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89a47ee98d2c6ef727e62bcd54b7afdddf218d88
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145941 Commits

Author SHA1 Message Date
Sharlatan Hellseher
89a47ee98d gnu: python-objgraph: Adjust inputs. 
* gnu/packages/python-xyz.scm (python-objgraph)
[propagated-inputs]: Remove graphviz; add python-graphviz.
[native-inputs]: Add graphviz.

Change-Id: I6ee63b68be75354ac649e3736dd1d55b60809e91
 2025-04-16 11:46:09 +02:00
Sharlatan Hellseher
1a781c2271 gnu: python-sphinx: Skip one more test. 
* gnu/packages/sphinx.scm (python-sphinx) [arguments] <test-flags>: Skip
one more test.

Change-Id: I5d3e066c88a8b3497454392dd0521ee8741df6b9
 2025-04-16 11:46:08 +02:00
Sharlatan Hellseher
3eca105304 gnu: python-objgraph: Update to 3.6.2. 
* gnu/packages/python-xyz.scm (python-objgraph): Update to 3.6.2.
[build-system]: Swap to pyproject-build-system.
[arguments] <test-flags>: Skip one test.
[native-inputs]: Remove python-mock; add python-pytest,
python-setuptools, and python-wheel.

Change-Id: I4d6fa195f528809a948ea1f8d076603f4e9d0118
 2025-04-16 11:46:08 +02:00
Sharlatan Hellseher
98d32f6dfa gnu: python-virtualenv: Update to 20.29.1. 
* gnu/packages/python-xyz.scm (python-virtualenv): Update to
20.29.1. Fix build.
[arguments] <test-flags>: Skip one more test.
[propagated-inputs]: Remove python-importlib-metadata.
[native-inputs]: Remove python-covdefaults and python-coverage; add
python-pytest-freezer.

Change-Id: I4eb1895181bfba2de0c93c4bee217f2ec7d5b25d
 2025-04-16 11:46:08 +02:00
Sharlatan Hellseher
70ba232d6e gnu: Add python-pytest-freezer. 
* gnu/packages/python-check.scm (python-pytest-freezer): New variable.

Change-Id: I54a50df8279d5831029c1996e8488f6ca471adcb
 2025-04-16 11:46:08 +02:00
Sharlatan Hellseher
b5b0e98364 gnu: python-zope-testing: Update to 5.0.1. 
* gnu/packages/python-web.scm (python-zope-testing): Update to 5.0.1.
[build-system]: Swap to pyproject-build-system.
[native-inputs]: Add python-setuptools and python-wheel.
[home-page]: Adjust it as take from
<https://github.com/zopefoundation/zope.testing>.
[description]: Adjust fill-column.

Change-Id: Ibe1203a0c0602df31d7d0cb49b362ba453c861f1
 2025-04-16 11:46:08 +02:00
Sharlatan Hellseher
90ee5a3fbc gnu: python-pympler: Update to 1.1. 
* gnu/packages/python-xyz.scm (python-pympler): Update to 1.1.
[source] <uri>: Adjust it as name of PyPI archive has been changed.
[bulid-system]: Swap to pyproject-build-system.
[arguments] <test-flags>: Skip one test.
<phases>: Remove 'skip-broken-test.
[native-inputs]: Add python-pytest, python-setuptools, and python-wheel.

Change-Id: I4d9e942a2f52548f0443cb498d678dc892762f90
 2025-04-16 11:46:08 +02:00
Ricardo Wurmus
b9caaf767e gnu: jack-2: Make compatible with Python 3.11. 
* gnu/packages/audio.scm (jack-2)[arguments]: Add phase 'python-compatibility.

Change-Id: Ice859acb84f12feac2d31b231ef18c065d644c6c
 2025-04-16 11:46:08 +02:00
Ricardo Wurmus
dead8b3a52 gnu: Update references to python3.10 directory. 
* gnu/packages/admin.scm (ansible)[native-search-paths]: Refer to python3.11
directory.
* gnu/packages/bioinformatics.scm (scvelo)[arguments]: Same.
* gnu/packages/ebook.scm (calibre)[arguments]: Same.
* gnu/packages/engineering.scm (cadabra2)[arguments]: Same.
* gnu/packages/gnuzilla.scm (make-l10n-package)[arguments]: Same.
* gnu/packages/machine-learning.scm (python-vosk)[arguments]: Same.
* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Same.
* gnu/packages/version-control.scm (mercurial)[native-search-paths]: Same.
* gnu/packages/irc.scm (go-gopkg-in-irc-v3): Update comment.

Change-Id: If2ea1060b42b137474d5cfda6611df6e6fc85270
 2025-04-16 11:46:08 +02:00
Ricardo Wurmus
af689c9765 gnu: Default to Python 3.11. 
* gnu/packages/python.scm (python-3): Point to python-3.11.

Change-Id: I0335ced5a24a5318b71e4c3fdcdbad6cd9e9c5c5
 2025-04-16 11:46:08 +02:00
Ricardo Wurmus
fb4f9823fb gnu: Add python-3.11. 
* gnu/packages/patches/python-3.11-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
* gnu/packages/python.scm (python-3.11): New variable.

Co-authored-by: Tanguy Le Carrour <tanguy@bioneland.org>.
Change-Id: I4a05f75d7b8867166ab91e983abff1a99cd7c80e
 2025-04-16 11:46:07 +02:00
Sharlatan Hellseher
79904458f9 gnu: python-pytest-black: Move to python-check. 
* gnu/packages/python-xyz.scm (python-pytest-black): Move from here ...
* gnu/packages/python-check.scm: ... to here.

Change-Id: I63b64e0e09173312bb6ddea316fe323801cb1176
 2025-04-16 11:46:07 +02:00
Sharlatan Hellseher
96012e341c gnu: python-pytest-black: Update to 0.6.0. 
Project maintainer has been changed, see
<https://github.com/shopkeep/pytest-black/issues/70>.

* gnu/packages/python-xyz.scm (python-pytest-black): Update to 0.6.0.
[source] <uri>: Adjust it as PyPI archive name has been changed.
[build-system]: Swap to pyproject-build-system.
[native-inputs]: Remove python-setuptools-scm, add python-setuptools and
python-wheel.
[home-page]: Fix it.

Change-Id: If2c6eb1edebfbe95207340cbd569668364da7a73
 2025-04-16 11:46:07 +02:00
Ricardo Wurmus
2490649d0d gnu: r-minimal: Update to 4.5.0. 
* gnu/packages/statistics.scm (r-minimal): Update to 4.5.0.

Change-Id: I060123afa8c7e609ec923835ff6f400424de8f6d
 2025-04-16 11:01:23 +02:00
Artyom Bologov
89a0d64ebc gnu: openblas: Add debug output. 
* gnu/packages/maths.scm (openblas): Add "debug" output
[outputs]: Add argument, add "debug" output
[arguments]<#:make-flags>: Add DEBUG=1 flag
 2025-04-16 11:01:23 +02:00
Ricardo Wurmus
3b81b7fb2f gnu: r-quantreg: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-quantreg): Move from here...
* gnu/packages/cran.scm (r-quantreg): ...to here.

Change-Id: Ibb09b586cb6d6400f81f8dacbe43932a744ee5f5
 2025-04-16 11:01:23 +02:00
Ricardo Wurmus
e75681881a gnu: r-quantpsyc: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-quantpsyc): Move from here...
* gnu/packages/cran.scm (r-quantpsyc): ...to here.
[synopsis]: Use lower case.
[description]: Complete the sentence.

Change-Id: Idd7c9ecad81cf0060e2190c63abaa837b376d99b
 2025-04-16 11:01:23 +02:00
Ricardo Wurmus
6035598909 gnu: r-purrr: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-purrr): Move from here...
* gnu/packages/cran.scm (r-purrr): ...to here.

Change-Id: If80c98ef94b5dc7e703565f33c463b55235aae40
 2025-04-16 11:01:23 +02:00
Ricardo Wurmus
9e03c4f2c8 gnu: r-puniform: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-puniform): Move from here...
* gnu/packages/cran.scm (r-puniform): ...to here.

Change-Id: Ia826341194689fc3e35f8005d9f81de47b8746cf
 2025-04-16 11:01:23 +02:00
Ricardo Wurmus
d0b35b8520 gnu: r-pryr: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-pryr): Move from here...
* gnu/packages/cran.scm (r-pryr): ...to here.

Change-Id: I1380132504647eec8c0059610afae17ca01a9378
 2025-04-16 11:01:22 +02:00
Ricardo Wurmus
fa7054325c gnu: r-praise: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-praise): Move from here...
* gnu/packages/cran.scm (r-praise): ...to here.

Change-Id: Ie7aa6d8e98b678d4487dd67997059e6cb908d96b
 2025-04-16 11:01:22 +02:00
Ricardo Wurmus
e128a0b73e gnu: r-prabclus: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-prabclus): Move from here...
* gnu/packages/cran.scm (r-prabclus): ...to here.

Change-Id: Ic49c215878e373d1fe8391ac15c53c274d0964a9
 2025-04-16 11:01:22 +02:00
Ricardo Wurmus
297fc9d437 gnu: r-plotrix: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-plotrix): Move from here...
* gnu/packages/cran.scm (r-plotrix): ...to here.

Change-Id: I674c4443ce03ec9e6fc0a5fb810a095340e136ad
 2025-04-16 11:01:22 +02:00
Ricardo Wurmus
764c48c58a gnu: r-plotly: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-plotly): Move from here...
* gnu/packages/cran.scm (r-plotly): ...to here.

Change-Id: I942879eb40c152d51a5d0d1bf07d5e887b560327
 2025-04-16 11:01:22 +02:00
Ricardo Wurmus
38b83fdd12 gnu: r-pkgmaker: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-pkgmaker): Move from here...
* gnu/packages/cran.scm (r-pkgmaker): ...to here.

Change-Id: I76f004f673bd3a20f76e57c2bb6d1e191c845b97
 2025-04-16 11:01:22 +02:00
Ricardo Wurmus
c8b06d9007 gnu: r-pkgconfig: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-pkgconfig): Move from here...
* gnu/packages/cran.scm (r-pkgconfig): ...to here.

Change-Id: I7bc801d886a1b6f60c8c59770385e8b09d49c312
 2025-04-16 11:01:22 +02:00
Ricardo Wurmus
05d0615070 gnu: r-pcapp: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-pcapp): Move from here...
* gnu/packages/cran.scm (r-pcapp): ...to here.

Change-Id: Ice2f24fb4fd070087ea52adc9e218f5ea5889cd3
 2025-04-16 11:01:22 +02:00
Ricardo Wurmus
fdc5491f25 gnu: r-pbkrtest: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-pbkrtest): Move from here...
* gnu/packages/cran.scm (r-pbkrtest): ...to here.

Change-Id: I4cd3810f9c815b385b896b8836276f3c2f128eff
 2025-04-16 11:01:21 +02:00
Ricardo Wurmus
ef485ddb81 gnu: r-pbapply: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-pbapply): Move from here...
* gnu/packages/cran.scm (r-pbapply): ...to here.

Change-Id: I7fdbf5e9693b7775ec476aa0e374779bd90859ad
 2025-04-16 11:01:21 +02:00
Ricardo Wurmus
ed18732cd9 gnu: r-numderiv: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-numderiv): Move from here...
* gnu/packages/cran.scm (r-numderiv): ...to here.

Change-Id: Ibfd5657c5b759c887cd1c338544b0b4034ab14d7
 2025-04-16 11:01:21 +02:00
Ricardo Wurmus
96c5d0b9b3 gnu: r-norm: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-norm): Move from here...
* gnu/packages/cran.scm (r-norm): ...to here.
[description]: Update from CRAN.
[license]: Correct to GPLv2+.

Change-Id: I7ac12f62894616d0e22ea7573da0dffa576b4696
 2025-04-16 11:01:21 +02:00
Ricardo Wurmus
e30851c465 gnu: r-nloptr: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-nloptr): Move from here...
* gnu/packages/cran.scm (r-nloptr): ...to here.

Change-Id: I6b6e82faccfbf5f58f6926034c23aadfe2f8f971
 2025-04-16 11:01:21 +02:00
Ricardo Wurmus
d509af04c1 gnu: r-naniar: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-naniar): Move from here...
* gnu/packages/cran.scm (r-naniar): ...to here.

Change-Id: I1509b43a4e05335796cbd589a769d82166409687
 2025-04-16 11:01:21 +02:00
Ricardo Wurmus
b399717adc gnu: r-mvtnorm: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-mvtnorm): Move from here...
* gnu/packages/cran.scm (r-mvtnorm): ...to here.

Change-Id: I57f6b08ad9d6f66a3233accd7521017424f21a96
 2025-04-16 11:01:21 +02:00
Ricardo Wurmus
91bb76fbf1 gnu: r-mumin: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-mumin): Move from here...
* gnu/packages/cran.scm (r-mumin): ...to here.

Change-Id: I9be39288510cd11acc0a84d5003932600c2fdaec
 2025-04-16 11:01:20 +02:00
Ricardo Wurmus
0c7020be16 gnu: r-multitaper: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-multitaper): Move from here...
* gnu/packages/cran.scm (r-multitaper): ...to here.

Change-Id: I18ce64d948f594ad298a8e59ac5a56f3bfcfc0d8
 2025-04-16 11:01:20 +02:00
Ricardo Wurmus
48d54c93f2 gnu: r-modeltools: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-modeltools): Move from here...
* gnu/packages/cran.scm (r-modeltools): ...to here.

Change-Id: Iac17098113d11baf645d07332e3415d4489fbc1c
 2025-04-16 11:01:20 +02:00
Ricardo Wurmus
2b2aaef46f gnu: r-modelmetrics: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-modelmetrics): Move from here...
* gnu/packages/cran.scm (r-modelmetrics): ...to here.

Change-Id: I9d5742cbac41884e760e33b499c8f0befa1b64e3
 2025-04-16 11:01:20 +02:00
Ricardo Wurmus
88176baf64 gnu: r-mnormt: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-mnormt): Move from here...
* gnu/packages/cran.scm (r-mnormt): ...to here.

Change-Id: Ia92c9bf5b5f4f3ba061187f330ce8d1366961ce0
 2025-04-16 11:01:20 +02:00
Ricardo Wurmus
47e8d6a551 gnu: r-mixtools: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-mixtools): Move from here...
* gnu/packages/cran.scm (r-mixtools): ...to here.

Change-Id: I97757ac2e72097ede8c04122917075afdc2ba96f
 2025-04-16 11:01:20 +02:00
Ricardo Wurmus
76d5c4cded gnu: r-minqa: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-minqa): Move from here...
* gnu/packages/cran.scm (r-minqa): ...to here.

Change-Id: Ia067ea5a6edbda3552753eda3802ba6f3fb5df8b
 2025-04-16 11:01:20 +02:00
Ricardo Wurmus
f0abe5d88b gnu: r-microbenchmark: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-microbenchmark): Move from here...
* gnu/packages/cran.scm (r-microbenchmark): ...to here.

Change-Id: Ibdeba2167214f20470206e32a821504c5e5226ba
 2025-04-16 11:01:20 +02:00
Ricardo Wurmus
34f1793f9d gnu: r-memoise: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-memoise): Move from here...
* gnu/packages/cran.scm (r-memoise): ...to here.

Change-Id: I9cd59d1aea04b1756da9b7ec5edd3a26b386eb8d
 2025-04-16 11:01:19 +02:00
Ricardo Wurmus
c922dc5f49 gnu: r-mclust: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-mclust): Move from here...
* gnu/packages/cran.scm (r-mclust): ...to here.

Change-Id: I130f21e23d4063a7eb8529ad9eaef4f040449445
 2025-04-16 11:01:19 +02:00
Ricardo Wurmus
9833ac1334 gnu: r-matrixstats: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-matrixstats): Move from here...
* gnu/packages/cran.scm (r-matrixstats): ...to here.

Change-Id: Idd8b6ea48d6b2d3735d4059778ab2a94dbf5a80d
 2025-04-16 11:01:19 +02:00
Ricardo Wurmus
677d4a9339 gnu: r-matrixmodels: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-matrixmodels): Move from here...
* gnu/packages/cran.scm (r-matrixmodels): ...to here.

Change-Id: I81b1a4db1d9f2343ad3a7960c8458eddab0acc98
 2025-04-16 11:01:19 +02:00
Ricardo Wurmus
3f9629851c gnu: r-lubridate: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-lubridate): Move from here...
* gnu/packages/cran.scm (r-lubridate): ...to here.

Change-Id: I12de4152992c1132a0730d363232823316fdd9e5
 2025-04-16 11:01:19 +02:00
Ricardo Wurmus
78776ee50e gnu: r-logspline: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-logspline): Move from here...
* gnu/packages/cran.scm (r-logspline): ...to here.

Change-Id: I2376268411c310557a0123f4302c14588f110241
 2025-04-16 11:01:19 +02:00
Ricardo Wurmus
c8ffc07f8b gnu: r-locfit: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-locfit): Move from here...
* gnu/packages/cran.scm (r-locfit): ...to here.

Change-Id: I234ce8ca7f810770007302c926d8e36196af330e
 2025-04-16 11:01:19 +02:00
Ricardo Wurmus
3ca5ebc72b gnu: r-lmom: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-lmom): Move from here...
* gnu/packages/cran.scm (r-lmom): ...to here.

Change-Id: Ia18c5fdd5554617b8af0751fbdd08c838240a337
 2025-04-16 11:01:19 +02:00