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86acfa0b94321c09cbc207a77d98e23b9abdb6bc
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167646 Commits

Author SHA1 Message Date
Andreas Enge
86acfa0b94 gnu: Remove qsyncthingtray. 
* gnu/packages/syncthing.scm (qsyncthingtray): Delete variable.

Change-Id: I67b5f674bd04624d18aaa842c811282cabc1f462
 2026-02-07 14:16:22 +01:00
Olivier Dion
83b255409e gnu: liburcu: Update to 0.15.6. 
* gnu/packages/datastructures.scm (liburcu): Update to 0.15.6.

Change-Id: Ie8e6307137d80ec29925c57ba70070b8a39d3822
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2026-02-07 14:08:52 +01:00
Sharlatan Hellseher
f1f049817b gnu: thefuck: Use python-pytest-8. 
* gnu/packages/admin.scm (thefuck):[native-inputs]: Remove
python-pytest; add python-pytest-8.

Change-Id: I532c1973c289501219c5f40ebda2f2c9d27fc20c
 2026-02-07 12:28:59 +01:00
Sharlatan Hellseher
d83410ba4c gnu: Remove scons-python2. 
* gnu/packages/build-tools.scm (scons-python2): Delete variable.

Change-Id: Ie58a8d433de6196547ffc69a6d0d602789d1fb65
 2026-02-07 12:28:59 +01:00
Sharlatan Hellseher
0c6eb59fa2 gnu: redeal: Disable missing tests. 
* gnu/packages/games.scm (redeal):[arguments] <test-flags>: No tests
provided.

Change-Id: I564f131a34e01bef441be01f20ff87d00892141f
 2026-02-07 12:28:59 +01:00
Sharlatan Hellseher
b2ffb0bfe5 gnu: scvelo: Relocate phase 'set-numba-cache-dir. 
* gnu/packages/bioinformatics.scm (scvelo): [arguments]<#:phases>:
Relocate phase 'set-home.

Relates-to: guix/guix#5892
Change-Id: Ia51609df06d64d41b7a272d0e17e96cf973df2f8
 2026-02-07 12:28:59 +01:00
Sharlatan Hellseher
bc70d27edc gnu: python-ikarus: Update to 0.0.3. 
* gnu/packages/bioinformatics.scm (python-ikarus): Update to 0.0.3. Use
G-Expressions.
[arguments] <test-backend, test-flags>: Use custom.
<phases>: Remove 'fix-issue-12; reallocate 'set-numba-cache-dir.
[native-inputs]: Remove python-wheel.

Change-Id: I4bf1b5bbda56373fd632f31aca59d473ab37252a
 2026-02-07 12:28:59 +01:00
Sharlatan Hellseher
189b7542de gnu: python-lenstronomy: Skip one test. 
* gnu/packages/astronomy.scm (python-lenstronomy)[arguments]
<test-flags>: Skip one more test.

Change-Id: I8c17b7750edde002bd4340eb2475ab3d8c795370
 2026-02-07 12:28:58 +01:00
Sharlatan Hellseher
9a26c21a54 gnu: python-django-rq: Update to 3.2.2. 
* gnu/packages/django.scm (python-django-rq): Update to 3.2.2.
[source]: Switch to git-fetch.
[arguments] <test-flags>: Drop all.
<phases>: Remove 'pre-check; add 'start-redis.
[native-inputs]: Remove python-setuptools and python-wheel; add
python-hatchling.

Change-Id: I438d07f2bfda42e9dff9f4c1269106c6be68e766
 2026-02-07 12:28:58 +01:00
Sharlatan Hellseher
66ec92b2c3 gnu: python-rq-scheduler: Improve package, fix tests. 
* gnu/packages/databases.scm (python-rq-scheduler): Reallocate some
fields, fix the style and readability.
[source] <url>: Use exact git URL instead of [home-page].
[arguments] <test-flags>: Skip tests requiring root access.
[propagated-inputs]: Remove python-croniter; add python-crontab,
python-freezegun, and python-dateutil.
[native-inputs]: Remove python-crontab, python-freezegun, and python-wheel.
[home-page]: Move above [synopsis].

Change-Id: If82959e5cb028b826a5a53293b3c58aefb507f36
 2026-02-07 12:28:58 +01:00
Sharlatan Hellseher
7d6c683bc4 gnu: python-crontab: Update to 3.3.0. 
* gnu/packages/python-xyz.scm (python-crontab): Update to 3.3.0.
[source] <pypi-uri>: Fix the name.
[native-inputs]: Remove python-wheel.

Change-Id: Ic5ea74269d289ec1d9e6a9132a25bc57a907406c
 2026-02-07 12:28:58 +01:00
Sharlatan Hellseher
c6614e132f gnu: python-rq: Update to 2.6.1. 
* gnu/packages/databases.scm (python-rq): Update to 2.6.1.
[propagated-inputs]: Add python-croniter.

Change-Id: Iab464919a5a336ef8e7377a6ee99d0a867f320f4
 2026-02-07 12:28:58 +01:00
Sharlatan Hellseher
eb42987949 gnu: python-celltypist: Update to 1.7.1. 
* gnu/packages/bioinformatics.scm (python-celltypist): Update to 1.7.1.
[arguments] <tests?>: Enable simple runtime regression check.
<phases>: Remove 'set-home and 'set-numba-cache-dir; add
'set-environment; use custom 'check phase.
[native-inputs]: Remove python-wheel; add python-setuptools.

Change-Id: I7ec16da8c6d3af8ad0d8eb96d5f9b50d9858eae3
 2026-02-07 12:28:58 +01:00
Sharlatan Hellseher
e012430a92 gnu: python-argostranslate: Fix build. 
* gnu/packages/machine-learning.scm (python-argostranslate)
  [phases]{writable-home}: Remove phase.
  {set-home-env}: New phase, located before {build}.

Relates-to: guix/guix#5892
Change-Id: I04fdb2fa6793d3e3e1da906612f4b650238f2b1d
 2026-02-07 12:28:58 +01:00
Nicolas Graves
56a1951da0 gnu: python-scitools-iris: Update to 3.14.1. 
* gnu/packages/geo.scm (python-scitools-iris): Update to 3.14.1.
[arguments]<#:test-flags>: Refresh them.
<#:phases>: Remove phase 'relax-requirements.  Refresh phase
'fix-paths.  Replace phase 'pre-check addition by the phase 'check
replacement.
[native-inputs]: Add python-affine, python-rasterio,
python-scitools-mo-pack.

Change-Id: Ie2fef55d61266758106c3797217da72927279c90
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:58 +01:00
Nicolas Graves
78af90c974 gnu: Add iris-test-data. 
* gnu/packages/geo.scm (iris-test-data): New variable.

Change-Id: Ib9a0b1d09a06d9372272fd7d0c7862533d7b4b84
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:58 +01:00
Nicolas Graves
215cdb12d0 gnu: Add python-scitools-mo-pack. 
* gnu/packages/geo.scm (python-scitools-mo-pack): New variable.

Change-Id: I3a03acd4fbbccc69a72373c7e34e6d23f7fd9426
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:58 +01:00
Nicolas Graves
79cffdc00f gnu: Add libmo-unpack. 
* gnu/packages/geo.scm (libmo-unpack): New variable.

Change-Id: I7f157a0949e4022b7ad20635119e906ab005fb0f
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:58 +01:00
Nicolas Graves
9999f19742 gnu: python-scikit-surprise: Relocate phase 'set-home. 
* gnu/packages/python-science.scm (python-scikit-surprise)[arguments]
<#:phases>: Relocate phase 'set-home.

Change-Id: Id6e5993e167f1f61865fcfe31caba0bce2d5263a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:57 +01:00
Nicolas Graves
0f6bd9d642 gnu: python-robotframework-datadriver: Add python-xlrd native-input. 
* gnu/packages/python-xyz.scm (python-robotframework-datadriver)
[native-inputs]: Remove python-wheel.  Add python-xlrd.

Change-Id: I38db8263ffad28042306b24e00034be941a236ba
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:57 +01:00
Nicolas Graves
9c1378062d gnu: python-ratelimiter: Switch to pytest-8. 
* gnu/packages/python-xyz.scm (python-ratelimiter)[native-inputs]:
Replace python-pytest by python-pytest-8.

Change-Id: Ie10f3fbcd4cea932be317eb21624bcac8ca6fa10
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:57 +01:00
Nicolas Graves
d568e0d1a7 gnu: python-ndcube: Relocate phase 'set-home-env. 
* gnu/packages/wxwidgets.scm (python-ndcube)[arguments]<#:phases>:
Relocate phase 'set-home-env.

Change-Id: I77bd29800f0c24cdbbff88251093e8c107eae6d4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:57 +01:00
Nicolas Graves
fdece4569e gnu: python-woob: Relax requirements. 
* gnu/packages/python-web.scm (python-woob)[arguments]<#:phases>: Add
phase 'relax-requirements.

Change-Id: Ib178d637ef1658702099ecd1c0fca570128970ed
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:57 +01:00
Nicolas Graves
57379fbc44 gnu: python-wxpython: Relocate phase 'add-missing-.so. 
* gnu/packages/wxwidgets.scm (python-wxpython)[arguments]<#:phases>:
Relocate phase 'add-missing-.so.

Change-Id: I15fd0fdc49c5dbf35d06814663896bc09486c09e
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:57 +01:00
Sharlatan Hellseher
63b0317069 gnu: python-irispy-lmsal: Relocate phase 'set-home. 
* gnu/packages/astronomy.scm (python-irispy-lmsal):
[arguments]<#:phases>: Relocate phase 'set-home.

Relates-to: guix/guix#5892
Change-Id: I743634183b7d7a60d0d24bb28ee06a2709aa2d11
 2026-02-07 12:28:57 +01:00
Sharlatan Hellseher
fc71e0b6ab gnu: python-rpy2: Use python-pytest-8. 
* gnu/packages/statistics.scm (python-rpy2):
  [native-inputs]: Remove python-pytest; add python-pytest-8.

Change-Id: I20c82c77c5589c5802e4d7f252bd24aeedec5d85
 2026-02-07 12:28:57 +01:00
Sharlatan Hellseher
e8a0d060ac gnu: python-sphinxcontrib-programoutput: Skip 2 tests. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-programoutput):
  [phases]{cleanup}: Add step to disable 2 failing tests.

Change-Id: I7ed8c5912c4f0c7641ef05426980686c5cb5b1e3
 2026-02-07 12:28:57 +01:00
Sharlatan Hellseher
9f2c3165b8 gnu: python-abjad: Disable tests. 
* gnu/packages/music.scm (python-abjad):
  [arguments] <tests?>: Disable for now.
  [native-inputs]: Remove python-pytest and python-wheel.

Change-Id: If28e3dcf6b245e165f35ccbb1c6efc2a535453f2
 2026-02-07 12:28:57 +01:00
Sharlatan Hellseher
d7365ddbc3 gnu: python-uqbar: Update to 0.9.6. 
* gnu/packages/graphviz.scm (python-uqbar): Update to 0.9.6.
[arguments] <test-flags>: Skip one test.
[native-inputs]: Remove python-wheel.

Change-Id: I7e317fa2e66c557ae7fbca67ad87bee4722a9d9e
 2026-02-07 12:28:57 +01:00
Nicolas Graves
f0507e1031 gnu: quodlibet: Fix tests by ignoring most problematic ones. 
* gnu/packages/music.scm (quodlibet):
  [arguments]<#:test-flags>: Ignore test files with most failing tests.
  <#:phases>: Reallocate 'pre-check; use default 'check; add 'prepare-x.
  [native-inputs]: Remove xvfb-run; add xorg-server-for-tests.

Change-Id: I3349a249a4d25c916f80c306cccc7ca715e7cf73
Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:57 +01:00
Nicolas Graves
f219efde32 gnu: rapid-photo-downloader: Update to 0.9.37a5. 
* gnu/packages/photo.scm (rapid-photo-downloader): Update to 0.9.37a5.
[native-inputs]: Replace python-setuptools by python-hatchling,
python-hatch-argparse-manpage, python-hatch-gettext.
[propagated-inputs]: Add python-pillow.

Change-Id: I38a87f28a25f3fbb8447a6d6a2ece5ef02dd85c0
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:57 +01:00
Nicolas Graves
bf2a7027d1 gnu: rednotebook: Relocate phase 'set-HOME. 
* gnu/packages/rednotebook.scm (rednotebook)[arguments]<#:phases>:
Relocate phase 'set-HOME.

Change-Id: I266d066f93d158c33aeafd5cdf9aa8002d02678a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:56 +01:00
Nicolas Graves
200ffe6497 gnu: snakemake: Update to 8.30.0. 
* gnu/packages/python-science.scm (snakemake): Update to 8.30.0.
[arguments]<#:test-flags>: Refresh them.
[native-inputs]: Remove python-wheel.

Change-Id: I5b509cdf177224a71c313fed32f913cca85410d6
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:56 +01:00
Nicolas Graves
ceed5daa2b gnu: python-snakemake-interface-storage-plugins: Update to 3.6.0. 
* gnu/packages/python-science.scm (python-snakemake-interface-storage-plugins): Update to 3.6.0.
[arguments]<#:phases>: Add phase 'relax-requirements.

Change-Id: I5e0028168d261ba12dbce846253ca4c8274710d7
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:56 +01:00
Nicolas Graves
98b269d0df gnu: python-legacy-api-wrap: Update to 1.5. 
* gnu/packages/python-xyz.scm (python-legacy-api-wrap): Update to 1.5.

Change-Id: Icc34334452c3ed556652a9c6412fbaa25f6c9e77
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:56 +01:00
Nicolas Graves
eda5b7b016 gnu: twitchy: Relocate phase 'set-HOME. 
* gnu/packages/video.scm (twitchy)[arguments]<#:phases>: Relocate phase
'set-HOME.

Change-Id: Iebee41ed2d4431a40a24aed41b193a51bc1b75d0
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:56 +01:00
Nicolas Graves
67b5f86424 gnu: vorta: Relocate phase 'set-HOME. 
* gnu/packages/backup.scm (vorta)[arguments]<#:phases>: Relocate phase
'set-HOME.

Change-Id: Ief4c40b75e856b6e10df2069ef4bfa501ac5ec8c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:56 +01:00
Nicolas Graves
f319ff5a54 gnu: wllvm: Update to 1.3.1-0.948cdb8. 
* gnu/packages/llvm.scm (wllvm): Update to 1.3.1-0.948cdb8.
[arguments]<#:test-flags>: Ignore failing test.
[native-inputs]: Add clang and procps.

Change-Id: I61ace17965efa739235b2cb8c5946cd64d12a987
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:56 +01:00
Nicolas Graves
a0650005be gnu: xonsh: Ignore failing tests. 
* gnu/packages/shell.scm (xonsh)[arguments]<#:test-flags>: Ignore
tests that fail because of pip.

Change-Id: Ia02075b278aae3740cb67e3b849d748b1b20c9c5
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:56 +01:00
Sharlatan Hellseher
d775596a8f gnu: python-scanpy: Skip one more test. 
* gnu/packages/bioinformatics.scm (python-scanpy):
  [arguments]<test-flags>: Skip one more shaky test.

Change-Id: I6093f2365fbab05ada6cc8cbdfede5bfdfb6f27d
 2026-02-07 12:28:56 +01:00
Sharlatan Hellseher
715cf64dd2 gnu: python-splicekit: Refresh package style. 
* gnu/packages/bioinformatics.scm (python-splicekit): Re order inputs
and arguments and start description from a new line.

Change-Id: I0ae7b2434669cbfee19a39283933fc2af45362a2
 2026-02-07 12:28:56 +01:00
Sharlatan Hellseher
66f7868f61 gnu: python-pybio: Relocate phase 'set-home. 
* gnu/packages/bioinformatics.scm (python-pybio)[arguments]<#:phases>:
Relocate phase 'set-home.

Relates-to: guix/guix#5892
Change-Id: Ifeceb52b20348f2f495217ee371b84be7bbf590b
 2026-02-07 12:28:56 +01:00
Sharlatan Hellseher
a670612844 gnu: python-pandapipes: Update to 0.13.0. 
* gnu/packages/engineering.scm (python-pandapipes): Update to 0.13.0.
[native-inputs]: Remove python-pytest-xdist, python-wheel, and unzip.

Change-Id: I85394f0731448a502386847cdece7c76646e1724
 2026-02-07 12:28:55 +01:00
Sharlatan Hellseher
56dd654bea gnu: python-nptyping: Use python-numpy-1, fix build. 
* gnu/packages/python-check.scm (python-nptyping):
  [phases]{set-source-date-epch}: Remove phase.
  [propagated-inputs]: Remove python-numpy; add python-numpy-1.
  [native-inputs]: Remove python-wheel.

Change-Id: I37652688828425963004c22aff287f76e88f5be1
 2026-02-07 12:28:55 +01:00
Sharlatan Hellseher
8e8d18f61f gnu: python-mathlibtools: Fix build. 
* gnu/packages/lean.scm (python-mathlibtools):
  [phases]{fix-home-directory}: Remove phase.
  {set-home-env}: New phase

Relates-to: guix/guix#5892
Change-Id: If791942e8c8053b00ec82737ef2ad8e1581d7e3c
 2026-02-07 12:28:55 +01:00
Sharlatan Hellseher
b35ce8a33d gnu: python-kivymd: Fix build. 
* gnu/packages/python-graphics.scm (python-kivymd):
  [phases] {set-home}: Move before {build}.

Relates-to: guix/guix#5892
Change-Id: I8a40dfa02b731d66c320806251ce3b3a3577d12c
 2026-02-07 12:28:55 +01:00
Sharlatan Hellseher
749eca3963 gnu: python-mathicsscript: Fix build. 
* gnu/packages/maths.scm (python-mathicsscript):
  [phases]{setenv}: Remove phase.
  {set-home-env}: New phase, set before build.

Relates-to: guix/guix#5892
Change-Id: I2cdb99e7bc6b98536f610f6733ef2f583bcc28ac
 2026-02-07 12:28:55 +01:00
Sharlatan Hellseher
a74315b30d gnu: python-mathics-core: Fix build. 
* gnu/packages/maths.scm (python-mathics-core):
  [phases] {set-home}: Move before {build}.

Relates-to: guix/guix#5892
Change-Id: I682c1e5331e7e3a4f99fa5a5322f79e6093b6b5a
 2026-02-07 12:28:55 +01:00
Sharlatan Hellseher
ff260debed gnu: Remove python-imageio-freeimage. 
* gnu/packages/python-xyz.scm (python-imageio-freeimage): Delete variable.

Fixes: guix/guix#5389
Change-Id: Ieb19e12b773f3bad6630533c90710370594f5be1
 2026-02-07 12:28:55 +01:00
Sharlatan Hellseher
edddc96f5b gnu: python-conda-package-handling: Use python-pytest-8. 
* gnu/packages/python-web.scm (python-conda-package-handling):
[native-inputs]: Remove python-pytest; add python-pytest-8.

Change-Id: I8e86f6c92b72c5b82ca0fdebd2e1aa11ec28a5ce
 2026-02-07 12:28:55 +01:00