02:00
Julien Lepiller
7e49538483 gnu: ocaml-fpath: Update to 0.7.2. 
* gnu/packages/ocaml.scm (ocaml-fpath): Update to 0.7.2.
 2019-04-26 18:28:54 +02:00
Julien Lepiller
b858c5ac39 gnu: ocaml-ssl: Update to 0.5.7. 
* gnu/packages/ocaml.scm (ocaml-ssl): Update to 0.5.7.
 2019-04-26 18:28:49 +02:00
Julien Lepiller
44b8507d5e gnu: ocaml-octavius: Update to 1.2.1. 
* gnu/packages/ocaml.scm (ocaml-octavius): Update to 1.2.1.
 2019-04-26 18:28:46 +02:00
Julien Lepiller
22cd6a1d4f gnu: ocaml-result: Update to 1.3. 
* gnu/packages/ocaml.scm (ocaml-result): Update to 1.3.
[build-system]: Use dune-build-system.
[source]: Use git-fetch.
 2019-04-26 18:28:42 +02:00
Julien Lepiller
5cb40adaa2 gnu: ocaml-utop: Update to 2.3.0. 
* gnu/packages/ocaml.scm (ocaml-utop): Update to 2.3.0.
 2019-04-26 18:28:25 +02:00
Ludovic Courtès
d7b05620a9 vm-image: Remove NetworkManager & co. and add the DHCP client. 
* gnu/system/examples/vm-image.tmpl (services): Remove wpa-supplicant,
cups-pk-helper, and NetworkManager.  Add DHCP-CLIENT-SERVICE-TYPE.
 2019-04-26 18:24:55 +02:00
Ludovic Courtès
a9a0790376 gnu: xfdesktop: Stick a Guix logo in the background image. 
* gnu/packages/xfce.scm (xfdesktop)[source](modules, snippet): New
fields.
[arguments]: New field.
[native-inputs]: Add INKSCAPE and IMAGEMAGICK.
 2019-04-26 18:23:56 +02:00
Ludovic Courtès
94e1439800 services: cups-pk-helper: Export. 
* gnu/services/desktop.scm (cups-pk-helper-service-type): Export.
 2019-04-26 18:07:46 +02:00
Ludovic Courtès
1ac6c33cae vm-image: Use the actual file name of the current file. 
* gnu/system/examples/vm-image.tmpl (this-file): Use 'basename' and
'current-source-location'.
 2019-04-26 16:47:11 +02:00
Ludovic Courtès
98f035482f installer: Actually reboot when the user presses "Reboot." 
* gnu/installer/newt/final.scm (run-install-success-page): Return
'success.
* gnu/installer.scm (installer-program): Check the result of the 'final
step and reboot upon success.
 2019-04-26 14:19:36 +02:00
Ludovic Courtès
9529f7850e installer: Take 'guix system init' exit code into account. 
This allows the installer to distinguish success from failure, and also
ensures the shell that runs 'guix system init' exits upon completion.

* gnu/installer/utils.scm (run-shell-command)[pause]: New procedure.
Add "exec" before COMMAND in the script.  Guard 'invoke' call and handle
'invoke-error?'.  Add call to 'pause' on completion.
* gnu/installer/final.scm (install-system): Remove 'false-if-exception'.
 2019-04-26 14:19:36 +02:00
Ludovic Courtès
6c849cdb98 installer: Run wrapped program with 'execl', not 'system'. 
'system' invokes /bin/sh, which is certainly not needed here.

* gnu/installer.scm (installer-program): Use 'execl', not 'system'.
 2019-04-26 14:19:36 +02:00
Ludovic Courtès
538b99f31f system: Provide a new VM image configuration. 
* gnu/system/examples/vm-image.tmpl: Rewrite.
* doc/guix.texi (Running Guix in a VM): Adjust accordingly.
 2019-04-26 14:19:36 +02:00
Ludovic Courtès
504a0fc636 accounts: Always honor the configured user account shell. 
Starting from commit 0ae735bcc8, Guix
System would preserve the user shell across reconfigure and reboot.
This was done so as to allow for the use of 'chsh'.

This proved to be a misguided decision.  This commit goes back to
considering user shells as config and not "state."

* gnu/build/accounts.scm (allocate-passwd): Do not use shell from
PREVIOUS.
 2019-04-26 14:19:36 +02:00
Tobias Geerinckx-Rice
7342923d98 gnu: wgetpaste: Add and use wget input. 
This package has but one purpose; late binding's overkill.

* gnu/packages/wget.scm (wgetpaste)[arguments]: Add ‘use-inputs’ phase.
[inputs]: Add wget.
 2019-04-26 04:36:02 +02:00
Tobias Geerinckx-Rice
4f7db08571 gnu: hcxdumptool: Update to 5.1.4. 
* gnu/packages/networking.scm (hcxdumptool): Update to 5.1.4.
 2019-04-26 00:58:16 +02:00
Tobias Geerinckx-Rice
03c443ce8f gnu: hcxtools: Update to 5.1.4. 
* gnu/packages/networking.scm (hcxtools): Update to 5.1.4.
 2019-04-26 00:58:06 +02:00
Tobias Geerinckx-Rice
55036ddc9a gnu: soundtouch: Update to 2.1.1. 
* gnu/packages/audio.scm (soundtouch): Update to 2.1.1.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
Remove patches.
* gnu/packages/patches/soundtouch-CVE-2018-1000223.patch,
gnu/packages/patches/soundtouch-CVE-2018-14044-14045.patch:
Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2019-04-26 00:56:32 +02:00
Tobias Geerinckx-Rice
88507036f6 gnu: tmux-xpanes: Update to 4.1.0. 
* gnu/packages/tmux.scm (tmux-xpanes): Update to 4.1.0.
 2019-04-26 00:54:00 +02:00
Arun Isaac
9be92490b5 gnu: librepcb: Update to 0.1.1. 
* gnu/packages/engineering.scm (librepcb): Update to 0.1.1.
 2019-04-26 01:58:30 +05:30
Julien Lepiller
92eb600f8a gnu: knot-service: Add includes field in configuration. 
* gnu/services/dns.scm (knot-configuration): Add includes field.
(verify-knot-configuration): Check includes content.
(knot-config-file): Serialize includes.
* doc/guix.texi (DNS Services): Document it.
 2019-04-25 21:44:55 +02:00
Leo Famulari
ca3cf2d58e gnu: tmux: Update to 2.9. 
* gnu/packages/tmux.scm (tmux): Update to 2.9.
 2019-04-25 13:57:09 -04:00
Julien Lepiller
b68aff1f05 gnu: certbot: Add support for manual plugin. 
* gnu/services/certbot.scm (certificate-configuration): Add challenge,
auth-hook and cleanup-hook fields.
(certbot-command): Use them.
* doc/guix.texi (Certificate Services): Document them.
 2019-04-25 19:46:18 +02:00
Julien Lepiller
c3634df2a4 gnu: ocaml@4.02: Remove the package, affected by a CVE, and its dependent 
packages.

This fixes <https://bugs.gnu.org/27462>.

* gnu/packages/ocaml.scm (ocaml-4.02, camlp4-4.02, ocaml4.02-menhir)
(ocaml4.02-lablgtk, ocaml4.02-findlib, ocaml4.02-ounit)
(ocaml4.02-camlzip, ocaml4.02-ocamlmod, ocaml4.02-zarith)
(ocaml4.02-qcheck, ocaml4.02-qtest, ocaml4.02-stringext)
(ocaml4.02-bisect, ocaml4.02-bitstring, ocaml4.02-result)
(ocaml4.02-topkg, ocaml4.02-rresult, ocaml4.02-sqlite3, ocaml4.02-csv)
(ocaml4.02-mtime, ocaml4.02-cmdliner, ocaml4.02-fmt, ocaml4.02-astring)
(ocaml4.02-alcotest, ocaml4.02-ppx-tools, ocaml4.02-react, ocaml4.02-ssl)
(ocaml4.02-lwt, ocaml4.02-lwt-log, ocaml4.02-logs, ocaml4.02-fpath)
(ocaml4.02-bos, ocaml4.02-xmlm, ocaml4.02-ulex, ocaml4.02-uchar)
(ocaml4.02-uutf, ocaml4.02-jsonm, ocaml4.02-ocurl, ocaml4.02-base64)
(ocaml4.02-omake, ocaml4.02-batteries, ocaml4.02-pcre, ocaml4.02-oasis)
(ocaml4.02-js-build-tools, ocaml4.02-bin-prot, ocaml4.02-fieldslib)
(ocaml4.02-ppx-core, ocaml4.02-ppx-optcomp, ocaml4.02-ppx-driver)
(ocaml4.02-cppo, ocaml4.02-ppx-deriving, ocaml4.02-ppx-type-conv)
(ocaml4.02-ppx-inline-test, ocaml4.02-ppx-bench, ocaml4.02-ppx-compare)
(ocaml4.02-sexplib, ocaml4.02-typerep, ocaml4.02-variantslib)
(ocaml4.02-ppx-sexp-conv, ocaml4.02-ppx-variants-conv)
(ocaml4.02-ppx-here, ocaml4.02-ppx-assert, ocaml4.02-ppx-enumerate)
(ocaml4.02-ppx-let, ocaml4.02-ppx-typerep-conv, ocaml4.02-ppx-sexp-value)
(ocaml4.02-ppx-pipebang, ocaml4.02-ppx-bin-prot, ocaml4.02-ppx-fail)
(ocaml4.02-ppx-custom-printf, ocaml4.02-ppx-sexp-message)
(ocaml4.02-ppx-fields-conv, ocaml4.02-seq, ocaml4.02-re)
(ocaml4.02-ppx-expect, ocaml4.02-ppx-jane, ocaml4.02-core-kernel)
(ocaml4.02-async-kernel, ocaml4.02-async-rpc-kernel, ocaml4.02-core)
(ocaml4.02-async-unix, ocaml4.02-async-extra, ocaml4.02-async)
(ocaml4.02-ocplib-endian, ocaml4.02-easy-format, optcomp)
(ocaml4.02-piqilib, ocaml4.02-uuidm, ocaml4.02-graph, ocaml4.02-piqi)
(ocaml4.02-camomile, ocaml4.02-zed, ocaml4.02-lambda-term): Remove variables.
* guix/build-system/ocaml.scm (default-ocaml4.02)
(default-ocaml4.02-findlib, package-with-ocaml4.02)
(strip-ocaml4.02-variant): Remove variables.
 2019-04-25 19:01:31 +02:00
Julien Lepiller
6e49426761 gnu: ocamlify: Downgrade to 0.0.1. 
Version 0.0.2 cannot be built with the latest OCaml, whereas this
version does.  This is also the version used by opam.

* gnu/packages/ocaml.scm (ocamlify): Downgrade to 0.0.1.
[arguments]: Do not use ocaml-4.02.
 2019-04-25 19:01:05 +02:00
Julien Lepiller
0705f389d1 gnu: Remove ocaml-jbuilder. 
Jbuilder is deprecated and replaced by dune.

* gnu/packages/ocaml.scm (ocaml-jbuilder): Remove variable.
(ocaml-zed, ocaml-utop): Use dune-build-system.
 2019-04-25 19:00:48 +02:00
Julien Lepiller
bbe9915b30 gnu: bap: Update to 1.6.0. 
* gnu/packages/ocaml.scm (bap): Update to 1.6.0.
(ocaml-frontc): Update to 3.4.1.
(ocaml-fileutils, ocaml-cstruct, ocaml-hex, ocaml-ezjsonm, ocaml-uri):
New variables.
(ocaml4.02-fileutils, ocaml4.02-cstruct, ocaml4.02-hex,
ocaml4.02-ezjsonm, ocaml4.02-uri): Remove variables.
 2019-04-25 19:00:25 +02:00
Julien Lepiller
ce9a30e6f4 gnu: Add ocaml-bigarray-compat. 
* gnu/packages/ocaml.scm (ocaml-bigarray-compat): New variable.
 2019-04-25 18:59:55 +02:00
Nicolas Goaziou
92e1e0ec4b gnu: fltk: Update to 1.3.5. 
* gnu/packages/fltk.scm (fltk): Update to 1.3.5.
 2019-04-25 14:59:16 +02:00
Ludovic Courtès
187122b902 installer: Ask for confirmation of the user passwords. 
* gnu/installer/newt/user.scm (run-user-add-page): Add #:name and
 #:home-directory and honor them.  Add call to 'confirm-password'.
 2019-04-25 12:23:54 +02:00
Ludovic Courtès
8f2b7e3cb4 installer: Ask for confirmation of the root password. 
* gnu/installer/newt/user.scm (confirm-password): New procedure.
(run-root-password-page): Add call to 'confirm-password'.
 2019-04-25 12:23:54 +02:00
Ludovic Courtès
453c976501 installer: Use FLAG-PASSWORD for the encryption passphrase confirmation. 
* gnu/installer/newt/partition.scm (prompt-luks-passwords)
<password-confirm-page>: Pass #:input-flags to 'run-input-page'.
 2019-04-25 12:23:54 +02:00
Chris Marusich
4728806185 gnu: Add python-yubikey-manager and python2-yubikey-manager. 
* gnu/packages/security-token.scm (python-yubikey-manager)
(python2-yubikey-manager): New variables.
 2019-04-24 21:08:39 -07:00
Chris Marusich
5297e97599 gnu: Add python-fido2 and python2-fido2. 
* gnu/packages/security-token.scm (python-fido2, python2-fido2): New
variables.
 2019-04-24 21:08:39 -07:00
Chris Marusich
41553c90e4 gnu: Add public-suffix-list. 
* gnu/packages/dns.scm (public-suffix-list): New variable.
 2019-04-24 21:08:39 -07:00
Chris Marusich
5f7d151c77 gnu: Add libu2f-host. 
* gnu/packages/security-token.scm (libu2f-host): New variable.
 2019-04-24 21:08:39 -07:00
Chris Marusich
404037f83d gnu: Add python-pyscard and python2-pyscard. 
* gnu/packages/security-token.scm (python-pyscard, python2-pyscard): New
variables.
 2019-04-24 21:08:38 -07:00
Chris Marusich
968e86bd93 gnu: Add python-pyfakefs and python2-pyfakefs. 
* gnu/packages/patches/python-pyfakefs-remove-bad-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add the patch.
* gnu/packages/check.scm (python-pyfakefs, python2-pyfakefs): New
  variables.
 2019-04-24 21:08:36 -07:00
Tobias Geerinckx-Rice
0406434baa gnu: bind: Update to 9.12.4-P1 [fixes CVE-2018-5743, CVE-2019-6467]. 
* gnu/packages/dns.scm (isc-bind): Update to 9.12.4-P1.
[source]: Add patch.
[inputs]: Add python and python-ply.
* packages/patches/bind-fix-unused-pk11-ecc-constants.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-04-25 04:42:17 +02:00
Tobias Geerinckx-Rice
9b19734c50 gnu: r-yamss: Fix typo in description. 
* gnu/packages/bioconductor.scm (r-yamss)[description]: Fix typo.
 2019-04-25 04:42:16 +02:00