tribes/guix
1
0
Fork 0
mirror of https://git.savannah.gnu.org/git/guix.git synced 2026-04-08 06:00:36 +02:00
Code Activity
159,785 Commits 72 Branches 40 Tags
892d4cff734ffef57100402f4e99d0442668ca7e
Commit Graph

147651 Commits

Author SHA1 Message Date
Ricardo Wurmus
892d4cff73 gnu: r-rrcov: Update to 1.7-7. 
* gnu/packages/statistics.scm (r-rrcov): Update to 1.7-7.

Change-Id: Ic4598deafb92da77351472440026919fb1e77333
 2025-05-12 08:55:13 +02:00
Ricardo Wurmus
e78f8c3e28 gnu: r-segmented: Update to 2.1-4. 
* gnu/packages/statistics.scm (r-segmented): Update to 2.1-4.

Change-Id: I63be449ed99a70ca7a7a037ec8aae9a0774a2d8d
 2025-05-12 08:55:13 +02:00
Ricardo Wurmus
1bbfcc430f gnu: r-rcurl: Update to 1.98-1.17. 
* gnu/packages/statistics.scm (r-rcurl): Update to 1.98-1.17.

Change-Id: I2545d21b772d959111a1ac8e89954a2ae874e16d
 2025-05-12 08:55:13 +02:00
Ricardo Wurmus
1256c23e29 gnu: r-rcpparmadillo: Update to 14.4.2-1. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 14.4.2-1.

Change-Id: Iee87f621fcc9417fd5f30f17b88a95744ac66570
 2025-05-12 08:55:13 +02:00
Ricardo Wurmus
3852e67c61 gnu: r-rlang: Update to 1.1.6. 
* gnu/packages/statistics.scm (r-rlang): Update to 1.1.6.

Change-Id: I4674ea5b582f5e924ed70b6b1c8eb175496eebad
 2025-05-12 08:55:13 +02:00
Ricardo Wurmus
80e8c65c0c gnu: r-r6: Update to 2.6.1. 
* gnu/packages/statistics.scm (r-r6): Update to 2.6.1.

Change-Id: I00743146c49f86cc226d2fb0122f3d9f87539288
 2025-05-12 08:55:13 +02:00
Ricardo Wurmus
a93967a272 gnu: r-tclust: Update to 2.1-0. 
* gnu/packages/statistics.scm (r-tclust): Update to 2.1-0.
[properties]: Record updater-extra-native-inputs.
[propagated-inputs]: Remove r-ellipsis; add r-rlang.

Change-Id: I887029c302ba9ec12852e1128a05e27ed00de525
 2025-05-12 08:55:12 +02:00
Ricardo Wurmus
9f17727fd5 gnu: r-classdiscovery: Update to 3.4.8. 
* gnu/packages/bioconductor.scm (r-classdiscovery): Update to 3.4.8.

Change-Id: I8d5c707ae55161cf93bf14ab3a4f87c40000327d
 2025-05-12 08:55:12 +02:00
Ricardo Wurmus
d247e988a8 gnu: r-metap: Update to 1.12. 
* gnu/packages/bioconductor.scm (r-metap): Update to 1.12.

Change-Id: Iad76b9dc0261cad250ed087e64c0490deecafd34
 2025-05-12 08:55:12 +02:00
Ricardo Wurmus
76ba63a8bd gnu: r-ggpicrust2: Update to 2.1.2. 
* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 2.1.2.
[propagated-inputs]: Remove r-aldex2, r-circlize, r-deseq2, r-edger, r-ggally, r-lefser,
r-limma, r-maaslin2, r-metagenomeseq, r-microbiomestat, and
r-summarizedexperiment; add r-ggplotify, r-ggraph, r-magrittr,
r-progress, and r-tidygraph.
[native-inputs]: Add r-fgsea, r-ggvenndiagram, r-mockery, and r-upsetr.

Change-Id: I174ff92587f70e46d2c3520c0ff1bbf38e4b8172
 2025-05-12 08:55:12 +02:00
Ricardo Wurmus
94fa3ed421 gnu: r-scgate: Update to 1.7.0. 
* gnu/packages/bioconductor.scm (r-scgate): Update to 1.7.0.

Change-Id: I647cbfc4c289ba8a010e52732b6340856fe1d5b3
 2025-05-12 08:55:12 +02:00
Ricardo Wurmus
fc5e3b794a gnu: r-pscbs: Update to 0.68.0. 
* gnu/packages/bioconductor.scm (r-pscbs): Update to 0.68.0.
[propagated-inputs]: Remove r-listenv.
[native-inputs]: Remove r-r-devices.

Change-Id: Ib198ca104b43c77790c258e8c53fcc34f2b521a1
 2025-05-12 08:55:12 +02:00
Ricardo Wurmus
1a5c48351e gnu: r-dsb: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-dsb): Update to 2.0.0.
[native-inputs]: Add r-spelling.

Change-Id: I1fdebc33bb8a57057b5b8a2ab8b4e401e5631c97
 2025-05-12 08:55:12 +02:00
Ricardo Wurmus
78b2a738dc gnu: r-leidenbase: Update to 0.1.35. 
* gnu/packages/cran.scm (r-leidenbase): Update to 0.1.35.

Change-Id: I321909205ff31abb20cfb7dd37d0a642a0ca451e
 2025-05-12 08:55:12 +02:00
Ricardo Wurmus
0c2570349e gnu: r-terra: Update to 1.8-42. 
* gnu/packages/cran.scm (r-terra): Update to 1.8-42.
[properties]: Record updater-ignored-inputs.
[inputs]: Remove openssh and openssl; add tbb.

Change-Id: I5c3841da2f001c2723f12a6b0bb31485b7a17979
 2025-05-12 08:55:11 +02:00
Ricardo Wurmus
19b1b4162b gnu: r-parameters: Update to 0.25.0. 
* gnu/packages/cran.scm (r-parameters): Update to 0.25.0.

Change-Id: I1ae846fbb20beaf4eabc062fed78fae0f64e07c2
 2025-05-12 08:55:11 +02:00
Ricardo Wurmus
5c4a9de964 gnu: r-networkd3: Update to 0.4.1. 
* gnu/packages/cran.scm (r-networkd3): Update to 0.4.1.
[source]: Simplify snippet.
[arguments]: Use minify-build-system in 'process-javascript phase.
[native-inputs]: Replace node-uglify-js with esbuild; update d3.v4.js.
[propagated-inputs]: Add r-data-tree and r-jsonlite.

Change-Id: I0ed711c56f5a59399614f602bbdfee35bc7e1326
 2025-05-12 08:55:11 +02:00
Ricardo Wurmus
ad41b54e05 gnu: r-duckdb: Update to 1.2.2. 
* gnu/packages/cran.scm (r-duckdb): Update to 1.2.2.
[properties]: Record updater-extra-native-inputs and
updater-ignored-native-inputs.
[native-inputs]: Add r-adbcdrivermanager.

Change-Id: I80daed5aeaca521b501a80b8e1e192f2219861a2
 2025-05-12 08:55:11 +02:00
Ricardo Wurmus
1478039139 gnu: Add r-ggsurvfit. 
* gnu/packages/cran.scm (r-ggsurvfit): New variable.

Change-Id: I39f0057e1335f2d3f9597f2b0ffa2b9755a3c20d
 2025-05-12 08:55:11 +02:00
Ricardo Wurmus
3505904f83 gnu: r-threejs: Update to 0.3.4. 
* gnu/packages/cran.scm (r-threejs): Update to 0.3.4.
[arguments]: Rewrite 'process-javascript phase to use minify-build-system.
[native-inputs]: Replace node-uglify-js with esbuild.

Change-Id: I9d062dedbe7676bd331c8b2ba4fbbdc4fe7efb75
 2025-05-12 08:55:11 +02:00
Ricardo Wurmus
ab547a58b3 gnu: r-git2r: Update to 0.36.2. 
* gnu/packages/cran.scm (r-git2r): Update to 0.36.2.
[properties]: Record updater-extra-native-inputs and
updater-ignored-native-inputs.

Change-Id: I06cfe9a70fb2e3aff1e07717e4a1662100fd2369
 2025-05-12 08:55:11 +02:00
Ricardo Wurmus
7d6ff771f1 gnu: r-proj4: Update to 1.0-15. 
* gnu/packages/cran.scm (r-proj4): Update to 1.0-15.
[properties]: Record updater-extra-inputs and updater-ignored-inputs.

Change-Id: I14dc784e21940b463d9cf062a9b262dc26016b70
 2025-05-12 08:55:11 +02:00
Ricardo Wurmus
880c0191a5 gnu: r-dmrcate: Update to 3.4.0. 
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 3.4.0.

Change-Id: I60622a7c030ec5005a7decaf6f0e8cd77023b715
 2025-05-12 08:55:11 +02:00
Ricardo Wurmus
7597115cc9 gnu: r-sesamedata: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-sesamedata): Update to 1.26.0.

Change-Id: I3ed54ced025597402321b550808686ad2d9175bd
 2025-05-12 08:55:10 +02:00
Ricardo Wurmus
5cae934a8c gnu: r-rtcga-rnaseq: Update to 20151101.38.0. 
* gnu/packages/bioconductor.scm (r-rtcga-rnaseq): Update to 20151101.38.0.

Change-Id: I5152b9bca7c12d968bbdf95a84b8874134f15b11
 2025-05-12 08:55:10 +02:00
Ricardo Wurmus
14f8453677 gnu: r-rnbeads-hg19: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-rnbeads-hg19): Update to 1.40.0.

Change-Id: I37638d96b655cd1c91769d9e6ba332ae09695c39
 2025-05-12 08:55:10 +02:00
Ricardo Wurmus
d2ab8c7909 gnu: r-rnaseqdata-hnrnpc-bam-chr14: Update to 0.46.0. 
* gnu/packages/bioconductor.scm (r-rnaseqdata-hnrnpc-bam-chr14): Update to 0.46.0.

Change-Id: I6032eec74f1b93c4b44492b03fbcf270999f4cae
 2025-05-12 08:55:10 +02:00
Ricardo Wurmus
e9dacafe12 gnu: r-parathyroidse: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-parathyroidse): Update to 1.46.0.

Change-Id: I3408aa5f9e5d5f0f67520e18b34989621d419497
 2025-05-12 08:55:10 +02:00
Ricardo Wurmus
a2958d750b gnu: r-curatedtcgadata: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.30.0.

Change-Id: Ia427cb0b63ba1089d717e7efdb73ff8826bcf07d
 2025-05-12 08:55:10 +02:00
Ricardo Wurmus
ef204b63e1 gnu: r-gagedata: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-gagedata): Update to 2.46.0.

Change-Id: I5fc2489891207fbb249651d0b56eff7c75274cca
 2025-05-12 08:55:10 +02:00
Ricardo Wurmus
7bcd5c266b gnu: r-prolocdata: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-prolocdata): Update to 1.46.0.

Change-Id: I87cd79a11f9a1de302b7c3b7314918964a0c0143
 2025-05-12 08:55:10 +02:00
Ricardo Wurmus
280a808407 gnu: r-minionsummarydata: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-minionsummarydata): Update to 1.38.0.

Change-Id: I978ac23b9ae0c69873d569d64cbce2a40b9b919e
 2025-05-12 08:55:09 +02:00
Ricardo Wurmus
b4036c29e3 gnu: r-minfidataepic: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-minfidataepic): Update to 1.34.0.

Change-Id: I5eac84d1db0b985140ff85bd580379405f1af78d
 2025-05-12 08:55:09 +02:00
Ricardo Wurmus
2b72597f1d gnu: r-mousegastrulationdata: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-mousegastrulationdata): Update to 1.22.0.

Change-Id: I716e7325f77c65cc61f0914ef5ac5bb98e9f6410
 2025-05-12 08:55:09 +02:00
Ricardo Wurmus
eb298a4517 gnu: r-methylclockdata: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-methylclockdata): Update to 1.16.0.

Change-Id: Ie97c9e54f2a60b5132f2fd4f08d60602e0ff23d5
 2025-05-12 08:55:09 +02:00
Ricardo Wurmus
c9763f059f gnu: r-methylaiddata: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-methylaiddata): Update to 1.40.0.

Change-Id: I27fe623dde66a088b9567a6c459c03d6c4d822ca
 2025-05-12 08:55:09 +02:00
Ricardo Wurmus
7b52d2c776 gnu: r-macrophage: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-macrophage): Update to 1.24.0.

Change-Id: I9f7cd0b50543930a4c06f5f0d0067af1d6c82483
 2025-05-12 08:55:09 +02:00
Ricardo Wurmus
d6d559c4ab gnu: r-golubesets: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-golubesets): Update to 1.50.0.

Change-Id: I84daae58a4d84b578f0881cd5a7346966530de99
 2025-05-12 08:55:09 +02:00
Ricardo Wurmus
9046e17e02 gnu: r-genelendatabase: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.44.0.

Change-Id: I834018e74e1ef8ca5c21003a1eb30bbe9c9997d8
 2025-05-12 08:55:09 +02:00
Ricardo Wurmus
30bec76b00 gnu: r-derfinderdata: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-derfinderdata): Update to 2.26.0.

Change-Id: I9db140c44040670c4c2e44a8aaef2b65c24e2831
 2025-05-12 08:55:09 +02:00
Ricardo Wurmus
7bc427ff5d gnu: r-chromstardata: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-chromstardata): Update to 1.34.0.

Change-Id: I77f041f59bef6f1746a2898f92f874b65eed6f22
 2025-05-12 08:55:08 +02:00
Ricardo Wurmus
d32ed19654 gnu: r-celldex: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-celldex): Update to 1.18.0.

Change-Id: I26e32649ebdf8400cf6157b90a548db3b8040ad9
 2025-05-12 08:55:08 +02:00
Ricardo Wurmus
aa3d171fee gnu: r-breastcancervdx: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-breastcancervdx): Update to 1.46.0.

Change-Id: I5c9913b28bd9bd7742c45f253b045855342fe443
 2025-05-12 08:55:08 +02:00
Ricardo Wurmus
a959047757 gnu: r-bodymaprat: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-bodymaprat): Update to 1.24.0.

Change-Id: I8ffbff5971e28cbe660c3722ccac85a981e1d789
 2025-05-12 08:55:08 +02:00
Ricardo Wurmus
9ddfef3a4a gnu: r-bcellviper: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-bcellviper): Update to 1.44.0.

Change-Id: I916361d424274ddddfcb4b41b7df232278293e97
 2025-05-12 08:55:08 +02:00
Ricardo Wurmus
45244ba92e gnu: r-airway: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-airway): Update to 1.28.0.

Change-Id: Ieb1826ed0355850310f2afb6e50ff7c320d1d19d
 2025-05-12 08:55:08 +02:00
Ricardo Wurmus
3ca5b6b7c4 gnu: r-adductdata: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-adductdata): Update to 1.24.0.

Change-Id: I470854bac0f9a3f5080f591ad79a934e0b571cda
 2025-05-12 08:55:08 +02:00
Ricardo Wurmus
667a7fcd75 gnu: r-phyloseq: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.52.0.

Change-Id: Ic5ef1e540aeedcedc25ca3aec6eaec0d7a72a7cb
 2025-05-12 08:55:08 +02:00
Ricardo Wurmus
409b2d0bb1 gnu: r-tximeta: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.26.0.
[native-inputs]: Add r-edger and r-org-dm-eg-db.

Change-Id: I2cc72379c43598ee838cddc06fda7a4930007b76
 2025-05-12 08:55:08 +02:00
Ricardo Wurmus
b6d5e929a9 gnu: r-tricycle: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.16.0.

Change-Id: I1c56fa881495a11f84eec0b1fe0b968c8cb29e50
 2025-05-12 08:55:07 +02:00