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Commit Graph

43604 Commits

Author SHA1 Message Date
Brett Gilio
889aa5800a gnu: emacs-direnv: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-direnv): Adjust indentation.
2019-12-27 19:33:44 -06:00
Brett Gilio
2bd859f0c4 gnu: emacs-calfw: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-calfw): Adjust indentation.
2019-12-27 19:33:22 -06:00
Brett Gilio
499570c6e6 gnu: emacs-autothemer: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-autothemer): Adjust indentation.
2019-12-27 19:33:00 -06:00
Brett Gilio
e79b94b69e gnu: emacs-ag: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-ag): Adjust indentation.
2019-12-27 19:32:30 -06:00
Brett Gilio
8fccd2003c gnu: emacs-emms-mode-line-cycle: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-emms-mode-line-cycle): Adjust indentation.
2019-12-27 19:31:46 -06:00
Brett Gilio
7c776b255f gnu: emacs-wget: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-wget): Adjust indentation.
2019-12-27 19:31:17 -06:00
Brett Gilio
5b225909bc gnu: emacs-reformatter: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-reformatter): Adjust indentation.
2019-12-27 19:30:51 -06:00
Brett Gilio
9af09e9c8f gnu: emacs-dante: Modify version number.
* gnu/packages/emacs-xyz.scm (emacs-dante): Use version number matching tag reference.
2019-12-27 19:30:16 -06:00
Brett Gilio
e0f88157c1 gnu: emacs-haskell-mode: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-haskell-mode): Adjust indentation.
2019-12-27 19:29:52 -06:00
Brett Gilio
0546537f9d gnu: emacs-graphql: Adjust indentation.
* gnu/packages/emacs-xyz.scm (emacs-graphql): Adjust indentation.
2019-12-27 19:29:03 -06:00
Brett Gilio
dd33cff68a gnu: emacs-minions: Update to 0.3.2.
* gnu/packages/emacs-xyz.scm (emacs-minions): Update to 0.3.2.
2019-12-27 19:28:44 -06:00
Brett Gilio
421845afaf gnu: emacs-with-editor: Update to 2.9.0.
* gnu/packages/emacs-xyz.scm (emacs-with-editor): Update to 2.9.0.
2019-12-27 19:28:21 -06:00
Brett Gilio
97b22ac571 gnu: emacs-doom-themes: Update to 2.1.6-3.
* gnu/packages/emacs-xyz.scm (emacs-doom-themes): Update to 2.1.6-3.
[arguments]<emacs-batch-disable-compilation>: Add new "material" theme to list
of exceptions.
2019-12-27 17:05:00 -06:00
Leo Prikler
1cc0445e40 gnu: emacs-doom-themes: Only disable breaking compilations.
* gnu/packages/emacs-xyz.scm (emacs-doom-themes)[phases]:
<build>: Readd this phase.
<disable-breaking-compilation>: Add this phase to work around single file
errors in bytecompilation.

Signed-off-by: Brett Gilio <brettg@gnu.org>
2019-12-27 16:57:28 -06:00
Ricardo Wurmus
bd824de3ad gnu: r-inspect: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.1.
[propagated-inputs]: Add r-gdata.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus
c314ff7cd4 gnu: r-multiassayexperiment: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.1.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus
0718948912 gnu: r-rgadem: Update to 2.34.1.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.34.1.
[propagated-inputs]: Add r-genomicranges.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus
0be4d7de9c gnu: r-clusterprofiler: Update to 3.14.2.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.2.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus
7621bf2d19 gnu: r-enrichplot: Update to 1.6.1.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.1.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus
eb6d1adf15 gnu: r-biocsingular: Update to 1.2.1.
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.1.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus
be94400cd4 gnu: r-affycoretools: Update to 1.58.3.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.3.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus
366cb041e1 gnu: r-car: Update to 3.0-6.
* gnu/packages/statistics.scm (r-car): Update to 3.0-6.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus
e2eb77598a gnu: r-robust: Update to 0.4-18.2.
* gnu/packages/statistics.scm (r-robust): Update to 0.4-18.2.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus
96211e3f33 gnu: r-bigmemory: Update to 4.5.36.
* gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.36.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus
adc1f22332 gnu: r-foreign: Update to 0.8-74.
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-74.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus
976ef4cd52 gnu: r-slam: Update to 0.1-47.
* gnu/packages/cran.scm (r-slam): Update to 0.1-47.
2019-12-27 21:30:26 +01:00
Ricardo Wurmus
1d3c31a23c gnu: r-bibtex: Update to 0.4.2.1.
* gnu/packages/cran.scm (r-bibtex): Update to 0.4.2.1.
2019-12-27 21:30:25 +01:00
Ricardo Wurmus
04b181cb15 gnu: r-topgo: Update to 2.38.1.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.38.1.
2019-12-27 21:30:25 +01:00
Ricardo Wurmus
4997ff5c1b gnu: r-summarizedexperiment: Update to 1.16.1.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.16.1.
2019-12-27 21:30:25 +01:00
Ricardo Wurmus
ba17429d67 gnu: r-delayedarray: Update to 0.12.1.
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.1.
2019-12-27 21:30:25 +01:00
Ricardo Wurmus
152a408051 gnu: r-biocparallel: Update to 1.20.1.
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.20.1.
2019-12-27 21:30:25 +01:00
Ricardo Wurmus
827d0fa846 gnu: r-shortread: Update to 1.44.1.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.44.1.
2019-12-27 21:30:21 +01:00
Christopher Baines
abfe3c5aa2 gnu: guix-data-service: Update to 0.0.1-12.f56935a.
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-12.f56935a.
2019-12-27 14:47:29 +00:00
Nicolas Goaziou
6ab59cfd27 gnu: emacs-org-contrib: Update to 20191226.
* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Update to 20191226.
2019-12-27 09:44:26 +01:00
Nicolas Goaziou
50257d2764 gnu: emacs-org: Update to 9.3.1.
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.3.1.
2019-12-27 09:42:02 +01:00
Brett Gilio
a9650f1135 gnu: emacs-telega: Update to 0.5.4.
* gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.5.4.
[arguments]: Working around imagemagick and svg is no longer needed.
[native-inputs]: Replace emacs-minimal with emacs. This is needed because
bytecompilation requires fringe-bitmap support.
2019-12-26 13:10:37 -06:00
Hartmut Goebel
b291c9570d gnu: Add ffmpegthumbs.
* gnu/packages/kde-multimedia.scm (ffmpegthumbs): New variable.
2019-12-26 16:44:54 +01:00
Hartmut Goebel
2d11fbcf10 gnu: Add audiocd-kio.
* gnu/packages/kde-multimedia.scm (audiocd-kio): New variable.
2019-12-26 16:44:54 +01:00
Hartmut Goebel
6f936d8740 gnu: Add libkcompactdisc.
* gnu/packages/kde-multimedia.scm (libkcompactdisc): New variable.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
ca632dc175 gnu: Add kamoso.
* gnu/packages/kde-multimedia.scm (kamoso): New variable.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
abd4d57851 gnu: Add elisa.
* gnu/packages/kde-multimedia.scm (elisa): New variable.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
f66c7a5c0b gnu: Add kwave.
* gnu/packages/kde-multimedia.scm (kwave): New variable.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
49d40e60b8 gnu: Add kmplayer.
`guix lint` reports two CVEs, both are unrelated:
- CVE-2018-5200: for vendor "pandora" and some 4.2.2.x version
- CVE-2019-9133: windows only (I assume it it alsow relates to the "pandora"
  vendor, since the version the CVE refers to as "solving the issue" does not
  exist at KDE.)

* gnu/packages/kde-multimedia.scm (kmplayer): New variable.
* gnu/packages/patches/kmplayer-aarch64.patch,
  gnu/packages/patches/kmplayer-upstream_Fix-build-with-Qt-5.9.patch: New
  files.
* gnu/local.mk: Add them.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
d695c51dad gnu: Add kmix.
* gnu/packages/kde-multimedia.scm (kmix): New variable.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
d720ecb613 gnu: Add kaffeine.
* gnu/packages/kde-multimedia.scm (kaffeine): New variable.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
d1a6a94650 gnu: Add libkcddb.
* gnu/packages/kde-multimedia.scm (libkcddb): New variable.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
a5eddcd00f gnu: Add k3b.
* gnu/packages/kde-multimedia.scm (k3b): New variable.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
2f9bb949cb gnu: Add juk.
* gnu/packages/kde-multimedia.scm (juk): New variable.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
22b26dd257 gnu: Add dragon.
* gnu/packages/kde-multimedia.scm: New file.
* gnu/lokal.mk (MODULES): Add it.
2019-12-26 16:44:53 +01:00
Hartmut Goebel
a8e149434e gnu: Add audiofile.
Patches should fix all CVEs reported by `guix lint`:
CVE-2015-7747; CVE-2017-6827, CVE-2017-6828, CVE-2017-6829,
CVE-2017-6830, CVE-2017-6831, CVE-2017-6832, CVE-2017-6833,
CVE-2017-6834, CVE-2017-6835, CVE-2017-6836, CVE-2017-6837,
CVE-2017-6838, CVE-2017-6839; CVE-2018-13440; CVE-2018-17095

Since the patches do not reference to CVEs, it's a bit hard to tell which
patch actually closes which CVE.  Debian reports all these to be closed by
the patches below and NixPkgs provides references.

* gnu/packages/audio.scm (audiofile): New variable.
* gnu/packages/patches/audiofile-fix-datatypes-in-tests.patch,
  gnu/packages/patches/audiofile-fix-sign-conversion.patch,
  gnu/packages/patches/audiofile-CVE-2015-7747.patch,
  gnu/packages/patches/audiofile-CVE-2018-13440.patch,
  gnu/packages/patches/audiofile-CVE-2018-17095.patch,
  gnu/packages/patches/audiofile-Check-the-number-of-coefficients.patch,
  gnu/packages/patches/audiofile-Fail-on-error-in-parseFormat.patch,
  gnu/packages/patches/audiofile-Fix-index-overflow-in-IMA.cpp.patch,
  gnu/packages/patches/audiofile-Fix-multiply-overflow-sfconvert.patch,
  gnu/packages/patches/audiofile-Fix-overflow-in-MSADPCM-decodeSam.patch,
  gnu/packages/patches/audiofile-division-by-zero-BlockCodec-runPull.patch,
  gnu/packages/patches/audiofile-hurd.patch,
  gnu/packages/patches/audiofile-signature-of-multiplyCheckOverflow.patch:
  New files.
* gnu/local.mk: Add them.
2019-12-26 16:44:53 +01:00